RT
Reinhard Töpfer
Vitiscs.CVgrapevineQuantitative Trait LociVitis viniferagrapevine breedingGene Expression Regulation, PlantGenes, PlantGenome, Plantplant biology
On Valency
published · living versionsW_35ndxnme·v1 · currentpublished
Automated Image Analysis Framework for the High-Throughput Determination of Grapevine Berry Sizes Using Conditional Random Fields
with Ribana Roscher, Katja Herzog, Annemarie Kunkel, Anna Kicherer +1
1 version
Preprints & journals
71 papers in the corpus · 1987–2026A multivariate Bayesian modeling strategy coupled with QTL analysis reveals genetic loci linking important sensory wine quality attributes with their corresponding wine aroma compounds.42433889 · Heinekamp, Tom, Schüttler, Armin, Röckel, Franco et al.2026 · 0 citationsFrontiers in plant science. 2026;17:1851889
A novel resistance locus from an unexploited East Asian Vitis coignetiae confers resistance to grapevine downy mildew.42223657 · Malagol, Nagarjun, Werner, Anna, Töpfer, Reinhard et al.2026 · 0 citationsTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik. 2026;139(6)
Hyperspectral differentiation of three grapevine yellows diseases and symptomatically similar stresses.41937759 · Alisaac, Elias, Zheng, Xiaorong, Fischer, Benedikt et al.2026 · 0 citationsFrontiers in plant science. 2026;17:1794713
Heat waves reveal additive genetic effects leading to sunburn resilience of grapevine berries.40661766 · Heinekamp, Tom, Röckel, Franco, Herzog, Katja et al.2025 · 3 citationsFrontiers in plant science. 2025;16:1533345
A high-throughput ResNet CNN approach for automated grapevine leaf hair quantification.39794464 · Malagol, Nagarjun, Rao, Tanuj, Werner, Anna et al.2025 · 6 citationsScientific reports. 2025;15(1):1590
Rpv10.2: A Haplotype Variant of Locus Rpv10 Enables New Combinations for Pyramiding Downy Mildew Resistance Traits in Grapevine.39339604 · Höschele, Tim, Malagol, Nagarjun, Bori, Salvador Olivella et al.2024 · 2 citationsPlants (Basel, Switzerland). 2024;13(18)
Genotyping-by-sequencing-based high-resolution mapping reveals a single candidate gene for the grapevine veraison locus Ver1.38743690 · Frenzke, Lena, Röckel, Franco, Wenke, Torsten et al.2024 · 10 citationsPlant physiology. 2024;196(1):244-260
Non-destructive quantification of key quality characteristics in individual grapevine berries using near-infrared spectroscopy.39036356 · Cornehl, Lucie, Gauweiler, Pascal, Zheng, Xiaorong et al.2026 · 4 citationsFrontiers in plant science. 2024;15:1386951
Wild grapes of Armenia: unexplored source of genetic diversity and disease resistance.38143573 · Margaryan, Kristine, Töpfer, Reinhard, Gasparyan, Boris et al.2023 · 21 citationsFrontiers in plant science. 2023;14:1276764
Deep incorporation of organic amendments into soils of a 'Calardis Musqué' vineyard: effects on greenhouse gas emissions, vine vigor, and grape quality.38034571 · Schneider, Nele, Islam, Muhammad, Wehrle, Ralf et al.2023 · 8 citationsFrontiers in plant science. 2023;14:1253458
Determination of Sugars and Acids in Grape Must Using Miniaturized Near-Infrared Spectroscopy.37300013 · Cornehl, Lucie, Krause, Julius, Zheng, Xiaorong et al.2023 · 13 citationsSensors (Basel, Switzerland). 2023;23(11)
Phased grapevine genome sequence of an Rpv12 carrier for biotechnological exploration of resistance to Plasmopara viticola.37223784 · Frommer, Bianca, Müllner, Sophia, Holtgräwe, Daniela et al.2023 · 12 citationsFrontiers in plant science. 2023;14:1180982
Grouping Shapley Value Feature Importances of Random Forests for explainable Yield Prediction2304.07111v1 · Florian Huber, Hannes Engler, Anna Kicherer et al.2023 · 6 citationsarXiv
Comparative Study on Grape Berry Anthocyanins of Various Teinturier Varieties.36429259 · Kőrösi, László, Molnár, Szilárd, Teszlák, Péter et al.2022 · 37 citationsFoods (Basel, Switzerland). 2022;11(22)
A fully phased interspecific grapevine rootstock genome sequence representing V. riparia and V. cinerea and allele-aware annotation of the phylloxera resistance locus Rdv110.1101/2022.07.07.499180v2 · Frommer, B., Hausmann, L., Holtgraewe, D. L. et al.2022 · 2 citationsbioRxiv
