TS
Ted Sharpe
Evolution, MolecularGenomeGenetic VariationGenomicsSoftwareAlgorithmsBiological EvolutionDNA Copy Number VariationsEukaryotaGene Duplication
On Valency
published · living versionsW_26xzgw86·v1 · currentpublished
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
with Keith R. Bradnam, Joseph N. Fass, Anton Alexandrov, Paul Baranay +86
1 version
Preprints & journals
25 papers in the corpus · 2002–2024Author Correction: Comprehensive mutational scanning of EGFR reveals TKI sensitivities of extracellular domain mutants.38627431 · Hayes, Tikvah K, Aquilanti, Elisa, Persky, Nicole S et al.2024 · 1 citationNature communications. 2024;15(1):3273
Comprehensive mutational scanning of EGFR reveals TKI sensitivities of extracellular domain mutants.38548752 · Hayes, Tikvah K, Aquilanti, Elisa, Persky, Nicole S et al.2024 · 33 citationsNature communications. 2024;15(1):2742
Defining protein variant functions using high-complexity mutagenesis libraries and enhanced mutant detection software ASMv1.010.1101/2021.06.16.448102v7 · Yang, X., Hong, A. L., Sharpe, T. et al.2021 · 12 citationsbioRxiv
Author Correction: A structural variation reference for medical and population genetics.33536627 · Collins, Ryan L, Brand, Harrison, Karczewski, Konrad J et al.2025 · 15 citationsNature. 2021;590(7846):E55
A structural variation reference for medical and population genetics.32461652 · Collins, Ryan L, Brand, Harrison, Karczewski, Konrad J et al.2020 · 1,037 citationsNature. 2020;581(7809):444-451
GATK PathSeq: a customizable computational tool for the discovery and identification of microbial sequences in libraries from eukaryotic hosts.29982281 · Walker, Mark A, Pedamallu, Chandra Sekhar, Ojesina, Akinyemi I et al.2019 · 124 citationsBioinformatics (Oxford, England). 2018;34(24):4287-4289
Mutational processes shape the landscape of TP53 mutations in human cancer.30224644 · Giacomelli, Andrew O, Yang, Xiaoping, Lintner, Robert E et al.2019 · 555 citationsNature genetics. 2018;50(10):1381-1387
SvABA: genome-wide detection of structural variants and indels by local assembly.29535149 · Wala, Jeremiah A, Bandopadhayay, Pratiti, Greenwald, Noah F et al.2018 · 444 citationsGenome research. 2018;28(4):581-591
Prospective functional classification of all possible missense variants in PPARG.27749844 · Majithia, Amit R, Tsuda, Ben, Agostini, Maura et al.2017 · 233 citationsNature genetics. 2016;48(12):1570-1575
Comprehensive variation discovery in single human genomes.25326702 · Weisenfeld, Neil I, Yin, Shuangye, Sharpe, Ted et al.2015 · 199 citationsNature genetics. 2014;46(12):1350-5
The genomic substrate for adaptive radiation in African cichlid fish.25186727 · Brawand, David, Wagner, Catherine E, Li, Yang I et al.2014 · 987 citationsNature. 2014;513(7518):375-381
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species.23870653 · Bradnam, Keith R, Fass, Joseph N, Alexandrov, Anton et al.2014 · 671 citationsGigaScience. 2013;2(1):10
The African coelacanth genome provides insights into tetrapod evolution.23598338 · Amemiya, Chris T, Alföldi, Jessica, Lee, Alison P et al.2013 · 670 citationsNature. 2013;496(7445):311-6
Novel origins of copy number variation in the dog genome.22916802 · Berglund, Jonas, Nevalainen, Elisa M, Molin, Anna-Maja et al.2015 · 78 citationsGenome biology. 2012;13(8):R73
Finished bacterial genomes from shotgun sequence data.22829535 · Ribeiro, Filipe J, Przybylski, Dariusz, Yin, Shuangye et al.2013 · 211 citationsGenome research. 2012;22(11):2270-7
Assemblathon 1: a competitive assessment of de novo short read assembly methods.21926179 · Earl, Dent, Bradnam, Keith, St John, John et al.2012 · 507 citationsGenome research. 2011;21(12):2224-41
High-quality draft assemblies of mammalian genomes from massively parallel sequence data.21187386 · Gnerre, Sante, Maccallum, Iain, Przybylski, Dariusz et al.2011 · 1,533 citationsProceedings of the National Academy of Sciences of the United States of America. 2011;108(4):1513-8
Subtype-specific genomic alterations define new targets for soft-tissue sarcoma therapy.20601955 · Barretina, Jordi, Taylor, Barry S, Banerji, Shantanu et al.2010 · 735 citationsNature genetics. 2010;42(8):715-21
Whole-genome resequencing reveals loci under selection during chicken domestication.20220755 · Rubin, Carl-Johan, Zody, Michael C, Eriksson, Jonas et al.2010 · 1,131 citationsNature. 2010;464(7288):587-91
Genome sequence, comparative analysis, and population genetics of the domestic horse.19892987 · Wade, C M, Giulotto, E, Sigurdsson, S et al.2009 · 822 citationsScience (New York, N.Y.). 2009;326(5954):865-7
Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans.19741609 · Haas, Brian J, Kamoun, Sophien, Zody, Michael C et al.2009 · 1,472 citationsNature. 2009;461(7262):393-8
Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences.17495919 · Mikkelsen, Tarjei S, Wakefield, Matthew J, Aken, Bronwen et al.2007 · 711 citationsNature. 2007;447(7141):167-77
DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage.16625196 · Zody, Michael C, Garber, Manuel, Adams, David J et al.2006 · 162 citationsNature. 2006;440(7087):1045-9
Analysis of the DNA sequence and duplication history of human chromosome 15.16572171 · Zody, Michael C, Garber, Manuel, Sharpe, Ted et al.2006 · 78 citationsNature. 2006;440(7084):671-5
Initial sequencing and comparative analysis of the mouse genome.12466850 · Mouse Genome Sequencing Consortium, Waterston, Robert H, Lindblad-Toh, Kerstin et al.2002 · 7,179 citationsNature. 2002;420(6915):520-62
Career total: 32 works. 25 are in this corpus.
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