AK
Alexander Kramer
bioinformaticsCOVID-19SARS-CoV-2genomicsChlorophytacomparative genomicsDNA Transposable ElementsEukaryotaevolutionEvolution, Molecular
On Valency
published · living versionsW_ftmhdbxk·v1 · currentpublished
Preprints & journals
11 papers in the corpus · 2021–2026Splicing deficiency is driven by genomic erosion in non-recombining algal mating-type chromosomes.42348496 · Condon, Chris, Galvez, Andrea, Kramer, Alexander et al.2026 · 1 citationPLoS biology. 2026;24(6):e3003823
Panmap: Scalable phylogeny-guided alignment, genotyping, and placement on pangenomes.41959338 · Kramer, Alexander M, Zhang, Alan, Ayala, Nicolas et al.2026 · 0 citationsbioRxiv : the preprint server for biology. 2026
Evidence for an ancient master sex determination gene in Hymenoptera10.64898/2025.12.24.696408v2 · Velasquez, S. M., Walker, I. J., McClure, T. A. et al.2025 · 2 citationsbioRxiv
Extensive splicing deficiency in a degenerating mating-type chromosome.41427339 · Condon, Chris, Galvez, Andrea, Kramer, Alexander et al.2026 · 0 citationsbioRxiv : the preprint server for biology. 2025
Online Phylogenetics with matOptimize Produces Equivalent Trees and is Dramatically More Efficient for Large SARS-CoV-2 Phylogenies than de novo and Maximum-Likelihood Implementations.37232476 · Kramer, Alexander M, Thornlow, Bryan, Ye, Cheng et al.2023 · 24 citationsSystematic biology. 2023;72(5):1039-1051
Treenome Browser: co-visualization of enormous phylogenies and millions of genomes.36453872 · Kramer, Alexander M, Sanderson, Theo, Corbett-Detig, Russell2023 · 10 citationsBioinformatics (Oxford, England). 2023;39(1)
Transposable elements drive intron gain in diverse eukaryotes.36417430 · Gozashti, Landen, Roy, Scott W, Thornlow, Bryan et al.2022 · 53 citationsProceedings of the National Academy of Sciences of the United States of America. 2022;119(48):e2209766119
matOptimize: a parallel tree optimization method enables online phylogenetics for SARS-CoV-2.35731204 · Ye, Cheng, Thornlow, Bryan, Hinrichs, Angie et al.2022 · 37 citationsBioinformatics (Oxford, England). 2022;38(15):3734-3740
Online Phylogenetics using Parsimony Produces Slightly Better Trees and is Dramatically More Efficient for Large SARS-CoV-2 Phylogenies than de novo and Maximum-Likelihood Approaches.35611334 · Thornlow, Bryan, Kramer, Alexander, Ye, Cheng et al.2024 · 11 citationsbioRxiv : the preprint server for biology. 2022
A Daily-Updated Database and Tools for Comprehensive SARS-CoV-2 Mutation-Annotated Trees.34469548 · McBroome, Jakob, Thornlow, Bryan, Hinrichs, Angie S et al.2021 · 106 citationsMolecular biology and evolution. 2021;38(12):5819-5824
Pandemic-scale phylogenetics.34927180 · Ye, Cheng, Thornlow, Bryan, Kramer, Alexander et al.2023 · 4 citationsbioRxiv : the preprint server for biology. 2021
Career total: 20 works. 11 are in this corpus.
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