OR
O. Radulescu
q-bio.MNModels, Biologicalsystems biologycs.SCmath.DSAlgorithmsGene Expression Regulation, DevelopmentalMetabolic Networks and PathwaysTranscription, Geneticmolecular biology
On Valency
published · living versionsW_hka7c5pp·v1 · currentpublished
Timescales in shear banding of wormlike micelles
with P. D. Olmsted, J. P. Decruppe, S. Lerouge, J. F. Berret +1
1 version
Preprints & journals
96 papers in the corpus · 1998–2026Cell heterogeneity contributes to the variable response of HIV-1 to latency-reversing agents.42853951 · Topno, Rachel, Karaki, Hussein, Mazzarda, Flavia et al.2026 · 1 citationScience advances. 2026;12(41):eaeb1435
Laplacian Dynamics and Kron Reduction in Species-Reaction Graphs of Chemical Reaction Networks.42142251 · Gasparyan, Manvel, Bhalla, Upinder S, Radulescu, Ovidiu et al.2026 · 0 citationsBulletin of mathematical biology. 2026;88(6)
Mitotic reactivation and transcriptional bursting govern transcriptional noise in the early Drosophila embryo.41978991 · Maillard, Louise, Pimmett, Virginia L, Douaihy, Maria et al.2026 · 0 citationsDevelopment (Cambridge, England). 2026;153(7)
Open and sustainable AI: challenges, opportunities and the road ahead in the life sciences.41862658 · Farrell, Gavin, Adamidi, Eleni, Andrade Buono, Rafael et al.2026 · 6 citationsNature methods. 2026;23(9):1734-1745
Automated Hierarchical Block Decomposition of Biochemical Networks.41418017 · Gasparyan, Manvel, Tamby, Satya, HarshaRani, G V et al.2026 · 0 citationsIEEE transactions on computational biology and bioinformatics. 2026;23(2):631-643
A partition-based spatial entropy for co-occurrence analysis with broad application.10.64898/2026.02.23.707425v1 · Otto, T., Nemri, A., Claessens, A. et al.2026 · 0 citationsbioRxiv
Single-Molecule DNA Footprinting and Transcription Imaging Reveal the Molecular Mechanisms of Promoter Dynamics10.1101/2025.11.26.690466v1 · Slaninova, V., Mazzarda, F., Dalakishvili, L. et al.2025 · 2 citationsbioRxiv
Coordinated active repression operates via transcription factor cooperativity and multiple inactive promoter states in a developing organism.40890123 · Pimmett, Virginia L, Douaihy, Maria, Maillard, Louise et al.2025 · 6 citationsNature communications. 2025;16(1):8157
G-quadruplexes are promoter elements controlling nucleosome exclusion and RNA polymerase II pausing.40696173 · Esnault, Cyril, Zine El Aabidine, Amal, Robert, Marie-Cécile et al.2025 · 33 citationsNature genetics. 2025;57(8):1981-1993
Improved prediction of MAPKi response duration in melanoma patients using genomic data and machine learning.40634697 · Dandou, Sarah, Amin, Kriti, D'Hondt, Véronique et al.2025 · 2 citationsNPJ precision oncology. 2025;9(1):231
MelanoDB: A dataset of clinical and molecular features of patients with advanced melanoma treated with MAPK inhibitors.40615439 · Dandou, Sarah, Vendrell, Julie A, Solassol, Jérôme et al.2025 · 3 citationsScientific data. 2025;12(1):1144
Identifying Markov Chain Models from Time-to-Event Data: An Algebraic Approach.39625575 · Radulescu, