TÇ
Tolga Çukur
eess.IVcs.CVMagnetic Resonance ImagingImage Processing, Computer-AssistedAlgorithmscs.LGfMRIMRIphysics.med-phSignal Processing, Computer-Assisted
On Valency
published · living versionsW_ts775jxa·v1 · currentpublished
Guidance-Coupled Nullspace Drifting for One-Step Medical Image Reconstruction
with M. Tuna Alatan, Agah Server Tapan, Şaban Öztürk, Muhammad Usama Mirza +2
1 version
Preprints & journals
101 papers in the corpus · 2007–2026Stochastic Finite-Transition Learning and Exploration for Accelerated MRI Reconstruction2610.13095v1 · Muhammad Usama Mirza, Esin Ozturk Is\ik, Tolga Cukur2026 · 0 citationsarXiv
Meta-Entity Driven Triplet Mining for Aligning Medical Vision-Language Models.41894217 · Yilmaz, Melih B, Ozturk, Saban, Kara, Muti et al.2026 · 1 citationIEEE journal of biomedical and health informatics. 2026;30(10):8799-8812
Physics-Driven Autoregressive State Space Models for Medical Image Reconstruction.42490290 · Kabas, Bilal, Arslan, Fuat, Nezhad, Valiyeh A et al.2026 · 24 citationsIEEE transactions on medical imaging. 2026;45(10):5153-5165
scHyperLink: Revealing Cell-Type-Specific Gene Regulation With Hypergraph Neural Networks.41489955 · Kulkul, Emre, Cukur, Tolga, Koc, Aykut2026 · 2 citationsIEEE journal of biomedical and health informatics. 2026;30(8):6474-6487
MicroKAN: Mapping human brain microstructure using diffusion MRI and adaptive nonlinear modeling.42259478 · Chen, Yifei, Li, Zihan, Wang, Yuanhan et al.2026 · 0 citationsNeuroImage. 2026;337:122032
DenoMamba: A Fused State-Space Model for Low-Dose CT Denoising.41191471 · Ozturk, Saban, Duran, Oguz Can, Cukur, Tolga2026 · 36 citationsIEEE journal of biomedical and health informatics. 2026;30(6):5353-5366
Learning Fourier-Constrained Diffusion Bridges for MRI Reconstruction.41824351 · Mirza, M Usama, Dalmaz, Onat, Bedel, Hasan A et al.2026 · 28 citationsIEEE transactions on medical imaging. 2026;45(6):3229-3245
I2I-Mamba: Multi-modal medical image synthesis via selective state space modeling.42213573 · Atli, Omer F, Kabas, Bilal, Arslan, Fuat et al.2026 · 41 citationsIEEE transactions on bio-medical engineering. 2026;PP
A Tutorial on MRI Reconstruction: From Modern Methods to Clinical Implications.41042661 · Cukur, Tolga, Dar, Salman Uh, Nezhad, Valiyeh A et al.2026 · 10 citationsIEEE transactions on bio-medical engineering. 2026;73(5):1900-1920
ACE-LoRA: Graph-Attentive Context Enhancement for Parameter-Efficient Adaptation of Medical Vision-Language Models2603.17079v1 · M. Arda Ayd\in, Melih B. Yilmaz, Aykut Koc et al.2026 · 0 citationsarXiv
Semi-supervision for clinical contrast-weighted image synthesis from magnetic resonance fingerprinting.41843381 · Yurt, Mahmut, Alkan, Cagan, Cao, Xiaozhi et al.2026 · 0 citationsMagma (New York, N.Y.). 2026;39(5):765-781
Editorial AI Reviewer (AIR) Trial for Responsible, Secure, and Efficient Peer Review.41605172 · Wang, Ge, Cukur, Tolga, Kruger, Uwe et al.2026 · 0 citationsIEEE transactions on medical imaging. 2026;45(3):867-869
NeuroSSM: Multiscale Differential State-Space Modeling for Context-Aware fMRI Analysis2601.01229v1 · Furkan Genc, Boran İsmet Macun, Sait Sarper Ozaslan et al.2026 · 0 citationsarXiv
DreaMR: Diffusion-Driven Counterfactual Explanation for Functional MRI.40030294 · Bedel, Hasan A, Cukur, Tolga2025 · 43 citationsIEEE transactions on medical imaging. 2025;44(9):3654-3669
Self-consistent recursive diffusion bridge for medical image translation.40769096 · Arslan, Fuat, Kabas, Bilal, Dalmaz, Onat et al.2025 · 70 citationsMedical image analysis. 2025;106:103747
Efficient Noise Calculation in Deep Learning-based MRI Reconstructions2505.02007v1 · Onat Dalmaz, Arjun D. Desai, Reinhard Heckel et al.2025 · 0 citationsarXiv
