JL
Jure Leskovec
cs.LGcs.SIcs.AIstat.MLphysics.soc-phcs.CLcs.CYcs.CVcs.IRbioinformatics
On Valency
published · living versionsW_62rs3ws9·v1 · currentpublished
ProteoCraft: Protein Design as Proposal-Verification Search
with Fang Wu, Hongbin Lin, Bingchen Duan, Yuchen Wang +22
1 version
Preprints & journals
337 papers in the corpus · 2005–2026Higher-Order Molecular Grammars for Generative and Foundation Models in Chemistry2610.02186v1 · Yiming Huang, Yujie Zeng, Vijay Prakash Dwivedi et al.2026 · 0 citationsarXiv
UniEvo-VL: An On-policy Self-Distillation Training Recipe for Multimodal Model Self-improvement2609.38721v1 · Fang Wu, Da Xing, Yanjie Huang et al.2026 · 0 citationsarXiv
Data Scarcity and Model Sparsity: Mixtures-of-Experts Overfit More to Repeated Data2609.11917v2 · Atindra Jha, Margaret Li, Jure Leskovec et al.2026 · 0 citationsarXiv
Predicting cellular responses to perturbation across diverse contexts with State.42673963 · Adduri, Abhinav K, Gautam, Dhruv, Bevilacqua, Beatrice et al.2026 · 97 citationsCell. 2026;189(19):5914-5931.e20
Autonomous biomedical research with an artificial intelligence agent.42424436 · Huang, Kexin, Zhang, Serena, Wang, Hanchen et al.2026 · 37 citationsScience (New York, N.Y.). 2026;393(6813):eadz4351
Universal cell embedding provides a foundation model for cell biology.42420460 · Rosen, Yanay, Roohani, Yusuf, Agrawal, Ayush et al.2026 · 18 citationsNature. 2026;656(8126):183-191
Deciphering Fingerprints of 3D Molecular Surfaces for Accurate Epitope Prediction2606.23830v1 · Fang Wu, Weihao Xuan, Jure Leskovec et al.2026 · 0 citationsKDD 2026 AI4Science
M*: A Modular, Extensible, Serving System for Multimodal Models2606.12688v2 · Atindra Jha, Naomi Sagan, Keisuke Kamahori et al.2026 · 0 citationsarXiv
Diffusion Language Model Parallel Decoding via Product-of-Experts Bridge2606.08048v1 · Juntong Shi, Brian L. Trippe, Jure Leskovec et al.2026 · 0 citationsarXiv
SurfDesign: Effective Protein Design on Molecular Surfaces2606.07567v1 · Fang Wu, Shuting Jin, Xiangru Tang et al.2026 · 0 citationsKDD 2026 AI4Science
Found in Conversation: LLMs Teach Themselves to Close the Multi-Turn Gap2605.24432v1 · Tianlang Chen, Shirley Wu, Jure Leskovec2026 · 0 citationsarXiv
Learning over Positive and Negative Edges with Contrastive Message Passing2605.17854v1 · Peter Pao-Huang, Charilaos I. Kanatsoulis, Michael Bereket et al.2026 · 0 citationsarXiv
Bio-BLIP: A Multimodal Architecture for Transferable Reasoning in Genomic Variant Interpretation.42182443 · Gupta, Anvita, Kundaje, Anshul, Buendia, Alejandro et al.2026 · 0 citationsbioRxiv : the preprint server for biology. 2026
BiomniBench: Process-level Evaluation of LLM Agents for Real-world Biomedical Research10.64898/2026.05.12.724604v2 · Qu, Y., Lu, Y., Tu, X. et al.2026 · 1 citationbioRxiv
NoiseRater: Meta-Learned Noise Valuation for Diffusion Model Training2605.08144v2 · Haokai Zhao, Da Xing, Hanqun Cao et al.2026 · 0 citationsarXiv
Proteo-R1: Reasoning Foundation Models for De Novo Protein Design2605.02937v2 · Fang Wu, Weihao Xuan, Heli Qi et al.2026 · 0 citationsICML 2026
TxConformal: Controlling False Discoveries in AI-Driven Therapeutic Discovery10.64898/2026.04.27.721076v1 · Jin, Y., Huang, K., Diamant, N. et al.2026 · 0 citationsbioRxiv
Are Current AI Virtual Cell Models Useful for Scientific Discovery?10.64898/2026.04.23.719015v1 · Bereket, M. D., Leskovec, J.2026 · 0 citationsbioRxiv
KumoRFM-2: Scaling Foundation Models for Relational Learning2604.12596v1 · Valter Hudovernik, Federico L'opez, Vid Kocijan et al.2026 · 0 citationsarXiv
Revised estimates of the types and durations of long Covid symptoms based on claims records from 245 Million US patients10.64898/2026.02.17.26346448v1 · Nilforoshan, H., Reisler, J., Jahanparast, E. et al.2026 · 0 citationsmedRxiv
RelBench v2: A Large-Scale Benchmark and Repository for Relational Data2602.12606v2 · Justin Gu, Rishabh Ranjan, Charilaos Kanatsoulis et al.2026 · 1 citationarXiv
Predictive Query Language: A Domain-Specific Language for Predictive Modeling on Relational Databases2602.09572v3 · Vid Kocijan, Jinu Sunil, Jan Eric Lenssen et al.2026 · 1 citationTaDA@VLDB2026
HumanLM: Simulating Users with State Alignment Beats Response Imitation2603.03303v1 · Shirley Wu, Evelyn Choi, Arpandeep Khatua et al.2026 · 0 citationsarXiv
PluRel: Synthetic Data unlocks Scaling Laws for Relational Foundation Models2602.04029v2 · Vignesh Kothapalli, Rishabh Ranjan, Valter Hudovernik et al.2026 · 1 citationarXiv
