BP
Bartlomiej W. Papiez
cs.CVeess.IVcs.AIcs.LGAlgorithmsImage Processing, Computer-AssistedSubtraction TechniqueArtificial Intelligencecs.CLdeep learning
On Valency
published · living versionsW_ursjnzxq·v1 · currentpublished
Deep Auxiliary Learning via Bilevel Feature Optimization for Label-Efficient Medical Image Segmentation
with Fuping Wu, Xi Jia, Le Zhang, Jiahua Li +2
1 version
Preprints & journals
65 papers in the corpus · 2013–2026Deep Auxiliary Learning via Bilevel Feature Optimization for Label-Efficient Medical Image Segmentation2610.26954v1 · Fuping Wu, Xi Jia, Le Zhang et al.2026 · 0 citationsarXivon Valency
Beyond the Encoder: Object-Centric Representations Emerging from Segmentation Foundation Models2610.18543v1 · Michalis Pistos, Bart\lomiej W. Papież2026 · 0 citationsarXiv
When Two Tracers Disagree: An Investigation of Multimodal Fusion for Clinical PET/CT Segmentation2608.19063v1 · Jack A. Johnson, Bart\lomiej W. Papież2026 · 0 citationsarXiv
Evaluation of Clinically Steerable Retinal Image Generation from Foundation Model Latent Spaces2608.13455v1 · Zuzanna A. Wakefield-Sk'orniewska, Bart\lomiej W. Papież2026 · 0 citationsarXiv
Artificial intelligence in the diagnosis and assessment of damage in peripheral inflammatory arthritis: a scoping review.42591911 · Antony, Anna, Henley-Marshall, Dylan, Mon, Yi et al.2026 · 0 citationsTherapeutic advances in musculoskeletal disease. 2026;18:1759720X261460122
PET/CT Radiogenomic Mutation Prediction in Non-Small Cell Lung Cancer Using Multi-Label Learning2608.09721v1 · Mona Furukawa, Sai Hyne, Daniel R. McGowan et al.2026 · 0 citationsarXiv
WBCBench 2026: A Challenge for Robust White Blood Cell Classification Under Class Imbalance2604.10797v1 · Xin Tian, Xudong Ma, Tianqi Yang et al.2026 · 7 citationsarXiv
AutoPET Challenge on Fully Automated Lesion Segmentation in Oncologic PET/CT Imaging, Part 2: Domain Generalization.41469162 · Dexl, Jakob, Gatidis, Sergios, Früh, Marcel et al.2026 · 14 citationsJournal of nuclear medicine : official publication, Society of Nuclear Medicine. 2026;67(3):481-488
Deformation-Recovery diffusion model (DRDM): Instance deformation for image manipulation and synthesis.41702179 · Zheng, Jian-Qing, Mo, Yuanhan, Sun, Yang et al.2026 · 4 citationsMedical image analysis. 2026;110:103987
Public perceptions of health data sharing for artificial intelligence research: a qualitative focus group study in the UK.42712357 · Kuo, Rachel, O'Hanlon, Ciarán, Smith, Judi et al.2026 · 1 citationBMJ digital health & AI. 2026;2(1):e000239
When does Subgroup Balance Matter? Predicting Performance Sensitivity from Latent Separability2512.09496v2 · Anissa Alloula, Charles Jones, Zuzanna Wakefield-Skorniewska et al.2025 · 0 citationsarXiv
Emerging Semantic Segmentation from Positive and Negative Coarse Label Learning2508.18186v2 · Le Zhang, Fuping Wu, Arun Thirunavukarasu et al.2025 · 0 citationsarXiv
Exploring the Effectiveness of Deep Features from Domain-Specific Foundation Models in Retinal Image Synthesis2506.11753v1 · Zuzanna Skorniewska, Bartlomiej W. Papiez2025 · 0 citationsarXiv
Subgroups Matter for Robust Bias Mitigation2505.21363v3 · Anissa Alloula, Charles Jones, Ben Glocker et al.2025 · 0 citationsarXiv
DiffuSeg: Domain-Driven Diffusion for Medical Image Segmentation.40030962 · Zhang, Le, Wu, Fuping, Bronik, Kevin et al.2025 · 15 citationsIEEE journal of biomedical and health informatics. 2025;29(5):3619-3631
MT-CooL: Multi-Task Cooperative Learning via Flat Minima Searching.40030504 · Wu, Fuping, Zhang, Le, Sun, Yang et al.2025 · 2 citationsIEEE transactions on medical imaging. 2025;44(4):1648-1658
