GE
Gary Egan
Magnetic Resonance ImagingneurosciencefMRIMRIBrain MappingBraincs.CVPositron-Emission TomographyImage Processing, Computer-Assistedeess.IV
On Valency
published · living versionsW_ctyr365s·v1 · currentpublished
Identifying the Best Machine Learning Algorithms for Brain Tumor Segmentation, Progression Assessment, and Overall Survival Prediction in the BRATS Challenge
with Spyridon Bakas, Mauricio Reyes, Andras Jakab, Stefan Bauer +422
1 version
Preprints & journals
356 papers in the corpus · 1991–2026Segment any tumour: an uncertainty-aware vision foundation model for whole-body analysis.42711328 · Peiris, Himashi, Wang, Sizhe, Egan, Gary et al.2026 · 1 citationNature communications. 2026;17(1)
Psychedelics align brain activity with context.42618786 · Stoliker, Devon, Novelli, Leonardo, Khajehnejad, Moein et al.2026 · 15 citationsNature. 2026;656(8129):936-947
Population-based Brain Templates for Ultra-Low-Field MRI.42303984 · Islam, Kh Tohidul, Zakavi, Parisa, Zhong, Shenjun et al.2026 · 0 citationsScientific data. 2026;13(1)
Identification of Biological Subtypes of Friedreich Ataxia with Structural MRI-based Machine Learning.41805414 · Pontillo, Giuseppe, Penna, Simone, Arrigoni, Filippo et al.2026 · 2 citationsRadiology. 2026;318(3):e251386
Metabolic Connectivity Gradients of the Human Brain10.64898/2026.01.28.702441v1 · Deery, H. A., Moran, C., Liang, E. et al.2026 · 2 citationsbioRxiv
SynPoC: a high-quality generative diffusion model for transforming ultra-low-field point-of-care MRI using high-field MRI representations.41580445 · Islam, Kh Tohidul, Dayarathna, Sanuwani, Zhong, Shenjun et al.2026 · 2 citationsScientific reports. 2026;16(1):3285
Brain glucodynamic variability is an essential feature of the metabolism-cognition relationship.41528871 · Deery, Hamish A, Liang, Emma, Moran, Chris et al.2026 · 13 citationsProceedings of the National Academy of Sciences of the United States of America. 2026;123(3):e2510850123
Motion-Informed Deep Learning for Human Brain Magnetic Resonance Image Reconstruction Framework.41350123 · Chen, Zhifeng, Pawar, Kamlesh, Islam, Kh Tohidul et al.2025 · 2 citationsNMR in biomedicine. 2026;39(1):e70209
Metabolic brain networks switch between a sparsely connected baseline and highly integrated states to support cognition10.64898/2025.12.17.695042v3 · Deery, H., Liang, E., Moran, C. et al.2025 · 1 citationbioRxiv
Correction: PixCUE: Joint Uncertainty Estimation and Image Reconstruction in MRI using Deep Pixel Classification.39904944 · Ekanayake, Mevan, Pawar, Kamlesh, Chen, Zhifeng et al.2025 · 1 citationJournal of imaging informatics in medicine. 2025;38(6):4377
The association of retinal vessel calibre, white matter hyperintensities and cognitive decline in community-dwelling older adults.40966613 · Robb, Catherine, Brodtmann, Amy, Woods, Robyn L et al.2025 · 1 citationAge and ageing. 2025;54(9)
Sex Differences in the Association of Cerebral Blood Flow and Glucose Metabolism in Normative Aging.40844193 · Deery, Hamish A, Moran, Chris, Liang, Emma X et al.2025 · 2 citationsHuman brain mapping. 2025;46(12):e70328
Towards fair decentralized benchmarking of healthcare AI algorithms with the Federated Tumor Segmentation (FeTS) challenge.40628696 · Zenk, Maximilian, Baid, Ujjwal, Pati, Sarthak et al.2025 · 16 citationsNature communications. 2025;16(1):6274
AI improves consistency in regional brain volumes measured in ultra-low-field MRI and 3T MRI.40534653 · Islam, Kh Tohidul, Zhong, Shenjun, Zakavi, Parisa et al.2026 · 8 citationsFrontiers in neuroimaging. 2025;4:1588487
Correction: Neural mechanisms of psychedelic visual imagery.39572725 · Stoliker, Devon, Preller, Katrin H, Novelli, Leonardo et al.2025 · 1 citationMolecular psychiatry. 2025;30(4):1714
Metabolic connectivity has greater predictive utility for age and cognition than functional connectivity.40008331 · Deery, Hamish A, Liang, Emma X, Moran, Chris et al.2026 · 15 citationsBrain communications. 2025;7(1):fcaf075
