JM

Jintao Meng

0000-0002-6208-4102

cs.DCdeep learningProteinsbioinformaticsiPS cell reprogrammingNeural Networks, ComputerSoftwareAlgorithmsArtificial Intelligenceattention-based model

On Valency

published · living versions

Physics-based simulation unlocks scaling laws for generalizable MRI reconstruction

with Hong Shang, Zijian Zhan, Sen Jia, Xiang Fan +8

1 version

W_pct5ewkxv1 · current

Preprints & journals

19 papers in the corpus · 2014–2026

FalconGEMM: Surpassing Hardware Peaks with Lower-Complexity Matrix Multiplication

Honglin Zhu, Jiaping Cao, Jiang Shao et al.

0 citations

2605.06057v42026arXiv

Decoding circRNA translation: challenges and advances in computational method development.

Zhang, Jingjing, Zhou, Rui, Zhang, Huiling et al.

8 citations

407992162025Frontiers in genetics. 2025;16:1654305

Learning the native-like codons with a 5'UTR and RNA secondary structure aided species-informed transformer model

Hu, Q., Tian, X., Li, Y. et al.

1 citation

10.1101/2025.07.19.665668v32025bioRxiv

SeedHit: A GPU Friendly Pre-Align Filtering Algorithm.

Ju, Zhen, Zhang, Jingjing, Li, Xuelei et al.

3 citations

389050832025IEEE/ACM transactions on computational biology and bioinformatics. 2024;21(6):1794-1802

OpenDock: a pytorch-based open-source framework for protein-ligand docking and modelling.

Hu, Qiuyue, Wang, Zechen, Meng, Jintao et al.

7 citations

394326832024Bioinformatics (Oxford, England). 2024;40(11)

Attention-Guided Residual U-Net with SE Connection and ASPP for Watershed-Based Cell Segmentation in Microscopy Images.

Niyogisubizo, Jovial, Zhao, Keliang, Meng, Jintao et al.

5 citations

394225802025Journal of computational biology : a journal of computational molecular cell biology. 2025;32(2):225-237

Vortex: Efficient Sample-Free Dynamic Tensor Program Optimization via Hardware-aware Strategy Space Hierarchization

Yangjie Zhou, Honglin Zhu, Qian Qiu et al.

0 citations

2409.01075v12024arXiv

A Weakly Supervised Learning Method for Cell Detection and Tracking Using Incomplete Initial Annotations.

Wu, Hao, Niyogisubizo, Jovial, Zhao, Keliang et al.

6 citations

380032172023International journal of molecular sciences. 2023;24(22)

zPoseScore model for accurate and robust protein-ligand docking pose scoring in CASP15.

Shen, Tao, Liu, Fuxu, Wang, Zechen et al.

10 citations

376061942023Proteins. 2023;91(12):1837-1849

SWsnn: A Novel Simulator for Spiking Neural Networks.

Wang, Zhichao, Li, Xuelei, Fan, Jianping et al.

1 citation

375856152023Journal of computational biology : a journal of computational molecular cell biology. 2023;30(9):951-960

Autism Spectrum Disorder Classification with Interpretability in Children based on Structural MRI Features Extracted using Contrastive Variational Autoencoder

Ruimin Ma, Ruitao Xie, Yanlin Wang et al.

15 citations

2307.00976v22023Big Data Mining and Analytics, 2024, 7(3): 781-793

Exploiting Scratchpad Memory for Deep Temporal Blocking: A case study for 2D Jacobian 5-point iterative stencil kernel (j2d5pt)

Lingqi Zhang, Mohamed Wahib, Peng Chen et al.

0 citations

2306.03336v12023arXiv

Revisiting Temporal Blocking Stencil Optimizations

Lingqi Zhang, Mohamed Wahib, Peng Chen et al.

13 citations

2305.07390v12023arXiv

Inter-Residue Distance Prediction From Duet Deep Learning Models.

Zhang, Huiling, Huang, Ying, Bei, Zhendong et al.

9 citations

356519302022Frontiers in genetics. 2022;13:887491

Improving protein-ligand docking and screening accuracies by incorporating a scoring function correction term.

Zheng, Liangzhen, Meng, Jintao, Jiang, Kai et al.

134 citations

352893592022Briefings in bioinformatics. 2022;23(3)

PERKS: a Locality-Optimized Execution Model for Iterative Memory-bound GPU Applications

Lingqi Zhang, Mohamed Wahib, Peng Chen et al.

13 citations

2204.02064v42022arXiv

Boosting the predictive performance with aqueous solubility dataset curation.

Meng, Jintao, Chen, Peng, Wahib, Mohamed et al.

34 citations

352416932022Scientific data. 2022;9(1):71

Counting Kmers for Biological Sequences at Large Scale.

Ge, Jianqiu, Meng, Jintao, Guo, Ning et al.

10 citations

317348732020Interdisciplinary sciences, computational life sciences. 2020;12(1):99-108

SWAP-Assembler: scalable and efficient genome assembly towards thousands of cores.

Meng, Jintao, Wang, Bingqiang, Wei, Yanjie et al.

41 citations

252535332014BMC bioinformatics. 2014;15 Suppl 9:S2

Career total: 70 works. 19 are in this corpus.

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