AF
Andrew P. French
cs.CVSoftwareplant biologycs.HCcs.LGAlgorithmsArabidopsis thalianabioinformaticsControlNetconvolutional neural networks
On Valency
published · living versionsW_ctyr365s·v1 · currentpublished
Identifying the Best Machine Learning Algorithms for Brain Tumor Segmentation, Progression Assessment, and Overall Survival Prediction in the BRATS Challenge
with Spyridon Bakas, Mauricio Reyes, Andras Jakab, Stefan Bauer +422
1 version
Preprints & journals
60 papers in the corpus · 2008–2026Memory-Supported Synergistic Adaptation for Training-Free Test-Time Medical Image Segmentation2607.17693v1 · Lingrui Li, Nan Pu, Dong Zhao et al.2026 · 0 citationsarXiv
Correction: Synthetic plant disease image generation to improve segmentation tasks in low-resource settings.42433890 · Cooper, Elliott, Hartley, Zane, French, Andrew2026 · 0 citationsFrontiers in plant science. 2026;17:1880531
Synthetic plant disease image generation to improve segmentation tasks in low-resource settings.42179483 · Cooper, Elliott, Hartley, Zane, French, Andrew2026 · 0 citationsFrontiers in plant science. 2026;17:1812323
Evaluation of one-image 3D reconstruction for plant model generation.41530767 · Gao, Zihe, Hartley, Zane K J, French, Andrew P2026 · 0 citationsPlant methods. 2026
Topological Structure Description for Artcode Detection Using the Shape of Orientation Histogram2508.10942v1 · Liming Xu, Dave Towey, Andrew P. French et al.2025 · 0 citationsarXiv
PlantDreamer: Achieving Realistic 3D Plant Models with Diffusion-Guided Gaussian Splatting2505.15528v1 · Zane K J Hartley, Lewis A G Stuart, Andrew P French et al.2025 · 2 citationsarXiv
MO-CTranS: A unified multi-organ segmentation model learning from multiple heterogeneously labelled datasets2503.22557v1 · Zhendi Gong, Susan Francis, Eleanor Cox et al.2025 · 0 citationsarXiv
An Attentive Representative Sample Selection Strategy Combined with Balanced Batch Training for Skin Lesion Segmentation2503.17034v1 · Stephen Lloyd-Brown, Susan Francis, Caroline Hoad et al.2025 · 2 citationsarXiv
Ethics of Generating Synthetic MRI Vocal Tract Views from the Face2407.08403v1 · Muhammad Suhaib Shahid, Gleb E. Yakubov, Andrew P. French2024 · 0 citationsarXiv
Uncovering the Metaverse within Everyday Environments: a Coarse-to-Fine Approach2404.17587v1 · Liming Xu, Dave Towey, Andrew P. French et al.2024 · 1 citationarXiv
Research in methodologies for modelling the oral cavity.38350128 · Shahid, Muhammad Suhaib, French, Andrew P, Valstar, Michel F et al.2024 · 0 citationsBiomedical physics & engineering express. 2024;10(3)
Connecting Everyday Objects with the Metaverse: A Unified Recognition Framework2309.06444v1 · Liming Xu, Dave Towey, Andrew P. French et al.2023 · 4 citationsarXiv
ConvTransSeg: A Multi-resolution Convolution-Transformer Network for Medical Image Segmentation2210.07072v1 · Zhendi Gong, Andrew P. French, Guoping Qiu et al.2022 · 6 citationsIn 2024 IEEE International Symposium on Biomedical Imaging (ISBI) (pp. 1-5). IEEE (2024)
Semantic Segmentation of Spontaneous Intracerebral Hemorrhage, Intraventricular Hemorrhage, and Associated Edema on CT Images Using Deep Learning.36523645 · Kok, Yong En, Pszczolkowski, Stefan, Law, Zhe Kang et al.2025 · 43 citationsRadiology. Artificial intelligence. 2022;4(6):e220096
Temporal refinement of 3D CNN semantic segmentations on 4D time-series of undersampled tomograms using hidden Markov models.34857791 · Bellos, Dimitrios, Basham, Mark, Pridmore, Tony et al.2022 · 3 citationsScientific reports. 2021;11(1):23279
Addressing Multiple Salient Object Detection via Dual-Space Long-Range Dependencies2111.03195v1 · Bowen Deng, Andrew P. French, Michael P. Pound2021 · 6 citationsarXiv
