GZ
Guojie Zhang
GenomeEvolution, MolecularBiological EvolutionGenomicsevolutionary biologygenomicsAntsPhylogenyancient DNAevolution
On Valency
published · living versionsW_26xzgw86·v1 · currentpublished
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
with Keith R. Bradnam, Joseph N. Fass, Anton Alexandrov, Paul Baranay +86
1 version
Preprints & journals
308 papers in the corpus · 2000–2026Transposable elements as evolutionary catalysts of ant macrodiversity.42777033 · Schrader, Lukas, Rinke, Janina L, Errbii, Mohammed et al.2026 · 0 citationsScience advances. 2026;12(39):eaee0306
Genomic predisposition is associated with the direction of sex chromosome evolution.42658954 · Zhou, Yang, Jin, Jiazheng, Jiang, Chuan et al.2026 · 0 citationsScience (New York, N.Y.). 2026;393(6814):eaec3449
Flight style and metabolism shape the tempo of genome evolution in birds.42447157 · Ji, Yanzhu, Wu, Lei, Li, Dongming et al.2026 · 0 citationsPLoS biology. 2026;24(7):e3003884
Placental invasion mismatch underlines pregnancy disorders and cancers.42555454 · Li, Xin, Chen, Ruixue, Zhang, Yangyi et al.2026 · 0 citationsbioRxiv : the preprint server for biology. 2026
The Vertebrate Genomes Project Phase I: A global reference genome resource.42395566 · Formenti, Giulio, Absolon, Dominic E, Abueg, Linelle Ann L et al.2026 · 10 citationsbioRxiv : the preprint server for biology. 2026
Founder effects drive high mitochondrial dN/dS in island rails.42089461 · Wanders, Kees, Oğuzhan, Zeynep, Stervander, Martin et al.2026 · 0 citationsEvolution; international journal of organic evolution. 2026;80(6):1343-1356
A near telomere-to-telomere genome assembly of the Amur stickleback ( Pungitius sinensis) reveals structural variation and parallel evolution of sticklebacks.42339727 · Chen, Bao-Hua, Wu, Dong-Ya, Yu, Dan et al.2026 · 0 citationsZoological research. 2026;47(3):880-894
A long-read human pangenome initiative for comprehensive interpretation of nuclear-embedded mitochondrial DNA.42140905 · Fu, Lianting, Chen, Jieyi, Lian, Da et al.2026 · 0 citationsNature communications. 2026;17(1)
Haplotype-resolved methylation profiling across three generations reveals principles of human epigenetic inheritance.41905586 · Zhou, Hongling, Mu, Weixue, Xu, Jinjin et al.2026 · 0 citationsJournal of genetics and genomics = Yi chuan xue bao. 2026;53(8):1437-1450
Gut microbiome community structure correlates with different behavioral phenotypes in the Belyaev Farm-Fox Experiment.41896639 · Puetz, Lara C, O Delmont, Tom, Mitchell, Alex L et al.2026 · 2 citationsCommunications biology. 2026;9(1)
High-throughput phenomics of global ant biodiversity.41787133 · Katzke, Julian, Hita Garcia, Francisco, Lösel, Philipp D et al.2026 · 6 citationsNature methods. 2026;23(3):663-672
Introgressed mitochondrial fragments from archaic hominins alter nuclear genome function in modern humans.41637520 · Zhu, Qiong, Zhang, Jinning, Zhou, Weichen et al.2026 · 1 citationScience advances. 2026;12(6):eaea0706
Structural genomics sheds light on protein functions and remote homologs across the insect tree of life.41606168 · Wu, Weiyin, Cui, Chunlai, Zhu, Yixiao et al.2026 · 6 citationsCell research. 2026;36(6):411-425
Comparative analysis of 163 ant genomes reveals recurrent horizontal gene transfer from bacteria to ants.41947428 · Rinke, Janina L, Franke, Lukas, He, Ding et al.2026 · 2 citationsGigaScience. 2026;15
Draft assemblies for 177 bird species enhance genus-level coverage.42104960 · Chen, Guangji, Wang, Shuang, Bilyeli Øksnebjerg, Daniel et al.2026 · 0 citationsGigaScience. 2026;15
