YJ
Yuanfeng Ji
cs.CVcs.AIeess.IVcs.LGNeoplasmsImage Processing, Computer-Assistedcs.CLImage Interpretation, Computer-Assisted3D medical shapesAlgorithms
On Valency
published · living versionsW_bt9a2shm·v1 · currentpublished
MedVTok: A General-Purpose Medical Visual Tokenizer
with Chenglong Ma, Junzhi Ning, Jiyao Liu, Yujie Wei +16
1 version
Preprints & journals
39 papers in the corpus · 2018–2026MedSegAgent: A Universal and Scalable Multi-Agent System for Instructive Medical Image Segmentation.41880261 · Huang, Ziyan, Wang, Haoyu, Ye, Jin et al.2026 · 2 citationsIEEE journal of biomedical and health informatics. 2026;30(10):8751-8762
PaperDoctor: Evidence-Grounded and Actionable Feedback for Scientific Papers in Progress2609.16995v1 · Kevin Qinghong Lin, Siyuan Hu, Pan Lu et al.2026 · 0 citationsarXiv
Ensemble learning of pathology foundation models for precision oncology.42721959 · Luo, Xiangde, Wang, Xiyue, Eweje, Feyisope et al.2026 · 3 citationsCancer cell. 2026;44(10):1981-1996.e8
SlideChat is a multimodal generative artificial intelligence assistant for whole-slide computational pathology across cancer types.42680939 · Chen, Ying, Ma, Chenglong, Li, Qiongqiong et al.2026 · 1 citationNature cancer. 2026;7(9):1454-1468
nnMIL: a generalizable multiple instance learning framework for computational pathology.42642650 · Luo, Xiangde, Xiang, Jinxi, Ji, Yuanfeng et al.2026 · 2 citationsNature biomedical engineering. 2026
Evidence-Grounded AI for Musculoskeletal Care2607.12527v3 · Wenjie Li, Yujie Zhang, Fanrui Zhang et al.2026 · 0 citationsarXiv
RoboDojo: A Unified Sim-and-Real Benchmark for Comprehensive Evaluation of Generalist Robot Manipulation Policies2607.04434v3 · Tianxing Chen, Yue Chen, Zixuan Li et al.2026 · 0 citationsarXiv
TUA-Bench: A Benchmark for General-Purpose Terminal-Use Agents2606.28480v1 · Shoufa Chen, Luyuan Wang, Xuan Yang et al.2026 · 0 citationsarXiv
SP-Mind: An Autonomous Reasoning Agent for Spatial Proteomics Analysis2606.24235v2 · Yucheng Yuan, Yuanfeng Ji, Zhongxiao Li et al.2026 · 0 citationsProceedings of the 43rd International Conference on Machine Learning (ICML 2026), PMLR 306:151849-151872, 2026
Cellular architecture and neighborhood-informed virtual spatial tumor profiling from histopathology.42302781 · Li, Yuchen, Li, Zhe, Quinton, Ryan et al.2026 · 10 citationsCell. 2026;189(14):4241-4259.e9
A Generative Foundation Model for Multimodal Histopathology2604.03635v1 · Jinxi Xiang, Mingjie Li, Siyu Hou et al.2026 · 0 citationsarXiv
Project Imaging-X: A Survey of 1000+ Open-Access Medical Imaging Datasets for Foundation Model Development2603.27460v1 · Zhongying Deng, Cheng Tang, Ziyan Huang et al.2026 · 0 citationsarXiv
UniMedVL: Unifying Medical Multimodal Understanding and Generation through Observation-Knowledge-Analysis2510.15710v3 · Junzhi Ning, Wei Li, Cheng Tang et al.2025 · 0 citationsarXiv
A Generative Foundation Model for Chest Radiography2509.03903v1 · Yuanfeng Ji, Dan Lin, Xiyue Wang et al.2025 · 3 citationsarXiv
Pancancer outcome prediction via a unified weakly supervised deep learning model.40897689 · Yuan, Wei, Chen, Yijiang, Zhu, Biyue et al.2025 · 33 citationsSignal transduction and targeted therapy. 2025;10(1):285
A Survey of Scientific Large Language Models: From Data Foundations to Agent Frontiers2508.21148v2 · Ming Hu, Chenglong Ma, Wei Li et al.2025 · 1 citationarXiv
Unified Medical Image Tokenizer for Autoregressive Synthesis and Understanding2505.19225v2 · Chenglong Ma, Yuanfeng Ji, Jin Ye et al.2025 · 0 citationsarXiv
RetinaLogos: Fine-Grained Synthesis of High-Resolution Retinal Images Through Captions2505.12887v3 · Junzhi Ning, Cheng Tang, Kaijing Zhou et al.2025 · 2 citationsarXiv
