PA
Pablo Arbelaez
cs.CVcs.AIcs.LGeess.IVartificial intelligenceImage Processing, Computer-AssistedAlgorithmsastro-ph.IMcs.SDNeural Networks, Computer
On Valency
published · living versionsW_ctyr365s·v1 · currentpublished
Identifying the Best Machine Learning Algorithms for Brain Tumor Segmentation, Progression Assessment, and Overall Survival Prediction in the BRATS Challenge
with Spyridon Bakas, Mauricio Reyes, Andras Jakab, Stefan Bauer +422
1 version
W_wbz6kv23·v1published
Preprints & journals
96 papers in the corpus · 2011–2026Beyond Volume Overlap: Surface Matching for Topology-Aware Coronary Artery Segmentation2609.31740v1 · Rafael Velasquez, Esther Puyol-Ant'on, Pablo Arbel'aez2026 · 0 citationsarXiv
Hyperbolic Contrastive Learning with Entailment for Spatial Transcriptomics2609.16207v1 · Daniela Vega, Paula C'ardenas, Hannah Ceballos et al.2026 · 0 citationsarXiv
Efficient Passive Acoustic Monitoring of Killer Whales Using a Two-Stage Detection and Ecotype Classification Cascade2609.01792v1 · Daniela Ruiz, Manuel Castellote, Zhongqi Miao et al.2026 · 0 citationsarXivon Valency
Overhead Wildlife Locator (OWL): Benchmarking Weakly Supervised Learning for Aerial Wildlife Surveys2606.13911v1 · Isai Daniel Chac'on, Zhongqi Miao, Bruno Demuro et al.2026 · 0 citationsarXiv
Project SPARROW and the Future of Conservation Technology2606.00108v1 · Juan M. Lavista Ferres, Carl Chalmers, Bruno Demuro Segundo et al.2026 · 0 citationsarXiv
A strongly annotated passive acoustic dataset for tropical bird monitoring2605.20578v2 · Daniela Ruiz, Juan Sebasti'an Ulloa, Zhongqi Miao et al.2026 · 0 citationsarXiv
Heartbeat: a multimodal dataset of fetal echocardiography and clinical metadata for early detection of congenital heart disease.42064861 · Rodríguez, Santiago, Pérez, Alejandra, Echeverry, Lina Marcela et al.2026 · 0 citationsFrontiers in cardiovascular medicine. 2026;13:1726484
Comparative validation of surgical phase recognition, instrument keypoint estimation, and instrument instance segmentation in endoscopy: Results of the PhaKIR 2024 challenge.41564633 · Rueckert, Tobias, Rauber, David, Maerkl, Raphaela et al.2026 · 7 citationsMedical image analysis. 2026;109:103945
A Standardized Benchmark for Multilabel Antimicrobial Peptide Classification2511.04814v1 · Sebastian Ojeda, Rafael Velasquez, Nicol'as Aparicio et al.2025 · 5 citationsarXiv
Towards Automated Petrography2511.00328v1 · Isai Daniel Chac'on, Paola Ruiz Puentes, Jillian Pearse et al.2025 · 0 citationsarXiv
Ego4D: Around the World in 3,600 Hours of Egocentric Video.39058617 · Grauman, Kristen, Westbury, Andrew, Byrne, Eugene et al.2025 · 16 citationsIEEE transactions on pattern analysis and machine intelligence. 2025;47(11):9468-9509
CARDIUM: Congenital Anomaly Recognition with Diagnostic Images and Unified Medical records2510.15208v2 · Daniela Vega, Hannah V. Ceballos, Javier S. Vera et al.2025 · 3 citationsarXiv
Latent Gene Diffusion for Spatial Transcriptomics Completion2509.01864v1 · Paula C'ardenas, Leonardo Manrique, Daniela Vega et al.2025 · 1 citationarXiv
Completing spatial transcriptomics data for gene expression prediction benchmarking.40885036 · Ruiz, Daniela, Cárdenas, Paula, Manrique, Leonardo et al.2025 · 4 citationsMedical image analysis. 2025;106:103754
Pixel-wise recognition for holistic surgical scene understanding.40774098 · Ayobi, Nicolás, Rodríguez, Santiago, Pérez, Alejandra et al.2025 · 27 citationsMedical image analysis. 2025;106:103726
PitVis-2023 challenge: Workflow recognition in videos of endoscopic pituitary surgery.40769094 · Das, Adrito, Khan, Danyal Z, Psychogyios, Dimitrios et al.2025 · 11 citationsMedical image analysis. 2025;106:103716