Rethinking Foundation Models for Medical Image Classification through a Benchmark Study on MedMNIST2501.14685v1 · Fuping Wu, Bartlomiej W. Papiez2025 · 1 citationarXiv
KneeXNeT: An Ensemble-Based Approach for Knee Radiographic Evaluation2412.07526v1 · Nicharee Srikijkasemwat, Soumya Snigdha Kundu, Fuping Wu et al.2024 · 4 citationsarXiv
SpineFM: Leveraging Foundation Models for Automatic Spine X-ray Segmentation2411.00326v2 · Samuel J. Simons, Bart\lomiej W. Papież2024 · 6 citationsarXiv
Fool Me Once? Contrasting Textual and Visual Explanations in a Clinical Decision-Support Setting2410.12284v2 · Maxime Kayser, Bayar Menzat, Cornelius Emde et al.2024 · 13 citationsarXiv
Deep Neural Networks for Predicting Recurrence and Survival in Patients with Esophageal Cancer After Surgery2409.00163v1 · Yuhan Zheng, Jessie A Elliott, John V Reynolds et al.2024 · 1 citationarXiv
On Biases in a UK Biobank-based Retinal Image Classification Model2408.02676v2 · Anissa Alloula, Rima Mustafa, Daniel R McGowan et al.2024 · 2 citationsarXiv
Multimodal Deformable Image Registration for Long-COVID Analysis Based on Progressive Alignment and Multi-perspective Loss2406.15172v1 · Jiahua Li, James T. Grist, Fergus V. Gleeson et al.2024 · 0 citationsarXiv
Deep Learning Models to Automate the Scoring of Hand Radiographs for Rheumatoid Arthritis2406.09980v1 · Zhiyan Bo, Laura C. Coates, Bartlomiej W. Papiez2024 · 9 citationsarXiv
Labelling with dynamics: A data-efficient learning paradigm for medical image segmentation.38781755 · Mo, Yuanhan, Liu, Fangde, Yang, Guang et al.2024 · 6 citationsMedical image analysis. 2024;95:103196
Paired Diffusion: Generation of related, synthetic PET-CT-Segmentation scans using Linked Denoising Diffusion Probabilistic Models2403.17734v1 · Rowan Bradbury, Katherine A. Vallis, Bartlomiej W. Papiez2024 · 2 citationsarXiv
TiBiX: Leveraging Temporal Information for Bidirectional X-ray and Report Generation2403.13343v1 · Santosh Sanjeev, Fadillah Adamsyah Maani, Arsen Abzhanov et al.2024 · 1 citationarXiv
Spinal Osteophyte Detection via Robust Patch Extraction on minimally annotated X-rays2402.19263v1 · Soumya Snigdha Kundu, Yuanhan Mo, Nicharee Srikijkasemwat et al.2024 · 1 citationarXiv
Prediction of recurrence free survival of head and neck cancer using PET/CT radiomics and clinical information2402.18417v1 · Mona Furukawa, Daniel R. McGowan, Bart\lomiej W. Papież2024 · 5 citationsarXiv
VertXNet: an ensemble method for vertebral body segmentation and identification from cervical and lumbar spinal X-rays.38336974 · Chen, Yao, Mo, Yuanhan, Readie, Aimee et al.2024 · 31 citationsScientific reports. 2024;14(1):3341
Residual Aligner-based Network (RAN): Motion-separable structure for coarse-to-fine discontinuous deformable registration.38000258 · Zheng, Jian-Qing, Wang, Ziyang, Huang, Baoru et al.2023 · 32 citationsMedical image analysis. 2024;91:103038
Normative spatiotemporal fetal brain maturation with satisfactory development at 2 years.37880365 · Namburete, Ana I L, Papież, Bartłomiej W, Fernandes, Michelle et al.2023 · 67 citationsNature. 2023;623(7985):106-114
Autopet Challenge 2023: nnUNet-based whole-body 3D PET-CT Tumour Segmentation2309.13675v2 · Anissa Alloula, Daniel R McGowan, Bart\lomiej W. Papież2023 · 0 citationsarXiv
Multi-Task Cooperative Learning via Searching for Flat Minima2309.12090v1 · Fuping Wu, Le Zhang, Yang Sun et al.2023 · 1 citationarXiv