SynLS: A novel diffusion-transformer framework for generating high-quality wearable sensor time series data to enhance health monitoring10.1101/2025.05.11.653212v1 · Lin, D., Ji, Y., McArt, J. et al.2025 · 1 citationbioRxiv
GMAI-VL-R1: Harnessing Reinforcement Learning for Multimodal Medical Reasoning2504.01886v1 · Yanzhou Su, Tianbin Li, Jiyao Liu et al.2025 · 0 citationsarXiv
Towards Interpretable Counterfactual Generation via Multimodal Autoregression2503.23149v2 · Chenglong Ma, Yuanfeng Ji, Jin Ye et al.2025 · 5 citationsarXiv
MedShapeNet - a large-scale dataset of 3D medical shapes for computer vision.39733351 · Li, Jianning, Zhou, Zongwei, Yang, Jiancheng et al.2025 · 47 citationsBiomedizinische Technik. Biomedical engineering. 2025;70(1):71-90
GMAI-VL & GMAI-VL-5.5M: A Large Vision-Language Model and A Comprehensive Multimodal Dataset Towards General Medical AI2411.14522v2 · Tianbin Li, Yanzhou Su, Wei Li et al.2024 · 6 citationsarXiv
SegBook: A Simple Baseline and Cookbook for Volumetric Medical Image Segmentation2411.14525v1 · Jin Ye, Ying Chen, Yanjun Li et al.2024 · 1 citationarXiv
Artificial Intelligence-Enhanced Couinaud Segmentation for Precision Liver Cancer Therapy2411.02815v1 · Liang Qiu, Wenhao Chi, Xiaohan Xing et al.2024 · 1 citationarXiv
CompGS: Unleashing 2D Compositionality for Compositional Text-to-3D via Dynamically Optimizing 3D Gaussians2410.20723v1 · Chongjian Ge, Chenfeng Xu, Yuanfeng Ji et al.2024 · 3 citationsarXiv
SlideChat: A Large Vision-Language Assistant for Whole-Slide Pathology Image Understanding2410.11761v3 · Ying Chen, Guoan Wang, Yuanfeng Ji et al.2024 · 25 citationsarXiv
Large Language Models as Automated Aligners for benchmarking Vision-Language Models2311.14580v1 · Yuanfeng Ji, Chongjian Ge, Weikai Kong et al.2023 · 1 citationarXiv
SyNDock: N Rigid Protein Docking via Learnable Group Synchronization2305.15156v2 · Yuanfeng Ji, Yatao Bian, Guoji Fu et al.2023 · 2 citationsarXiv
DDP: Diffusion Model for Dense Visual Prediction2303.17559v2 · Yuanfeng Ji, Zhe Chen, Enze Xie et al.2023 · 161 citationsarXiv
TAGNet: Learning Configurable Context Pathways for Semantic Segmentation.35471871 · Lin, Di, Shen, Dingguo, Ji, Yuanfeng et al.2023 · 4 citationsIEEE transactions on pattern analysis and machine intelligence. 2023;45(2):2475-2491
The Medical Segmentation Decathlon.35840566 · Antonelli, Michela, Reinke, Annika, Bakas, Spyridon et al.2022 · 1,372 citationsNature communications. 2022;13(1):4128
AMOS: A Large-Scale Abdominal Multi-Organ Benchmark for Versatile Medical Image Segmentation2206.08023v3 · Yuanfeng Ji, Haotian Bai, Jie Yang et al.2022 · 316 citationsarXiv
DrugOOD: Out-of-Distribution (OOD) Dataset Curator and Benchmark for AI-aided Drug Discovery -- A Focus on Affinity Prediction Problems with Noise Annotations2201.09637v1 · Yuanfeng Ji, Lu Zhang, Jiaxiang Wu et al.2022 · 19 citationsarXiv
Multi-frame Collaboration for Effective Endoscopic Video Polyp Detection via Spatial-Temporal Feature Transformation2107.03609v1 · Lingyun Wu, Zhiqiang Hu, Yuanfeng Ji et al.2021 · 37 citationsarXiv
Multi-Compound Transformer for Accurate Biomedical Image Segmentation2106.14385v1 · Yuanfeng Ji, Ruimao Zhang, Huijie Wang et al.2021 · 186 citationsarXiv
UXNet: Searching Multi-level Feature Aggregation for 3D Medical Image Segmentation2009.07501v1 · Yuanfeng Ji, Ruimao Zhang, Zhen Li et al.2020 · 21 citationsarXiv
PRSNet: Part Relation and Selection Network for Bone Age Assessment1909.05651v1 · Yuanfeng Ji, Hao Chen, Dan Lin et al.2019 · 23 citationsarXiv
SCN: Switchable Context Network for Semantic Segmentation of RGB-D Images.30582564 · Lin, Di, Zhang, Ruimao, Ji, Yuanfeng et al.2020 · 87 citationsIEEE transactions on cybernetics. 2020;50(3):1120-1131
Career total: 62 works. 39 are in this corpus.
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