A cool climate perspective on grapevine breeding: climate change and sustainability are driving forces for changing varieties in a traditional market.35389053 · Töpfer, Reinhard, Trapp, Oliver2022 · 78 citationsTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik. 2022;135(11):3947-3960
A 69 kbp Deletion at the Berry Color Locus Is Responsible for Berry Color Recovery in Vitis vinifera L. Cultivar 'Riesling Rot'.35409066 · Röckel, Franco, Moock, Carina, Schwander, Florian et al.2022 · 6 citationsInternational journal of molecular sciences. 2022;23(7)
Towards Sensor-Based Phenotyping of Physical Barriers of Grapes to Improve Resilience to Botrytis Bunch Rot.35222454 · Herzog, Katja, Schwander, Florian, Kassemeyer, Hanns-Heinz et al.2022 · 22 citationsFrontiers in plant science. 2021;12:808365
PhenoApp: A mobile tool for plant phenotyping to record field and greenhouse observations.36636476 · Röckel, Franco, Schreiber, Toni, Schüler, Danuta et al.2023 · 23 citationsF1000Research. 2022;11:12
Grapevine and Wine Metabolomics-Based Guidelines for FAIR Data and Metadata Management.34822415 · Savoi, Stefania, Arapitsas, Panagiotis, Duchêne, Éric et al.2021 · 29 citationsMetabolites. 2021;11(11)
Transcriptomic analysis of temporal shifts in berry development between two grapevine cultivars of the Pinot family reveals potential genes controlling ripening time.34233614 · Theine, Jens, Holtgräwe, Daniela, Herzog, Katja et al.2021 · 32 citationsBMC plant biology. 2021;21(1):327
Confirmation and Fine Mapping of the Resistance Locus Ren9 from the Grapevine Cultivar 'Regent'.33374373 · Zendler, Daniel, Töpfer, Reinhard, Zyprian, Eva2021 · 43 citationsPlants (Basel, Switzerland). 2020;10(1)
RNA-Seq Time Series of Vitis vinifera Bud Development Reveals Correlation of Expression Patterns with the Local Temperature Profile.33198137 · Pucker, Boas, Schwandner, Anna, Becker, Sarah et al.2020 · 14 citationsPlants (Basel, Switzerland). 2020;9(11)
Evaluating the suitability of hyper- and multispectral imaging to detect foliar symptoms of the grapevine trunk disease Esca in vineyards.33101451 · Bendel, Nele, Kicherer, Anna, Backhaus, Andreas et al.2022 · 43 citationsPlant methods. 2020;16:142
Differential expression of transcription factor- and further growth-related genes correlates with contrasting cluster architecture in Vitis vinifera 'Pinot Noir' and Vitis spp. genotypes.32812062 · Richter, Robert, Rossmann, Susanne, Gabriel, Doreen et al.2021 · 8 citationsTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik. 2020;133(12):3249-3272
Color Intensity of the Red-Fleshed Berry Phenotype of Vitis vinifera Teinturier Grapes Varies Due to a 408 bp Duplication in the Promoter of VvmybA1.32764272 · Röckel, Franco, Moock, Carina, Braun, Ulrike et al.2021 · 38 citationsGenes. 2020;11(8)
Counting of Grapevine Berries in Images via Semantic Segmentation using Convolutional Neural Networks2004.14010v1 · Laura Zabawa, Anna Kicherer, Lasse Klingbeil et al.2020 · 123 citationsJournal of Photogrammetry and Remote Sensing, vol. 164, pp.73-83,2020
Genome Sequences of Both Organelles of the Grapevine Rootstock Cultivar 'Börner'.32273371 · Frommer, Bianca, Holtgräwe, Daniela, Hausmann, Ludger et al.2020 · 5 citationsMicrobiology resource announcements. 2020;9(15)
Same same but different: Cluster architecture variation in five 'Pinot Noir' selection lines correlates with differential expression of three transcription factors and further growth related genes10.1101/2020.03.17.993907v1 · Richter, R., Rossmann, S., Gabriel, D. et al.2020 · 1 citationbioRxiv
A Partially Phase-Separated Genome Sequence Assembly of the Vitis Rootstock 'Börner' (Vitis riparia × Vitis cinerea) and Its Exploitation for Marker Development and Targeted Mapping.32194587 · Holtgräwe, Daniela, Rosleff Soerensen, Thomas, Hausmann, Ludger et al.2020 · 7 citationsFrontiers in plant science. 2020;11:156
Mutations in the miR396 binding site of the growth-regulating factor gene VvGRF4 modulate inflorescence architecture in grapevine.31663642 · Rossmann, Susanne, Richter, Robert, Sun, Hequan et al.2021 · 30 citationsThe Plant journal : for cell and molecular biology. 2020;101(5):1234-1248
