JB
James Brown
cs.CVDNA DamageRadiation-Sensitizing AgentsRadiation ToleranceCell HypoxiaDNA RepairDeep LearningChromosome AberrationsRadiation EffectsAlgorithms
On Valency
published · living versionsW_ctyr365s·v1 · currentpublished
Identifying the Best Machine Learning Algorithms for Brain Tumor Segmentation, Progression Assessment, and Overall Survival Prediction in the BRATS Challenge
with Spyridon Bakas, Mauricio Reyes, Andras Jakab, Stefan Bauer +422
1 version
Preprints & journals
381 papers in the corpus · 1968–2026CD248/Endosialin Regulates Synovial Fibroblast State to Control Coupling of Inflammation and Bone Damage in Murine Models of Immune-Mediated Inflammatory Arthritis and Aging.42703758 · Kemble, Samuel, Wehmeyer, Corinna, Brown, James M et al.2026 · 1 citationArthritis & rheumatology (Hoboken, N.J.). 2026
Same Branches, Different Trees: A Bifurcation Connectedness Metric for Coronary Artery Segmentation and FFR-CT Decision Agreement2607.28327v1 · Maame Owusu-Ansah, Kelvin Lee, Dr Vinod Venugopal et al.2026 · 0 citationsarXiv
RoLID-11K: A Dashcam Dataset for Small-Object Roadside Litter Detection2601.00398v1 · Tao Wu, Qing Xu, Xiangjian He et al.2026 · 0 citationsarXiv
Hierarchical Deep Learning for Abnormality Classification in Mouse Skeleton Using Multiview X-Ray Images: Convolutional Autoencoders Versus ConvNeXt.41150024 · Jawaid, Muhammad M, Bains, Rasneer S, Wells, Sara et al.2025 · 1 citationJournal of imaging. 2025;11(10)
Getting the Numbers Right$\unicode{x2014}$Modelling Multi-Class Object Counting in Dense and Varied Scenes2510.02213v2 · Villanelle O'Reilly, Jonathan Cox, Georgios Leontidis et al.2025 · 0 citationsarXiv
Habitat Classification from Ground-Level Imagery Using Deep Neural Networks2507.04017v3 · Hongrui Shi, Lisa Norton, Lucy Ridding et al.2025 · 2 citationsarXiv
Deep histological synthesis from mass spectrometry imaging for multimodal registration2506.05441v1 · Kimberley M. Bird, Xujiong Ye, Alan M. Race et al.2025 · 1 citationarXiv
Unsupervised Tomato Split Anomaly Detection using Hyperspectral Imaging and Variational Autoencoders2501.02921v2 · Mahmoud Abdulsalam, Usman Zahidi, Bradley Hurst et al.2025 · 6 citationsarXiv
Non-calcified plaque-based coronary stenosis grading in contrast enhanced CT.38906576 · Jawaid, Muhammad Moazzam, Narejo, Sanam, Riaz, Farhan et al.2024 · 0 citationsMedical engineering & physics. 2024;129:104182
Pushing the limits of cell segmentation models for imaging mass cytometry2402.04446v1 · Kimberley M. Bird, Xujiong Ye, Alan M. Race et al.2024 · 1 citationarXiv
Dual-Stream Spatiotemporal Networks with Feature Sharing for Monitoring Animals in the Home Cage.38067907 · Nwokedi, Ezechukwu Israel, Bains, Rasneer Sonia, Bidaut, Luc et al.2023 · 5 citationsSensors (Basel, Switzerland). 2023;23(23)
Stroke-Related Visceral Alterations: A Voxel-Based Neuroanatomic Localization Study.37642641 · Arsava, Ethem Murat, Chang, Ken, Tawakol, Ahmed et al.2023 · 3 citationsAnnals of neurology. 2023;94(6):1155-1163
Bavituximab Decreases Immunosuppressive Myeloid-Derived Suppressor Cells in Newly Diagnosed Glioblastoma Patients.37327319 · Ly, K Ina, Richardson, Leland G, Liu, Mofei et al.2026 · 22 citationsClinical cancer research : an official journal of the American Association for Cancer Research. 2023;29(16):3017-3025
Association of Biomarker-Based Artificial Intelligence With Risk of Racial Bias in Retinal Images.37140902 · Coyner, Aaron S, Singh, Praveer, Brown, James M et al.2023 · 23 citationsJAMA ophthalmology. 2023;141(6):543-552
Correction: Macrophage Exclusion after Radiation Therapy (MERT): A First-in-Human Phase I/II Trial using a CXCR4 Inhibitor in Glioblastoma.36647675 · Thomas, Reena P, Nagpal, Seema, Iv, Michael et al.2023 · 1 citationClinical cancer research : an official journal of the American Association for Cancer Research. 2023;29(2):502