GANana: Unsupervised Domain Adaptation for Volumetric Regression of Fruit.34708214 · Hartley, Zane K J, Jackson, Aaron S, Pound, Michael et al.2026 · 17 citationsPlant phenomics (Washington, D.C.). 2021;2021:9874597
Using Metamorphic Relations to Verify and Enhance Artcode Classification2108.02694v1 · Liming Xu, Dave Towey, Andrew French et al.2021 · 13 citationsarXiv
Active Vision and Surface Reconstruction for 3D Plant Shoot Modelling.31027044 · Gibbs, Jonathon A, Pound, Michael P, French, Andrew P et al.2021 · 44 citationsIEEE/ACM transactions on computational biology and bioinformatics. 2020;17(6):1907-1917
Volumetric Segmentation of Cell Cycle Markers in Confocal Images Using Machine Learning and Deep Learning.32983190 · Khan, Faraz Ahmad, Voß, Ute, Pound, Michael P et al.2024 · 10 citationsFrontiers in plant science. 2020;11:1275
PhenomNet: Bridging Phenotype-Genotype Gap: A CNN-LSTM Based Automatic Plant Root Anatomization System.10.1101/2020.05.03.075184v2 · Yasrab, R., Pound, M., French, A. et al.2020 · 21 citationsbioRxiv
RootNet: A Convolutional Neural Networks for Complex Plant Root Phenotyping from High-Definition Datasets10.1101/2020.05.01.073270v2 · Yasrab, R., Pound, M., French, A. et al.2020 · 6 citationsbioRxiv
The effect of depth context in the segmentation of the colon in MRI volumes10.1101/2020.03.06.20027722v1 · Benson, E., Rier, L., Millican, I. et al.2020 · 1 citationmedRxiv
Deep convolutional neural networks for image-based Convolvulus sepium detection in sugar beet fields.32165909 · Gao, Junfeng, French, Andrew P, Pound, Michael P et al.2022 · 189 citationsPlant methods. 2020;16:29
Towards infield, live plant phenotyping using a reduced-parameter CNN.31894176 · Atanbori, John, French, Andrew P, Pridmore, Tony P2023 · 21 citationsMachine vision and applications. 2020;31(1):2
Convolutional Neural Net-Based Cassava Storage Root Counting Using Real and Synthetic Images.31850020 · Atanbori, John, Montoya-P, Maria Elker, Selvaraj, Michael Gomez et al.2023 · 19 citationsFrontiers in plant science. 2019;10:1516
A low-cost aeroponic phenotyping system for storage root development: unravelling the below-ground secrets of cassava (Manihot esculenta).31728153 · Selvaraj, Michael Gomez, Montoya-P, Maria Elker, Atanbori, John et al.2022 · 38 citationsPlant methods. 2019;15:131
RootNav 2.0: Deep learning for automatic navigation of complex plant root architectures.31702012 · Yasrab, Robail, Atkinson, Jonathan A, Wells, Darren M et al.2020 · 168 citationsGigaScience. 2019;8(11)
Volumetric Segmentation of Cell Cycle Markers in Confocal Images10.1101/707257v1 · Khan, F. A., Voss, U., Pound, M. P. et al.2019 · 2 citationsbioRxiv
A convolutional neural network for fast upsampling of undersampled tomograms in X-ray CT time-series using a representative highly sampled tomogram.31074449 · Bellos, Dimitrios, Basham, Mark, Pridmore, Tony et al.2024 · 9 citationsJournal of synchrotron radiation. 2019;26(Pt 3):839-853
Root branching toward water involves posttranslational modification of transcription factor ARF7.30573626 · Orosa-Puente, Beatriz, Leftley, Nicola, von Wangenheim, Daniel et al.2019 · 285 citationsScience (New York, N.Y.). 2018;362(6421):1407-1410
Identifying the Best Machine Learning Algorithms for Brain Tumor Segmentation, Progression Assessment, and Overall Survival Prediction in the BRATS Challenge1811.02629v3 · Spyridon Bakas, Mauricio Reyes, Andras Jakab et al.2018 · 1,441 citationsarXivon Valency
Plant Phenotyping: An Active Vision Cell for Three-Dimensional Plant Shoot Reconstruction.30097468 · Gibbs, Jonathon A, Pound, Michael, French, Andrew P et al.2019 · 61 citationsPlant physiology. 2018;178(2):524-534