Towards Automatic Scoring of Spinal X-ray for Ankylosing Spondylitis2308.05123v1 · Yuanhan Mo, Yao Chen, Aimee Readie et al.2023 · 0 citationsarXiv
Accurate volume alignment of arbitrarily oriented tibiae based on a mutual attention network for osteoarthritis analysis.36863214 · Zheng, Jian-Qing, Lim, Ngee Han, Papież, Bartłomiej W2023 · 4 citationsComputerized medical imaging and graphics : the official journal of the Computerized Medical Imaging Society. 2023;106:102204
VertXNet: An Ensemble Method for Vertebrae Segmentation and Identification of Spinal X-Ray2302.03476v1 · Yao Chen, Yuanhan Mo, Aimee Readie et al.2023 · 3 citationsarXiv
An Ensemble Method to Automatically Grade Diabetic Retinopathy with Optical Coherence Tomography Angiography Images2212.06265v1 · Yuhan Zheng, Fuping Wu, Bart\lomiej W. Papież2022 · 3 citationsarXiv
Evolving polarisation of infiltrating and alveolar macrophages in the lung during metastatic progression of melanoma suggests CCR1 as a therapeutic target.36241867 · Tapmeier, Thomas T, Howell, Jake H, Zhao, Lei et al.2022 · 21 citationsOncogene. 2022;41(46):5032-5045
VertXNet: Automatic Segmentation and Identification of Lumbar and Cervical Vertebrae from Spinal X-ray Images2207.05476v1 · Yao Chen, Yuanhan Mo, Aimee Readie et al.2022 · 2 citationsarXiv
Explaining Chest X-ray Pathologies in Natural Language2207.04343v1 · Maxime Kayser, Cornelius Emde, Oana-Maria Camburu et al.2022 · 13 citationsMICCAI 2022
Recursive Deformable Image Registration Network with Mutual Attention2206.01863v2 · Jian-Qing Zheng, Ziyang Wang, Baoru Huang et al.2022 · 13 citationsarXiv
BEAN: Brain Extraction and Alignment Network for 3D Fetal Neurosonography.35654376 · Moser, Felipe, Huang, Ruobing, INTERGROWTH-21(st) Consortium et al.2022 · 22 citationsNeuroImage. 2022;258:119341
MOCOnet: Robust Motion Correction of Cardiovascular Magnetic Resonance T1 Mapping Using Convolutional Neural Networks.34888366 · Gonzales, Ricardo A, Zhang, Qiang, Papież, Bartłomiej W et al.2025 · 26 citationsFrontiers in cardiovascular medicine. 2021;8:768245
Multimodal PET/CT Tumour Segmentation and Prediction of Progression-Free Survival using a Full-Scale UNet with Attention2111.03848v1 · Emmanuelle Bourigault, Daniel R. McGowan, Abolfazl Mehranian et al.2021 · 23 citationsarXiv
D-Net: Siamese based Network with Mutual Attention for Volume Alignment2101.10248v1 · Jian-Qing Zheng, Ngee Han Lim, Bartlomiej W. Papiez2021 · 0 citationsin: International Workshop on Shape in Medical Imaging, Springer, 2020, pp. 73-84
Tumour subregion analysis of colorectal liver metastases using semi-automated clustering based on DCE-MRI: Comparison with histological subregions and impact on pharmacokinetic parameter analysis.32217426 · Franklin, James M, Irving, Benjamin, Papiez, Bartlomiej W et al.2020 · 9 citationsEuropean journal of radiology. 2020;126:108934
Automated fetal brain extraction from clinical Ultrasound volumes using 3D Convolutional Neural Networks1911.07566v2 · Felipe Moser, Ruobing Huang, Aris T. Papageorghiou et al.2019 · 12 citationsarXiv
Image-Based Artefact Removal in Laser Scanning Microscopy.31034401 · Papiez, Bartlomiej W, Markelc, Bostjan, Brown, Graham et al.2021 · 2 citationsIEEE transactions on bio-medical engineering. 2020;67(1):79-87
Patch-based lung ventilation estimation using multi-layer supervoxels.31009928 · Szmul, Adam, Matin, Tahreema, Gleeson, Fergus V et al.2020 · 13 citationsComputerized medical imaging and graphics : the official journal of the Computerized Medical Imaging Society. 2019;74:49-60
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