DeepVerge: Classification of Roadside Verge Biodiversity and Conservation Potential2206.04271v1 · Andrew Perrett, Charlie Barnes, Mark Schofield et al.2022 · 4 citationsarXiv
Federated Learning for Multicenter Collaboration in Ophthalmology: Implications for Clinical Diagnosis and Disease Epidemiology.35304305 · Hanif, Adam, Lu, Charles, Chang, Ken et al.2022 · 36 citationsOphthalmology. Retina. 2022;6(8):650-656
Federated Learning for Multicenter Collaboration in Ophthalmology: Improving Classification Performance in Retinopathy of Prematurity.35296449 · Lu, Charles, Hanif, Adam, Singh, Praveer et al.2022 · 43 citationsOphthalmology. Retina. 2022;6(8):657-663
Reflections of the Senior Editors for Biology.34793735 · Brown, J Martin, Freeman, Michael L, Marples, Brian et al.2022 · 0 citationsInternational journal of radiation oncology, biology, physics. 2021;111(5):1118-1119
Not Color Blind: AI Predicts Racial Identity from Black and White Retinal Vessel Segmentations2109.13845v1 · Aaron S. Coyner, Praveer Singh, James M. Brown et al.2021 · 4 citationsarXiv
Unsupervised detection of mouse behavioural anomalies using two-stream convolutional autoencoders2106.00598v1 · Ezechukwu I Nwokedi, Rasneer S Bains, Luc Bidaut et al.2021 · 1 citationarXiv
In Reply to Song et al, and In Reply to Brown and Carlson.33864825 · Grimm, Jimm, Mahadevan, Anand, Brown, J Martin et al.2021 · 5 citationsInternational journal of radiation oncology, biology, physics. 2021;110(1):253-254
LAMA: automated image analysis for the developmental phenotyping of mouse embryos.33574040 · Horner, Neil R, Venkataraman, Shanmugasundaram, Armit, Chris et al.2021 · 20 citationsDevelopment (Cambridge, England). 2021;148(18)
In Regard to Nam et al.33610292 · Brown, J Martin2021 · 1 citationInternational journal of radiation oncology, biology, physics. 2021;109(4):1124
Applications of Artificial Intelligence for Retinopathy of Prematurity Screening.33637645 · Campbell, J Peter, Singh, Praveer, Redd, Travis K et al.2021 · 99 citationsPediatrics. 2021;147(3)
Cell Killing and Chromosome Aberrations by Ionizing Radiations: Brother, Can You Paradigm?33308706 · Bedford, Joel S, Brown, J Martin2021 · 4 citationsInternational journal of radiation oncology, biology, physics. 2021;109(1):73-75
Radiomics Repeatability Pitfalls in a Scan-Rescan MRI Study of Glioblastoma.33842889 · Hoebel, Katharina V, Patel, Jay B, Beers, Andrew L et al.2024 · 54 citationsRadiology. Artificial intelligence. 2021;3(1):e190199
In Regard to Song et al.33243481 · Brown, J Martin, Carlson, David J2021 · 3 citationsInternational journal of radiation oncology, biology, physics. 2021;110(1):251-252
Evaluation of a Deep Learning-Derived Quantitative Retinopathy of Prematurity Severity Scale.33121959 · Campbell, J Peter, Kim, Sang Jin, Brown, James M et al.2021 · 73 citationsOphthalmology. 2021;128(7):1070-1076
DeepNeuro: an open-source deep learning toolbox for neuroimaging.32578020 · Beers, Andrew, Brown, James, Chang, Ken et al.2021 · 45 citationsNeuroinformatics. 2021;19(1):127-140
Radiation Damage to Tumor Vasculature Initiates a Program That Promotes Tumor Recurrences.32473180 · Brown, J Martin2021 · 44 citationsInternational journal of radiation oncology, biology, physics. 2020;108(3):734-744
Variability in Plus Disease Identified Using a Deep Learning-Based Retinopathy of Prematurity Severity Scale.32380115 · Choi, Rene Y, Brown, James M, Kalpathy-Cramer, Jayashree et al.2021 · 22 citationsOphthalmology. Retina. 2020;4(10):1016-1021
Evaluation of artificial intelligence-based telemedicine screening for retinopathy of prematurity.32289490 · Greenwald, Miles F, Danford, Ian D, Shahrawat, Malika et al.2021 · 49 citationsJournal of AAPOS : the official publication of the American Association for Pediatric Ophthalmology and Strabismus. 2020;24(3):160-162