Erratum to: Deep machine learning provides state-of-the-art performance in image-based plant phenotyping.30053289 · Pound, Michael P, Atkinson, Jonathan A, Townsend, Alexandra J et al.2025 · 11 citationsGigaScience. 2018;7(7)
Cellular Patterning of Arabidopsis Roots Under Low Phosphate Conditions.29922313 · Janes, George, von Wangenheim, Daniel, Cowling, Sophie et al.2020 · 28 citationsFrontiers in plant science. 2018;9:735
Deep Learning for Multi-task Plant Phenotyping10.1101/204552v1 · Pound, M. P., Atkinson, J. A., Wells, D. M. et al.2017 · 184 citationsbioRxiv
Hyperspectral image analysis techniques for the detection and classification of the early onset of plant disease and stress.29051772 · Lowe, Amy, Harrison, Nicola, French, Andrew P2024 · 657 citationsPlant methods. 2017;13:80
Deep machine learning provides state-of-the-art performance in image-based plant phenotyping.29020747 · Pound, Michael P, Atkinson, Jonathan A, Townsend, Alexandra J et al.2018 · 392 citationsGigaScience. 2017;6(10):1-10
Volume Segmentation and Analysis of Biological Materials Using SuRVoS (Super-region Volume Segmentation) Workbench.28872144 · Darrow, Michele C, Luengo, Imanol, Basham, Mark et al.2018 · 8 citationsJournal of visualized experiments : JoVE. 2017(126)
AutoRoot: open-source software employing a novel image analysis approach to support fully-automated plant phenotyping.28286542 · Pound, Michael P, Fozard, Susan, Torres Torres, Mercedes et al.2020 · 14 citationsPlant methods. 2017;13:12
The Microphenotron: a robotic miniaturized plant phenotyping platform with diverse applications in chemical biology.28265297 · Burrell, Thomas, Fozard, Susan, Holroyd, Geoff H et al.2024 · 32 citationsPlant methods. 2017;13:10
SuRVoS: Super-Region Volume Segmentation workbench.28246039 · Luengo, Imanol, Darrow, Michele C, Spink, Matthew C et al.2017 · 89 citationsJournal of structural biology. 2017;198(1):43-53
Hierarchical Piecewise-Constant Super-regions1605.05937v1 · Imanol Luengo, Mark Basham, Andrew P. French2016 · 4 citationsarXiv
Approaches to three-dimensional reconstruction of plant shoot topology and geometry.32480547 · Gibbs, Jonathon A, Pound, Michael, French, Andrew P et al.2025 · 103 citationsFunctional plant biology : FPB. 2016;44(1):62-75
From image processing to computer vision: plant imaging grows up.32480688 · Dee, Hannah, French, Andrew2020 · 10 citationsFunctional plant biology : FPB. 2015;42(5):iii-v
Quantification of fluorescent reporters in plant cells.25408449 · Pound, Michael, French, Andrew P, Wells, Darren M2015 · 0 citationsMethods in molecular biology (Clifton, N.J.). 2015;1242:123-31
Automated recovery of three-dimensional models of plant shoots from multiple color images.25332504 · Pound, Michael P, French, Andrew P, Murchie, Erik H et al.2016 · 136 citationsPlant physiology. 2014;166(4):1688-98
Mechanical modelling quantifies the functional importance of outer tissue layers during root elongation and bending.24641449 · Dyson, Rosemary J, Vizcay-Barrena, Gema, Band, Leah R et al.2015 · 64 citationsThe New phytologist. 2014;202(4):1212-1222
Systems analysis of auxin transport in the Arabidopsis root apex.24632533 · Band, Leah R, Wells, Darren M, Fozard, John A et al.2015 · 210 citationsThe Plant cell. 2014;26(3):862-75
Time-profiling fluorescent reporters in the Arabidopsis root.24306858 · Larrieu, Antoine P, French, Andrew P, Pridmore, Tony P et al.2014 · 6 citationsMethods in molecular biology (Clifton, N.J.). 2014;1056:11-7
Career total: 152 works. 60 are in this corpus.Showing the 50 most recent.
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