Improving Diffusion Language Model Decoding through Joint Search in Generation Order and Token Space2601.20339v2 · Yangyi Shen, Tianjian Feng, Jiaqi Han et al.2026 · 0 citationsarXiv
Surface-based Molecular Design with Multi-modal Flow Matching2601.04506v1 · Fang Wu, Zhengyuan Zhou, Shuting Jin et al.2026 · 4 citationsKDD 2025
End-to-End Test-Time Training for Long Context2512.23675v2 · Arnuv Tandon, Karan Dalal, Xinhao Li et al.2025 · 0 citationsarXiv
PULSAR: a Foundation Model for Multi-scale and Multi-cellular Biology.41394645 · Pang, Kuan, Rosen, Yanay, Kedzierska, Kasia et al.2025 · 6 citationsbioRxiv : the preprint server for biology. 2025
Autonomous AI Agents Discover Aging Interventions from Millions of Molecular Profiles.41332661 · Ying, Kejun, Tyshkovskiy, Alexander, Moldakozhayev, Alibek et al.2025 · 22 citationsbioRxiv : the preprint server for biology. 2025
TGM: a Modular and Efficient Library for Machine Learning on Temporal Graphs2510.07586v1 · Jacob Chmura, Shenyang Huang, Tran Gia Bao Ngo et al.2025 · 0 citationsarXiv
Relational Transformer: Toward Zero-Shot Foundation Models for Relational Data2510.06377v3 · Rishabh Ranjan, Valter Hudovernik, Mark Znidar et al.2025 · 1 citationarXiv
RFG: Self-Improving Diffusion Large Language Models with Reward-Free Guidance2509.25604v2 · Tianlang Chen, Minkai Xu, Jure Leskovec et al.2025 · 0 citationsarXiv
Multiplayer Nash Preference Optimization2509.23102v4 · Fang Wu, Xu Huang, Weihao Xuan et al.2025 · 0 citationsICLR 2026 Oral
Position: The Hidden Costs and Measurement Gaps of Reinforcement Learning with Verifiable Rewards2509.21882v3 · Fang Wu, Aaron Tu, Weihao Xuan et al.2025 · 0 citationsarXiv
A deep reinforcement learning platform for antibiotic discovery.41040195 · Cao, Hanqun, Torres, Marcelo D T, Zhang, Jingjie et al.2025 · 9 citationsbioRxiv : the preprint server for biology. 2025
Uncalibrated Reasoning: GRPO Induces Overconfidence for Stochastic Outcomes2508.11800v1 · Michael Bereket, Jure Leskovec2025 · 0 citationsarXiv
Countrywide natural experiment links built environment to physical activity.40804514 · Althoff, Tim, Ivanovic, Boris, King, Abby C et al.2025 · 54 citationsNature. 2025;645(8080):407-413
PyG 2.0: Scalable Learning on Real World Graphs2507.16991v2 · Matthias Fey, Jinu Sunil, Akihiro Nitta et al.2025 · 9 citationsarXiv
Optimas: Optimizing Compound AI Systems with Globally Aligned Local Rewards2507.03041v4 · Shirley Wu, Parth Sarthi, Shiyu Zhao et al.2025 · 0 citationsarXiv
Relational Deep Learning: Challenges, Foundations and Next-Generation Architectures2506.16654v1 · Vijay Prakash Dwivedi, Charilaos Kanatsoulis, Shenyang Huang et al.2025 · 4 citationsarXiv
Limitations of cell embedding metrics assessed using drifting islands.40500472 · Wang, Hanchen, Leskovec, Jure, Regev, Aviv2026 · 24 citationsNature biotechnology. 2026;44(4):574-577
Large Language Models are Good Relational Learners2506.05725v1 · Fang Wu, Vijay Prakash Dwivedi, Jure Leskovec2025 · 4 citationsarXiv
MIRIAD: Augmenting LLMs with millions of medical query-response pairs2506.06091v2 · Qinyue Zheng, Salman Abdullah, Sam Rawal et al.2025 · 0 citationsarXiv
Biomni: A General-Purpose Biomedical AI Agent.40501924 · Huang, Kexin, Zhang, Serena, Wang, Hanchen et al.2026 · 124 citationsbioRxiv : the preprint server for biology. 2025
RelDiff: Relational Data Generative Modeling with Graph-Based Diffusion Models2506.00710v1 · Valter Hudovernik, Minkai Xu, Juntong Shi et al.2025 · 0 citationsarXiv
Relational Graph Transformer2505.10960v2 · Vijay Prakash Dwivedi, Sri Jaladi, Yangyi Shen et al.2025 · 1 citationarXiv
SpatialAgent: An Autonomous AI Agent for Spatial Biology10.1101/2025.04.03.646459v2 · Wang, H., He, Y., Coelho, P. P. et al.2025 · 49 citationsbioRxiv
A large-scale benchmark for network inference from single-cell perturbation data.40069299 · Chevalley, Mathieu, Roohani, Yusuf H, Mehrjou, Arash et al.2025 · 26 citationsCommunications biology. 2025;8(1):412
Automated Hypothesis Validation with Agentic Sequential Falsifications2502.09858v1 · Kexin Huang, Ying Jin, Ryan Li et al.2025 · 7 citationsarXiv
RelGNN: Composite Message Passing for Relational Deep Learning2502.06784v2 · Tianlang Chen, Charilaos Kanatsoulis, Jure Leskovec2025 · 1 citationarXiv
Career total: 702 works. 337 are in this corpus.Showing the 50 most recent.
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