Generative Autoregressive Transformers for Model-Agnostic Federated MRI Reconstruction2502.04521v3 · Valiyeh A. Nezhad, Gokberk Elmas, Bilal Kabas et al.2025 · 5 citationsarXiv
Structural Connectivity of the Basal Ganglia from Patient-Individual Tractography Is Key for Understanding the Effects of Deep Brain Stimulation in Parkinson's Disease.40532683 · Loução, Ricardo, Kocher, Martin, Brandt, Gregor Alexander et al.2025 · 1 citationStereotactic and functional neurosurgery. 2025;103(4):279-294
Erratum to "Automated parameter selection for accelerated MRI reconstruction via low-rank modeling of local k-space neighborhoods" [Z Med. Phys. 33 (2023) 203-219].39227224 · Ilicak, Efe, Saritas, Emine Ulku, Çukur, Tolga2025 · 0 citationsZeitschrift fur medizinische Physik. 2025;35(1):119
A Plug-In Graph Neural Network to Boost Temporal Sensitivity in fMRI Analysis.38885104 · Sivgin, Irmak, Bedel, Hasan Atakan, Ozturk, Saban et al.2024 · 20 citationsIEEE journal of biomedical and health informatics. 2024;28(9):5323-5334
Bayesian Conditioned Diffusion Models for Inverse Problems2406.09768v1 · Alper Gungor, Bahri Batuhan Bilecen, Tolga Cukur2024 · 3 citationsarXiv
COVID-19 Detection From Respiratory Sounds With Hierarchical Spectrogram Transformers.38051612 · Aytekin, Idil, Dalmaz, Onat, Gonc, Kaan et al.2024 · 35 citationsIEEE journal of biomedical and health informatics. 2024;28(3):1273-1284
One model to unite them all: Personalized federated learning of multi-contrast MRI synthesis.38402791 · Dalmaz, Onat, Mirza, Muhammad U, Elmas, Gokberk et al.2024 · 52 citationsMedical image analysis. 2024;94:103121
DEQ-MPI: A Deep Equilibrium Reconstruction With Learned Consistency for Magnetic Particle Imaging.37527298 · Gungor, Alper, Askin, Baris, Soydan, Damla Alptekin et al.2024 · 61 citationsIEEE transactions on medical imaging. 2024;43(1):321-334
Unsupervised Medical Image Translation With Adversarial Diffusion Models.37379177 · Ozbey, Muzaffer, Dalmaz, Onat, Dar, Salman U H et al.2023 · 523 citationsIEEE transactions on medical imaging. 2023;42(12):3524-3539
Parallel-stream fusion of scan-specific and scan-general priors for learning deep MRI reconstruction in low-data regimes.37883853 · Dar, Salman Ul Hassan, Öztürk, Şaban, Özbey, Muzaffer et al.2023 · 27 citationsComputers in biology and medicine. 2023;167:107610
HydraViT: Adaptive Multi-Branch Transformer for Multi-Label Disease Classification from Chest X-ray Images2310.06143v1 · Saban Ozturk, M. Yigit Turalı, Tolga Cukur2023 · 63 citationsarXiv
FD-Net: An unsupervised deep forward-distortion model for susceptibility artifact correction in EPI.37811681 · Zaid Alkilani, Abdallah, Çukur, Tolga, Saritas, Emine Ulku2023 · 17 citationsMagnetic resonance in medicine. 2024;91(1):280-296
CalibFPA: A Focal Plane Array Imaging System based on Online Deep-Learning Calibration2309.11421v1 · Alper Gungor, M. Umut Bahceci, Yasin Ergen et al.2023 · 1 citationarXiv
Federated Learning of Generative Image Priors for MRI Reconstruction.36350868 · Elmas, Gokberk, Dar, Salman U H, Korkmaz, Yilmaz et al.2023 · 116 citationsIEEE transactions on medical imaging. 2023;42(7):1996-2009
Self-Supervised MRI Reconstruction with Unrolled Diffusion Models2306.16654v2 · Yilmaz Korkmaz, Tolga Cukur, Vishal M. Patel2023 · 73 citationsarXiv
Adaptive diffusion priors for accelerated MRI reconstruction.37384951 · Güngör, Alper, Dar, Salman Uh, Öztürk, Şaban et al.2023 · 248 citationsMedical image analysis. 2023;88:102872
BolT: Fused window transformers for fMRI time series analysis.37224718 · Bedel, Hasan A, Sivgin, Irmak, Dalmaz, Onat et al.2023 · 124 citationsMedical image analysis. 2023;88:102841