A Partially Phase-Separated Genome Sequence Assembly of the Vitis Rootstock 'Börner' (Vitis riparia x Vitis cinerea) and its Exploitation for Marker Development and Targeted Mapping10.1101/854687v1 · Holtgräwe, D., Hausmann, L., Rosleff Soerensen, T. et al.2019 · 0 citationsbioRxiv
Characterization of genes and alleles involved in the control of flowering time in grapevine.31269026 · Kamal, Nadia, Ochßner, Iris, Schwandner, Anna et al.2020 · 13 citationsPloS one. 2019;14(7):e0214703
Palaeogenomic insights into the origins of French grapevine diversity.31182840 · Ramos-Madrigal, Jazmín, Runge, Anne Kathrine Wiborg, Bouby, Laurent et al.2019 · 133 citationsNature plants. 2019;5(6):595-603
Detection of Single Grapevine Berries in Images Using Fully Convolutional Neural Networks1905.00458v1 · Laura Zabawa, Anna Kicherer, Lasse Klingbeil et al.2019 · 51 citationsCVPR Workshop on Computer Vision Problems in Plant Phenotyping, 2019
Identification of co-located QTLs and genomic regions affecting grapevine cluster architecture.30569367 · Richter, Robert, Gabriel, Doreen, Rist, Florian et al.2019 · 38 citationsTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik. 2019;132(4):1159-1177
An Adaptive Approach for Automated Grapevine Phenotyping using VGG-based Convolutional Neural Networks1811.09561v2 · Jonatan Grimm, Katja Herzog, Florian Rist et al.2018 · 6 citationsarXiv
Automated Phenotyping of Epicuticular Waxes of Grapevine Berries Using Light Separation and Convolutional Neural Networks1807.07343v3 · Pierre Barr'e, Katja Herzog, Rebecca Hofle et al.2018 · 12 citationsarXiv
Efficient identification, localization and quantification of grapevine inflorescences in unprepared field images using Fully Convolutional Networks1807.03770v1 · Robert Rudolph, Katja Herzog, Reinhard Topfer et al.2018 · 16 citationsarXiv
Multi-View Semantic Labeling of 3D Point Clouds for Automated Plant Phenotyping1805.03994v2 · Bernhard Japes, Jennifer Mack, Florian Rist et al.2018 · 9 citationsarXiv
High-Precision Phenotyping of Grape Bunch Architecture Using Fast 3D Sensor and Automation.29498702 · Rist, Florian, Herzog, Katja, Mack, Jenny et al.2018 · 62 citationsSensors (Basel, Switzerland). 2018;18(3)
Extended diversity analysis of cultivated grapevine Vitis vinifera with 10K genome-wide SNPs.29420602 · Laucou, Valérie, Launay, Amandine, Bacilieri, Roberto et al.2018 · 191 citationsPloS one. 2018;13(2):e0192540
Automated Image Analysis Framework for the High-Throughput Determination of Grapevine Berry Sizes Using Conditional Random Fields1712.05647v1 · Ribana Roscher, Katja Herzog, Annemarie Kunkel et al.2017 · 91 citationsComputers and Electronics in Agriculture 100 (2014), 148--158on Valency
Phenoliner: A New Field Phenotyping Platform for Grapevine Research.28708080 · Kicherer, Anna, Herzog, Katja, Bendel, Nele et al.2018 · 68 citationsSensors (Basel, Switzerland). 2017;17(7)
Towards Automated Large-Scale 3D Phenotyping of Vineyards under Field Conditions.27983669 · Rose, Johann Christian, Kicherer, Anna, Wieland, Markus et al.2018 · 73 citationsSensors (Basel, Switzerland). 2016;16(12)
Towards an open grapevine information system.27917288 · Adam-Blondon, A-F, Alaux, M, Pommier, C et al.2020 · 40 citationsHorticulture research. 2016;3:16056
Quantitative trait loci affecting pathogen resistance and ripening of grapevines.27038830 · Zyprian, Eva, Ochßner, Iris, Schwander, Florian et al.2017 · 146 citationsMolecular genetics and genomics : MGG. 2016;291(4):1573-94
Impedance of the grape berry cuticle as a novel phenotypic trait to estimate resistance to Botrytis cinerea.26024417 · Herzog, Katja, Wind, Rolf, Töpfer, Reinhard2015 · 53 citationsSensors (Basel, Switzerland). 2015;15(6):12498-512
Field phenotyping of grapevine growth using dense stereo reconstruction.25943369 · Klodt, Maria, Herzog, Katja, Töpfer, Reinhard et al.2015 · 53 citationsBMC bioinformatics. 2015;16:143
An automated field phenotyping pipeline for application in grapevine research.25730485 · Kicherer, Anna, Herzog, Katja, Pflanz, Michael et al.2015 · 61 citationsSensors (Basel, Switzerland). 2015;15(3):4823-36
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