Siamese neural networks for continuous disease severity evaluation and change detection in medical imaging.32258430 · Li, Matthew D, Chang, Ken, Bearce, Ben et al.2023 · 143 citationsNPJ digital medicine. 2020;3:48
Plus Disease in Retinopathy of Prematurity: Convolutional Neural Network Performance Using a Combined Neural Network and Feature Extraction Approach.32704416 · Yildiz, Veysi M, Tian, Peng, Yildiz, Ilkay et al.2021 · 62 citationsTranslational vision science & technology. 2020;9(2):10
Aggressive Posterior Retinopathy of Prematurity: Clinical and Quantitative Imaging Features in a Large North American Cohort.32197913 · Bellsmith, Kellyn N, Brown, James, Kim, Sang Jin et al.2020 · 42 citationsOphthalmology. 2020;127(8):1105-1112
Macrophage exclusion after radiation therapy (MERT): A new and effective way to increase the therapeutic ratio of radiotherapy.31812931 · Brown, J Martin, Thomas, Reena, Nagpal, Seema et al.2021 · 30 citationsRadiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology. 2020;144:159-164
Automatic assessment of glioma burden: a deep learning algorithm for fully automated volumetric and bidimensional measurement.31190077 · Chang, Ken, Beers, Andrew L, Bai, Harrison X et al.2020 · 180 citationsNeuro-oncology. 2019;21(11):1412-1422
Macrophage Exclusion after Radiation Therapy (MERT): A First in Human Phase I/II Trial using a CXCR4 Inhibitor in Glioblastoma.31537527 · Thomas, Reena P, Nagpal, Seema, Iv, Michael et al.2020 · 105 citationsClinical cancer research : an official journal of the American Association for Cancer Research. 2019;25(23):6948-6957
A Quantitative Severity Scale for Retinopathy of Prematurity Using Deep Learning to Monitor Disease Regression After Treatment.31268499 · Gupta, Kishan, Campbell, J Peter, Taylor, Stanford et al.2023 · 84 citationsJAMA ophthalmology. 2019;137(9):1029-1036
Monitoring Disease Progression With a Quantitative Severity Scale for Retinopathy of Prematurity Using Deep Learning.31268518 · Taylor, Stanford, Brown, James M, Gupta, Kishan et al.2023 · 121 citationsJAMA ophthalmology. 2019;137(9):1022-1028
Machine Learning Models can Detect Aneurysm Rupture and Identify Clinical Features Associated with Rupture.31295616 · Silva, Michael A, Patel, Jay, Kavouridis, Vasileios et al.2020 · 69 citationsWorld neurosurgery. 2019;131:e46-e51
Classification and comparison via neural networks.31254769 · Yıldız, İlkay, Tian, Peng, Dy, Jennifer et al.2019 · 25 citationsNeural networks : the official journal of the International Neural Network Society. 2019;118:65-80
Dynamin 2, cell trafficking, and the triple-negative paradox.31040924 · Chernikova, Sophia B, Game, John C, Brown, J Martin2020 · 1 citationOncotarget. 2019;10(24):2336-2337
Targeting the Post-Irradiation Tumor Microenvironment in Glioblastoma via Inhibition of CXCL12.30813533 · Giordano, Frank A, Link, Barbara, Glas, Martin et al.2020 · 25 citationsCancers. 2019;11(3)
Automated Fundus Image Quality Assessment in Retinopathy of Prematurity Using Deep Convolutional Neural Networks.31044738 · Coyner, Aaron S, Swan, Ryan, Campbell, J Peter et al.2020 · 70 citationsOphthalmology. Retina. 2019;3(5):444-450
CaRENets: Compact and Resource-Efficient CNN for Homomorphic Inference on Encrypted Medical Images1901.10074v1 · Jin Chao, Ahmad Al Badawi, Balagopal Unnikrishnan et al.2019 · 15 citationsarXiv
Semi-Supervised Deep Learning for Abnormality Classification in Retinal Images1812.07832v1 · Bruno Lecouat, Ken Chang, Chuan-Sheng Foo et al.2018 · 33 citationsarXiv
Beware of Clinical Trials of DNA Repair Inhibitors.30529372 · Brown, J Martin2019 · 19 citationsInternational journal of radiation oncology, biology, physics. 2019;103(5):1182-1183
Deep Learning for Image Quality Assessment of Fundus Images in Retinopathy of Prematurity.30815164 · Coyner, Aaron S, Swan, Ryan, Brown, James M et al.2019 · 28 citationsAMIA ... Annual Symposium proceedings. AMIA Symposium. 2018;2018:1224-1232
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