A comprehensive reference genome assembly dataset of birds inhabiting Denmark, Greenland, and the Faroe Islands.42411836 · Øksnebjerg, Daniel Bilyeli, Nielsen, Sascha Dreyer, Chen, Guangji et al.2026 · 1 citationGigaScience. 2026;15
Joint Segmental Duplication Co-option Drives Human-specific Transcriptional Readthrough and Expression Fine-tuning of NPEPPS-TBC1D310.64898/2026.01.14.699191v1 · Ma, K., Yang, Z., Li, Z. et al.2026 · 0 citationsbioRxiv
lncRNAs contribute to caste differentiation as a regulatory layer in ants10.64898/2026.01.08.698392v1 · Ding, G., Lin, F., Zheng, J. et al.2026 · 0 citationsbioRxiv
The genetics, evolution, and maintenance of a biological rock-paper-scissors game.41477897 · Corl, Ammon, Guzman, Alex, Bi, Ke et al.2026 · 9 citationsScience (New York, N.Y.). 2026;391(6780):69-74
Tibetan near-complete pangenome reveals complex variants underlying high-altitude adaptation10.64898/2025.12.16.694547v1 · He, Y., Liu, K., Mao, L. et al.2025 · 0 citationsbioRxiv
Incomplete lineage sorting of segmental duplications defines the human chromosome 2 fusion site early during African great ape speciation.41338219 · Yang, Zikun, Zhang, Lu, Jiang, Xinrui et al.2026 · 6 citationsCell genomics. 2026;6(1):101079
Phenotypic signatures of incomplete lineage sorting in hominids.41266166 · Blom, Stine Keibel, Hipsley, Christy Anna, Zhang, Guojie2026 · 3 citationsTrends in ecology & evolution. 2026;41(1):78-90
A genomic compendium of hundreds of teleost fishes reveals their evolutionary landscape.41789145 · Song, Yue, Yuan, Zengbao, Fang, Chengchi et al.2026 · 2 citationsInnovation (Cambridge (Mass.)). 2026;7(3):101177
Genomic architecture of ant social evolution.40640976 · Liu, Weiwei, Ding, Guo, Xiong, Zijun et al.2025 · 0 citationsZoological research. 2025;46(4):789-791
Origins and diversity of Greenland's Qimmit revealed with genomes of ancient and modern sled dogs.40638731 · Feuerborn, T R, Appelt, M, Bougiouri, K et al.2025 · 7 citationsScience (New York, N.Y.). 2025;389(6756):163-168
The role of dopaminergic neuronal clusters in governing division of labor in ants.40574595 · Zhong, Wenjiang, Xie, Nianxia, Ding, Guo et al.2026 · 2 citationsInsect science. 2026;33(5):2081-2096
Adaptive radiation and social evolution of the ants.40527318 · Vizueta, Joel, Xiong, Zijun, Ding, Guo et al.2025 · 51 citationsCell. 2025;188(18):4828-4848.e25
AMHY and sex determination in egg-laying mammals.40426235 · Shearwin-Whyatt, Linda, Fenelon, Jane, Yu, Hongshi et al.2025 · 2 citationsGenome biology. 2025;26(1):144
Genomes of critically endangered saola are shaped by population structure and purging.40328258 · Garcia-Erill, Genís, Liu, Shanlin, Le, Minh Duc et al.2025 · 10 citationsCell. 2025;188(12):3102-3116.e22
Drivers of avian genomic change revealed by evolutionary rate decomposition.40108459 · Duchêne, David A, Chowdhury, Al-Aabid, Yang, Jingyi et al.2025 · 14 citationsNature. 2025;641(8065):1208-1216
The amphipod genome reveals population dynamics and adaptations to hadal environment.40054448 · Zhang, Haibin, Sun, Shuai, Liu, Jun et al.2025 · 14 citationsCell. 2025;188(5):1378-1392.e18
Sedimentary DNA insights into Holocene Adélie penguin (Pygoscelis adeliae) populations and ecology in the Ross Sea, Antarctica.40044673 · Wood, Jamie R, Zhou, Chengran, Cole, Theresa L et al.2025 · 7 citationsNature communications. 2025;16(1):1798
Rapid Evolution in Action: Environmental Filtering Supports Coral Adaptation to a Hot, Acidic, and Deoxygenated Extreme Habitat.40028829 · Leiva, Carlos, Torda, Gergely, Zhou, Chengran et al.2025 · 6 citationsGlobal change biology. 2025;31(3):e70103