A new benchmark for machine learning applied to powder X-ray diffraction.40640253 · Rincón, Sergio, González, Gabriel, Macías, Mario A et al.2025 · 4 citationsScientific data. 2025;12(1):1186
Deep-TAO: The Deep Learning Transient Astronomical Object data set for Astronomical Transient Event Classification2503.16714v1 · John F. Su'arez-P'erez, Catalina G'omez, Mauricio Neira et al.2025 · 0 citationsarXiv
Multi-Center Fetal Brain Tissue Annotation (FeTA) Challenge 2022 Results.39475746 · Payette, Kelly, Steger, Celine, Licandro, Roxane et al.2025 · 23 citationsIEEE transactions on medical imaging. 2025;44(3):1257-1272
Invited commentary: deep learning-methods to amplify epidemiologic data collection and analyses.39013794 · Quistberg, D Alex, Mooney, Stephen J, Tasdizen, Tolga et al.2025 · 5 citationsAmerican journal of epidemiology. 2025;194(2):322-326
EgoCast: Forecasting Egocentric Human Pose in the Wild2412.02903v1 · Maria Escobar, Juanita Puentes, Cristhian Forigua et al.2024 · 3 citationsarXiv
SMILE-UHURA Challenge -- Small Vessel Segmentation at Mesoscopic Scale from Ultra-High Resolution 7T Magnetic Resonance Angiograms2411.09593v3 · Soumick Chatterjee, Hendrik Mattern, Marc Dorner et al.2024 · 6 citationsarXiv
Nuclei Detection and Segmentation of Histopathological Images Using a Feature Pyramidal Network Variant of a Mask R-CNN.39451370 · Ramakrishnan, Vignesh, Artinger, Annalena, Daza Barragan, Laura Alexandra et al.2024 · 8 citationsBioengineering (Basel, Switzerland). 2024;11(10)
Deep Learning at the Intersection: Certified Robustness as a Tool for 3D Vision2408.13135v1 · Gabriel P'erez S, Juan C. P'erez, Motasem Alfarra et al.2024 · 0 citationsarXiv
MuST: Multi-Scale Transformers for Surgical Phase Recognition2407.17361v1 · Alejandra P'erez, Santiago Rodr'iguez, Nicol'as Ayobi et al.2024 · 12 citationsarXiv
SpaRED benchmark: Enhancing Gene Expression Prediction from Histology Images with Spatial Transcriptomics Completion2407.13027v2 · Gabriel Mejia, Daniela Ruiz, Paula C'ardenas et al.2024 · 0 citationsarXiv
SuperFormer: Volumetric Transformer Architectures for MRI Super-Resolution2406.03359v1 · Cristhian Forigua, Maria Escobar, Pablo Arbelaez2024 · 28 citations7th International Workshop, SASHIMI 2022, Held in Conjunction with MICCAI 2022, Singapore, September 18, 2022, Proceedings
Pytorch-Wildlife: A Collaborative Deep Learning Framework for Conservation2405.12930v4 · Andres Hernandez, Zhongqi Miao, Luisa Vargas et al.2024 · 7 citationsarXiv
Road Traffic Injuries and the Built Environment in Bogotá, Colombia, 2015-2019: A Cross-Sectional Analysis.38589673 · Zewdie, Hiwot Y, Sarmiento, Olga Lucia, Pinzón, Jose David et al.2024 · 15 citationsJournal of urban health : bulletin of the New York Academy of Medicine. 2024;101(4):815-826
SAR-RARP50: Segmentation of surgical instrumentation and Action Recognition on Robot-Assisted Radical Prostatectomy Challenge2401.00496v2 · Dimitrios Psychogyios, Emanuele Colleoni, Beatrice Van Amsterdam et al.2023 · 10 citationsarXiv
Adaptive Guidance: Training-free Acceleration of Conditional Diffusion Models2312.12487v1 · Angela Castillo, Jonas Kohler, Juan C. P'erez et al.2023 · 7 citationsarXiv
Ego-Exo4D: Understanding Skilled Human Activity from First- and Third-Person Perspectives2311.18259v4 · Kristen Grauman, Andrew Westbury, Lorenzo Torresani et al.2023 · 138 citationsarXiv
Multimodal Foundation Models for Zero-shot Animal Species Recognition in Camera Trap Images2311.01064v1 · Zalan Fabian, Zhongqi Miao, Chunyuan Li et al.2023 · 10 citationsarXiv