Correlations Between MR Apparent Diffusion Coefficients and PET Standard Uptake Values in Simultaneous MR-PET Imaging of Prostate Cancer.39940674 · Pozaruk, Andrii, Atamaniuk, Vitaliy, Pawar, Kamlesh et al.2025 · 1 citationInternational journal of molecular sciences. 2025;26(3)
PixCUE: Joint Uncertainty Estimation and Image Reconstruction in MRI using Deep Pixel Classification.39633210 · Ekanayake, Mevan, Pawar, Kamlesh, Chen, Zhifeng et al.2025 · 4 citationsJournal of imaging informatics in medicine. 2025;38(4):2071-2084
Reconfiguration of metabolic connectivity in ageing.39616242 · Deery, Hamish A, Liang, Emma X, Siddiqui, M Navyaan et al.2024 · 15 citationsCommunications biology. 2024;7(1):1600
Sex differences in the rates and association of cerebral blood flow and glucose metabolism in normative ageing.10.1101/2024.11.27.625794v2 · Deery, H., Moran, C., Liang, E. X. et al.2024 · 1 citationbioRxiv
Incidental findings in research brain MRI: Definition, prevalence and ethical implications.39301891 · de Jong, Kenneth J, Poon, Emma, Foo, Michelle et al.2025 · 2 citationsJournal of medical imaging and radiation oncology. 2025;69(1):35-45
Deep kernel representations of latent space features for low-dose PET-MR imaging robust to variable dose reduction2409.06198v1 · Cameron Dennis Pain, Yasmeen George, Alex Fornito et al.2024 · 1 citationarXiv
SeCo-INR: Semantically Conditioned Implicit Neural Representations for Improved Medical Image Super-Resolution2409.01013v1 · Mevan Ekanayake, Zhifeng Chen, Gary Egan et al.2024 · 4 citationsarXiv
Peripheral insulin resistance attenuates cerebral glucose metabolism and impairs working memory in healthy adults.40604159 · Deery, Hamish A, Liang, Emma, Di Paolo, Robert et al.2025 · 19 citationsnpj metabolic health and disease. 2024;2(1):17
Computed Tomography-Derived Extracellular Volume Fraction and Splenic Size for Liver Fibrosis Staging.38858799 · Kutaiba, Numan, Tran, Anthony, Ashraf, Saad et al.2024 · 3 citationsJournal of computer assisted tomography. 2024;48(6):837-843
Gradient of microstructural damage along the dentato-thalamo-cortical tract in Friedreich ataxia.38952134 · Cocozza, Sirio, Bosticardo, Sara, Battocchio, Matteo et al.2024 · 5 citationsAnnals of clinical and translational neurology. 2024;11(7):1691-1702
The association of regional cerebral blood flow and glucose metabolism in normative ageing and insulin resistance.38914735 · Deery, Hamish A, Liang, Emma, Di Paolo, Robert et al.2024 · 23 citationsScientific reports. 2024;14(1):14574
The impact of hepatic and splenic volumetric assessment in imaging for chronic liver disease: a narrative review.38886297 · Kutaiba, Numan, Chung, William, Goodwin, Mark et al.2026 · 18 citationsInsights into imaging. 2024;15(1):146
Metabolic connectivity in ageing.10.1101/2024.06.16.599247v1 · Deery, H., Liang, E., Siddiqui, N. M. et al.2024 · 5 citationsbioRxiv
Neural mechanisms of psychedelic visual imagery.38862674 · Stoliker, Devon, Preller, Katrin H, Novelli, Leonardo et al.2025 · 30 citationsMolecular psychiatry. 2025;30(4):1259-1266
Motion-Informed Deep Learning for Brain MR Image Reconstruction Framework2405.17756v1 · Zhifeng Chen, Kamlesh Pawar, Kh Tohidul Islam et al.2024 · 1 citationarXiv
Localized Changes in Dentate Nucleus Shape and Magnetic Susceptibility in Friedreich Ataxia.38644761 · Harding, Ian H, Nur Karim, Muhammad Ikhsan, Selvadurai, Louisa P et al.2024 · 10 citationsMovement disorders : official journal of the Movement Disorder Society. 2024;39(7):1109-1118
Insulin resistance alters the coupling between cerebral blood flow and glucose metabolism in younger and older adults: Implications for neurovascular coupling10.1101/2024.02.07.579389v1 · Deery, H., Liang, E., Di Paolo, R. et al.2024 · 0 citationsbioRxiv
Neurodesk: an accessible, flexible and portable data analysis environment for reproducible neuroimaging.38191935 · Renton, Angela I, Dao, Thuy T, Johnstone, Tom et al.2024 · 71 citationsNature methods. 2024;21(5):804-808
