DE
Dent Earl
GenomeSoftwareAlgorithmsbioinformaticsgenomicsalgorithmsBiological EvolutionChromosome Mappingcomputational molecular biologyComputer Graphics
On Valency
published · living versionsW_26xzgw86·v1 · currentpublished
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
with Keith R. Bradnam, Joseph N. Fass, Anton Alexandrov, Paul Baranay +86
1 version
Preprints & journals
17 papers in the corpus · 2007–2018Sixteen diverse laboratory mouse reference genomes define strain-specific haplotypes and novel functional loci.30275530 · Lilue, Jingtao, Doran, Anthony G, Fiddes, Ian T et al.2019 · 267 citationsNature genetics. 2018;50(11):1574-1583
Comparative Annotation Toolkit (CAT)-simultaneous clade and personal genome annotation.29884752 · Fiddes, Ian T, Armstrong, Joel, Diekhans, Mark et al.2018 · 138 citationsGenome research. 2018;28(7):1029-1038
Multiple laboratory mouse reference genomes define strain specific haplotypes and novel functional loci10.1101/235838v1 · Lilue, J., Doran, A. G., Fiddes, I. T. et al.2018 · 10 citationsbioRxiv
Building a pan-genome reference for a population.25565268 · Nguyen, Ngan, Hickey, Glenn, Zerbino, Daniel R et al.2016 · 54 citationsJournal of computational biology : a journal of computational molecular cell biology. 2015;22(5):387-401
Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs.25504731 · Green, Richard E, Braun, Edward L, Armstrong, Joel et al.2014 · 359 citationsScience (New York, N.Y.). 2014;346(6215):1254449
Alignathon: a competitive assessment of whole-genome alignment methods.25273068 · Earl, Dent, Nguyen, Ngan, Hickey, Glenn et al.2015 · 119 citationsGenome research. 2014;24(12):2077-89
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species.23870653 · Bradnam, Keith R, Fass, Joseph N, Alexandrov, Anton et al.2014 · 671 citationsGigaScience. 2013;2(1):10
HAL: a hierarchical format for storing and analyzing multiple genome alignments.23505295 · Hickey, Glenn, Paten, Benedict, Earl, Dent et al.2013 · 290 citationsBioinformatics (Oxford, England). 2013;29(10):1341-2
Retrotransposition of gene transcripts leads to structural variation in mammalian genomes.23497673 · Ewing, Adam D, Ballinger, Tracy J, Earl, Dent et al.2015 · 117 citationsGenome biology. 2013;14(3):R22
Identification of recent hybridization between gray wolves and domesticated dogs by SNP genotyping.23064780 · vonHoldt, Bridgett M, Pollinger, John P, Earl, Dent A et al.2013 · 58 citationsMammalian genome : official journal of the International Mammalian Genome Society. 2013;24(1-2):80-8
Assemblathon 1: a competitive assessment of de novo short read assembly methods.21926179 · Earl, Dent, Bradnam, Keith, St John, John et al.2012 · 507 citationsGenome research. 2011;21(12):2224-41
Cactus: Algorithms for genome multiple sequence alignment.21665927 · Paten, Benedict, Earl, Dent, Nguyen, Ngan et al.2012 · 260 citationsGenome research. 2011;21(9):1512-28
A genome-wide perspective on the evolutionary history of enigmatic wolf-like canids.21566151 · vonHoldt, Bridgett M, Pollinger, John P, Earl, Dent A et al.2012 · 343 citationsGenome research. 2011;21(8):1294-305
Cactus graphs for genome comparisons.21385048 · Paten, Benedict, Diekhans, Mark, Earl, Dent et al.2011 · 106 citationsJournal of computational biology : a journal of computational molecular cell biology. 2011;18(3):469-81
Inference of patient-specific pathway activities from multi-dimensional cancer genomics data using PARADIGM.20529912 · Vaske, Charles J, Benz, Stephen C, Sanborn, J Zachary et al.2010 · 786 citationsBioinformatics (Oxford, England). 2010;26(12):i237-45
Genome-wide SNP and haplotype analyses reveal a rich history underlying dog domestication.20237475 · Vonholdt, Bridgett M, Pollinger, John P, Lohmueller, Kirk E et al.2010 · 808 citationsNature. 2010;464(7290):898-902
The genealogy and genetic viability of reintroduced Yellowstone grey wolves.17877715 · Vonholdt, Bridgett M, Stahler, Daniel R, Smith, Douglas W et al.2008 · 230 citationsMolecular ecology. 2008;17(1):252-74
Career total: 39 works. 17 are in this corpus.
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