STRIDE: Street View-based Environmental Feature Detection and Pedestrian Collision Prediction.39104779 · González, Cristina, Ayobi, Nicolás, Escallón, Felipe et al.2024 · 5 citations... IEEE International Conference on Computer Vision workshops. IEEE International Conference on Computer Vision. 2023;2023:3222-3234
PiGLET: Pixel-Level Grounding of Language Expressions With Transformers.37339036 · Gonzalez, Cristina, Ayobi, Nicolas, Hernandez, Isabela et al.2023 · 9 citationsIEEE transactions on pattern analysis and machine intelligence. 2023;45(10):12206-12221
SEPAL: Spatial Gene Expression Prediction from Local Graphs2309.01036v3 · Gabriel Mejia, Paula C'ardenas, Daniela Ruiz et al.2023 · 19 citationsarXiv
Guarding the Guardians: Automated Analysis of Online Child Sexual Abuse2308.03880v2 · Juanita Puentes, Angela Castillo, Wilmar Osejo et al.2023 · 5 citationsarXiv
EgoCOL: Egocentric Camera pose estimation for Open-world 3D object Localization @Ego4D challenge 20232306.16606v1 · Cristhian Forigua, Maria Escobar, Jordi Pont-Tuset et al.2023 · 0 citationsarXiv
3D Visualization, Skeletonization and Branching Analysis of Blood Vessels in Angiogenesis.37175421 · Ramakrishnan, Vignesh, Schönmehl, Rebecca, Artinger, Annalena et al.2023 · 13 citationsInternational journal of molecular sciences. 2023;24(9)
BoDiffusion: Diffusing Sparse Observations for Full-Body Human Motion Synthesis2304.11118v1 · Angela Castillo, Maria Escobar, Guillaume Jeanneret et al.2023 · 27 citationsarXiv
JoB-VS: Joint Brain-Vessel Segmentation in TOF-MRA Images2304.07744v1 · Natalia Valderrama, Ioannis Pitsiorlas, Luisa Vargas et al.2023 · 5 citationsarXiv
MATIS: Masked-Attention Transformers for Surgical Instrument Segmentation2303.09514v4 · Nicol'as Ayobi, Alejandra P'erez-Rond'on, Santiago Rodr'iguez et al.2023 · 34 citations2023 IEEE 20th International Symposium on Biomedical Imaging (ISBI), 10230819
Towards Holistic Surgical Scene Understanding2212.04582v4 · Natalia Valderrama, Paola Ruiz Puentes, Isabela Hern'andez et al.2022 · 58 citationsMedical Image Computing and Computer Assisted Intervention 2022,
QU-BraTS: MICCAI BraTS 2020 Challenge on Quantifying Uncertainty in Brain Tumor Segmentation - Analysis of Ranking Scores and Benchmarking Results.36998700 · Mehta, Raghav, Filos, Angelos, Baid, Ujjwal et al.2024 · 61 citationsThe journal of machine learning for biomedical imaging. 2022;2022
Video Swin Transformers for Egocentric Video Understanding @ Ego4D Challenges 20222207.11329v1 · Maria Escobar, Laura Daza, Cristina Gonz'alez et al.2022 · 1 citationarXiv
The Medical Segmentation Decathlon.35840566 · Antonelli, Michela, Reinke, Annika, Bakas, Spyridon et al.2022 · 1,372 citationsNature communications. 2022;13(1):4128
Rational Discovery of Antimicrobial Peptides by Means of Artificial Intelligence.35877911 · Ruiz Puentes, Paola, Henao, Maria C, Cifuentes, Javier et al.2022 · 52 citationsMembranes. 2022;12(7)
Predicting target-ligand interactions with graph convolutional networks for interpretable pharmaceutical discovery.35589824 · Ruiz Puentes, Paola, Rueda-Gensini, Laura, Valderrama, Natalia et al.2022 · 16 citationsScientific reports. 2022;12(1):8434
Smart pooling: AI-powered COVID-19 informative group testing.35444162 · Escobar, María, Jeanneret, Guillaume, Bravo-Sánchez, Laura et al.2022 · 19 citationsScientific reports. 2022;12(1):6519
Towards Assessing and Characterizing the Semantic Robustness of Face Recognition2202.04978v1 · Juan C. P'erez, Motasem Alfarra, Ali Thabet et al.2022 · 1 citationarXiv
Career total: 205 works. 96 are in this corpus.Showing the 50 most recent.
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