Editorial: Machine learning methods for human brain imaging.36926218 · Yarman Vural, Fatos Tunay, Newman, Sharlene D, Çukur, Tolga et al.2024 · 0 citationsFrontiers in neuroinformatics. 2023;17:1154835
JointNET: A Deep Model for Predicting Active Sacroiliitis from Sacroiliac Joint Radiography2301.10769v2 · Sevcan Turk, Ahmet Demirkaya, M Yigit Turali et al.2023 · 0 citationsarXiv
Learning Deep MRI Reconstruction Models from Scratch in Low-Data Regimes2301.02613v1 · Salman UH Dar, Saban Ozturk, Muzaffer Ozbey et al.2023 · 1 citationarXiv
TranSMS: Transformers for Super-Resolution Calibration in Magnetic Particle Imaging.35816533 · Gungor, Alper, Askin, Baris, Soydan, Damla Alptekin et al.2022 · 114 citationsIEEE transactions on medical imaging. 2022;41(12):3562-3574
Semi-Supervised Learning of MRI Synthesis Without Fully-Sampled Ground Truths.35969576 · Yurt, Mahmut, Dalmaz, Onat, Dar, Salman et al.2022 · 35 citationsIEEE transactions on medical imaging. 2022;41(12):3895-3906
Content-Based Medical Image Retrieval with Opponent Class Adaptive Margin Loss2211.15371v1 · Saban Ozturk, Emin Celik, Tolga Cukur2022 · 59 citationsarXiv
ResViT: Residual Vision Transformers for Multimodal Medical Image Synthesis.35436184 · Dalmaz, Onat, Yurt, Mahmut, Cukur, Tolga2022 · 604 citationsIEEE transactions on medical imaging. 2022;41(10):2598-2614
Unsupervised Simplification of Legal Texts2209.00557v1 · Mert Cemri, Tolga Cukur, Aykut Koc2022 · 3 citationsarXiv
Deep Clustering via Center-Oriented Margin Free-Triplet Loss for Skin Lesion Detection in Highly Imbalanced Datasets.35767499 · Ozturk, Saban, Cukur, Tolga2022 · 72 citationsIEEE journal of biomedical and health informatics. 2022;26(9):4679-4690
Task-Dependent Warping of Semantic Representations during Search for Visual Action Categories.35863889 · Shahdloo, Mo, Çelik, Emin, Urgen, Burcu A et al.2024 · 22 citationsThe Journal of neuroscience : the official journal of the Society for Neuroscience. 2022;42(35):6782-6799
Unsupervised MRI Reconstruction via Zero-Shot Learned Adversarial Transformers.35085076 · Korkmaz, Yilmaz, Dar, Salman U H, Yurt, Mahmut et al.2022 · 231 citationsIEEE transactions on medical imaging. 2022;41(7):1747-1763
Progressively volumetrized deep generative models for data-efficient contextual learning of MR image recovery.35367713 · Yurt, Mahmut, Özbey, Muzaffer, Dar, Salman U H et al.2022 · 36 citationsMedical image analysis. 2022;78:102429
Automated Parameter Selection for Accelerated MRI Reconstruction via Low-Rank Modeling of Local k-Space Neighborhoods.35216887 · Ilicak, Efe, Saritas, Emine Ulku, Çukur, Tolga2023 · 11 citationsZeitschrift fur medizinische Physik. 2023;33(2):203-219
Constrained Ellipse Fitting for Efficient Parameter Mapping With Phase-Cycled bSSFP MRI.34351856 · Keskin, Kubra, Yilmaz, Ugur, Cukur, Tolga2022 · 8 citationsIEEE transactions on medical imaging. 2022;41(1):14-26
Deep Learned Super Resolution of System Matrices for Magnetic Particle Imaging.34892051 · Gungor, Alper, Askin, Baris, Soydan, Damla Alptekin et al.2021 · 17 citationsAnnual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference. 2021;2021:3749-3752
Attentional Modulation of Hierarchical Speech Representations in a Multitalker Environment.34115102 · Kiremitçi, Ibrahim, Yilmaz, Özgür, Çelik, Emin et al.2022 · 17 citationsCerebral cortex (New York, N.Y. : 1991). 2021;31(11):4986-5005
Cortical networks of dynamic scene category representation in the human brain.34411847 · Çelik, Emin, Keles, Umit, Kiremitçi, İbrahim et al.2021 · 9 citationsCortex; a journal devoted to the study of the nervous system and behavior. 2021;143:127-147
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