Neural Mechanisms of Resting-State Networks and the Amygdala Underlying the Cognitive and Emotional Effects of Psilocybin.38185235 · Stoliker, Devon, Novelli, Leonardo, Vollenweider, Franz X et al.2024 · 45 citationsBiological psychiatry. 2024;96(1):57-66
McSTRA: A multi-branch cascaded swin transformer for point spread function-guided robust MRI reconstruction.38061154 · Ekanayake, Mevan, Pawar, Kamlesh, Harandi, Mehrtash et al.2024 · 27 citationsComputers in biology and medicine. 2024;168:107775
Improving portable low-field MRI image quality through image-to-image translation using paired low- and high-field images.38040835 · Islam, Kh Tohidul, Zhong, Shenjun, Zakavi, Parisa et al.2023 · 86 citationsScientific reports. 2023;13(1):21183
Free-Water Imaging in Friedreich Ataxia Using Multi-Compartment Models.37927246 · Fernandez, Lara, Corben, Louise A, Bilal, Hiba et al.2024 · 8 citationsMovement disorders : official journal of the Movement Disorder Society. 2024;39(2):370-379
STAREE-Mind Imaging Study: a randomised placebo-controlled trial of atorvastatin for prevention of cerebrovascular decline and neurodegeneration in older individuals.37920607 · Harding, Ian H, Ryan, Joanne, Heritier, Stephane et al.2023 · 8 citationsBMJ neurology open. 2023;5(2):e000541
Deep Learning for Computed Tomography Assessment of Hepatic Fibrosis and Cirrhosis: A Systematic Review.40206310 · Kutaiba, Numan, Dahan, Ariel, Goodwin, Mark et al.2025 · 7 citationsMayo Clinic proceedings. Digital health. 2023;1(4):574-585
The shape of things to come. Mapping spatiotemporal progression of striatal morphology in Huntington disease: The IMAGE-HD study.37751638 · Wilkes, Fiona A, Jakabek, David, Walterfang, Mark et al.2023 · 5 citationsPsychiatry research. Neuroimaging. 2023;335:111717
Hippocampal morphology in Huntington's disease, implications for plasticity and pathogenesis: The IMAGE-HD study.37598529 · Wilkes, Fiona A, Jakabek, David, Walterfang, Mark et al.2023 · 10 citationsPsychiatry research. Neuroimaging. 2023;335:111694
CL-MRI: Self-Supervised Contrastive Learning to Improve the Accuracy of Undersampled MRI Reconstruction2306.00530v3 · Mevan Ekanayake, Zhifeng Chen, Mehrtash Harandi et al.2023 · 12 citationsarXiv
The relationship between long-term blood pressure variability and cortical thickness in older adults.37331246 · Gutteridge, D S, Segal, A, McNeil, J J et al.2023 · 10 citationsNeurobiology of aging. 2023;129:157-167
The maternal brain is more flexible and responsive at rest: effective connectivity of the parental caregiving network in postpartum mothers.36959247 · Orchard, Edwina R, Voigt, Katharina, Chopra, Sidhant et al.2023 · 24 citationsScientific reports. 2023;13(1):4719
Neurodesk: An accessible, flexible, and portable data analysis environment for reproducible neuroimaging.36993557 · Renton, Angela I, Dao, Thuy T, Johnstone, Tom et al.2024 · 10 citationsResearch square. 2023
Reduced cerebello-cerebral functional connectivity correlates with disease severity and impaired white matter integrity in Friedreich ataxia.36859626 · Kerestes, Rebecca, Cummins, Hannah, Georgiou-Karistianis, Nellie et al.2023 · 12 citationsJournal of neurology. 2023;270(5):2360-2369
The association between sex hormones and the change in brain-predicted age difference in older women.36807922 · Wrigglesworth, Jo, Harding, Ian H, Islam, Rakibul M et al.2023 · 4 citationsClinical endocrinology. 2023;98(5):692-699
Metabolic and functional connectivity provide unique and complementary insights into cognition-connectome relationships.35441214 · Voigt, Katharina, Liang, Emma X, Misic, Bratislav et al.2023 · 44 citationsCerebral cortex (New York, N.Y. : 1991). 2023;33(4):1476-1488
Health-related heterogeneity in brain aging and associations with longitudinal change in cognitive function.36688169 · Wrigglesworth, Jo, Ryan, Joanne, Ward, Phillip G D et al.2024 · 14 citationsFrontiers in aging neuroscience. 2022;14:1063721
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