DP
Dariusz Przybylski
SoftwareAlgorithmsapoptosisautoimmunityBiological ClocksBiological Evolutionbone marrow nicheCD95cell biologyCell Differentiation
On Valency
published · living versionsW_26xzgw86·v1 · currentpublished
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
with Keith R. Bradnam, Joseph N. Fass, Anton Alexandrov, Paul Baranay +86
1 version
Preprints & journals
24 papers in the corpus · 2001–2022DNA read count calibration for single-molecule, long-read sequencing.36319642 · Soares, Luis M M, Hanscom, Terrence, Selby, Donald E et al.2022 · 8 citationsScientific reports. 2022;12(1):17257
A transcriptomic taxonomy of Drosophila circadian neurons around the clock.33438579 · Ma, Dingbang, Przybylski, Dariusz, Abruzzi, Katharine C et al.2022 · 137 citationseLife. 2021;10
Lipid availability determines fate of skeletal progenitor cells via SOX9.32103177 · van Gastel, Nick, Stegen, Steve, Eelen, Guy et al.2020 · 233 citationsNature. 2020;579(7797):111-117
A Cellular Taxonomy of the Bone Marrow Stroma in Homeostasis and Leukemia.31130381 · Baryawno, Ninib, Przybylski, Dariusz, Kowalczyk, Monika S et al.2020 · 890 citationsCell. 2019;177(7):1915-1932.e16
A cellular taxonomy of the bone marrow stroma in homeostasis and leukemia demonstrates cancer-crosstalk with stroma to impair normal tissue function10.1101/556845v1 · Baryawno, N., Przybylski, D., Kowalczyk, M. et al.2019 · 1 citationbioRxiv
Fas Promotes T Helper 17 Cell Differentiation and Inhibits T Helper 1 Cell Development by Binding and Sequestering Transcription Factor STAT1.29562202 · Meyer Zu Horste, Gerd, Przybylski, Dariusz, Schramm, Markus A et al.2018 · 72 citationsImmunity. 2018;48(3):556-569.e7
Cancer immunogenomic approach to neoantigen discovery in a checkpoint blockade responsive murine model of oral cavity squamous cell carcinoma.29423108 · Zolkind, Paul, Przybylski, Dariusz, Marjanovic, Nemanja et al.2022 · 43 citationsOncotarget. 2018;9(3):4109-4119
An Integrative Framework Reveals Signaling-to-Transcription Events in Toll-like Receptor Signaling.28658630 · Mertins, Philipp, Przybylski, Dariusz, Yosef, Nir et al.2018 · 28 citationsCell reports. 2017;19(13):2853-2866
A Genome-wide CRISPR Screen in Primary Immune Cells to Dissect Regulatory Networks.26189680 · Parnas, Oren, Jovanovic, Marko, Eisenhaure, Thomas M et al.2015 · 440 citationsCell. 2015;162(3):675-86
Immunogenetics. Dynamic profiling of the protein life cycle in response to pathogens.25745177 · Jovanovic, Marko, Rooney, Michael S, Mertins, Philipp et al.2015 · 460 citationsScience (New York, N.Y.). 2015;347(6226):1259038
Changes in nucleosome occupancy associated with metabolic alterations in aged mammalian liver.25437555 · Bochkis, Irina M, Przybylski, Dariusz, Chen, Jenny et al.2015 · 77 citationsCell reports. 2014;9(3):996-1006
The genomic substrate for adaptive radiation in African cichlid fish.25186727 · Brawand, David, Wagner, Catherine E, Li, Yang I et al.2014 · 987 citationsNature. 2014;513(7518):375-381
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species.23870653 · Bradnam, Keith R, Fass, Joseph N, Alexandrov, Anton et al.2014 · 671 citationsGigaScience. 2013;2(1):10
The African coelacanth genome provides insights into tetrapod evolution.23598338 · Amemiya, Chris T, Alföldi, Jessica, Lee, Alison P et al.2013 · 670 citationsNature. 2013;496(7445):311-6
Finished bacterial genomes from shotgun sequence data.22829535 · Ribeiro, Filipe J, Przybylski, Dariusz, Yin, Shuangye et al.2013 · 211 citationsGenome research. 2012;22(11):2270-7
Assemblathon 1: a competitive assessment of de novo short read assembly methods.21926179 · Earl, Dent, Bradnam, Keith, St John, John et al.2012 · 507 citationsGenome research. 2011;21(12):2224-41
High-quality draft assemblies of mammalian genomes from massively parallel sequence data.21187386 · Gnerre, Sante, Maccallum, Iain, Przybylski, Dariusz et al.2011 · 1,533 citationsProceedings of the National Academy of Sciences of the United States of America. 2011;108(4):1513-8
ALLPATHS 2: small genomes assembled accurately and with high continuity from short paired reads.19796385 · Maccallum, Iain, Przybylski, Dariusz, Gnerre, Sante et al.2010 · 179 citationsGenome biology. 2009;10(10):R103
Powerful fusion: PSI-BLAST and consensus sequences.18678588 · Przybylski, Dariusz, Rost, Burkhard2008 · 10 citationsBioinformatics (Oxford, England). 2008;24(18):1987-93
Consensus sequences improve PSI-BLAST through mimicking profile-profile alignments.17369271 · Przybylski, Dariusz, Rost, Burkhard2007 · 12 citationsNucleic acids research. 2007;35(7):2238-46
Improving fold recognition without folds.15312777 · Przybylski, Dariusz, Rost, Burkhard2004 · 53 citationsJournal of molecular biology. 2004;341(1):255-69
CAFASP3 in the spotlight of EVA.14579345 · Eyrich, Volker A, Przybylski, Dariusz, Koh, Ingrid Y Y et al.2004 · 30 citationsProteins. 2003;53 Suppl 6:548-60
Alignments grow, secondary structure prediction improves.11807948 · Przybylski, Dariusz, Rost, Burkhard2002 · 206 citationsProteins. 2002;46(2):197-205
EVA: continuous automatic evaluation of protein structure prediction servers.11751240 · Eyrich, V A, Martí-Renom, M A, Przybylski, D et al.2002 · 203 citationsBioinformatics (Oxford, England). 2001;17(12):1242-3
Career total: 32 works. 24 are in this corpus.
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