Genomic and phenotypic evidence support visual and olfactory shifts in primate evolution.40021902 · Chi, Hai, Wan, Jiahui, Melin, Amanda D et al.2025 · 17 citationsNature ecology & evolution. 2025;9(4):721-733
Chromosome-level echidna genome illuminates evolution of multiple sex chromosome system in monotremes.39778707 · Zhou, Yang, Jin, Jiazheng, Li, Xuemei et al.2025 · 13 citationsGigaScience. 2025;14
GFFx: A Rust-based suite of utilities for ultra-fast genomic feature extraction.41129325 · Chen, Baohua, Wu, Dongya, Zhang, Guojie2025 · 3 citationsGigaScience. 2025;14
Why should we stop translating "evolution" to "" and turn to use "" in Chinese.39791295 · Sun, Zhong-Yi, Zhang, Guo-Jie2025 · 0 citationsYi chuan = Hereditas. 2025;47(1):5-17
Ecological and anthropogenic effects on the genomic diversity of lemurs in Madagascar.39730835 · Orkin, Joseph D, Kuderna, Lukas F K, Hermosilla-Albala, Núria et al.2025 · 12 citationsNature ecology & evolution. 2025;9(1):42-56
The genomic origin of early maize in eastern North America.39637852 · Ramos-Madrigal, Jazmín, Fritz, Gayle J, Schroeder, Bryon et al.2025 · 6 citationsCell. 2025;188(1):33-43.e16
From Egg to Adult: A Developmental Table of the Ant Monomorium pharaonis.39584621 · Rajakumar, Arjuna, Pontieri, Luigi, Li, Ruyan et al.2024 · 27 citationsJournal of experimental zoology. Part B, Molecular and developmental evolution. 2024;342(8):557-585
Juvenile hormone as a key regulator for asymmetric caste differentiation in ants.39495909 · Li, Ruyan, Dai, Xueqin, Zheng, Jixuan et al.2024 · 29 citationsProceedings of the National Academy of Sciences of the United States of America. 2024;121(46):e2406999121
GCI: a continuity inspector for complete genome assembly.39432569 · Chen, Quanyu, Yang, Chentao, Zhang, Guojie et al.2024 · 28 citationsBioinformatics (Oxford, England). 2024;40(11)
Comparative genomics identifies key adaptive traits of sponge-associated microbial symbionts.39228053 · O'Brien, Paul A, Robbins, Steven J, Tan, Shangjin et al.2024 · 6 citationsEnvironmental microbiology. 2024;26(9):e16690
An evolutionarily conserved pathway mediated by neuroparsin-A regulates reproductive plasticity in ants.39133741 · Zhang, Xiafang, Xie, Nianxia, Ding, Guo et al.2024 · 12 citationsPLoS biology. 2024;22(8):e3002763
Evolutionary trajectory of TRPM2 channel activation by adenosine diphosphate ribose and calcium.38734586 · Ma, Cheng, Luo, Yanping, Zhang, Congyi et al.2024 · 3 citationsScience bulletin. 2024;69(18):2892-2905
Adaptive expansion of ERVK solo-LTRs is associated with Passeriformes speciation events.38605055 · Chen, Guangji, Yu, Dan, Yang, Yu et al.2024 · 15 citationsNature communications. 2024;15(1):3151
Comparative genomics of macaques and integrated insights into genetic variation and population history.38645259 · Zhang, Shilong, Xu, Ning, Fu, Lianting et al.2025 · 48 citationsbioRxiv : the preprint server for biology. 2024
ETV2 induces endothelial, but not hematopoietic, lineage specification in birds.38570190 · Weng, Wei, Deng, Yuan, Deviatiiarov, Ruslan et al.2024 · 1 citationLife science alliance. 2024;7(6)
A region of suppressed recombination misleads neoavian phylogenomics.38557186 · Mirarab, Siavash, Rivas-González, Iker, Feng, Shaohong et al.2024 · 37 citationsProceedings of the National Academy of Sciences of the United States of America. 2024;121(15):e2319506121
Complexity of avian evolution revealed by family-level genomes.38560995 · Stiller, Josefin, Feng, Shaohong, Chowdhury, Al-Aabid et al.2024 · 299 citationsNature. 2024;629(8013):851-860
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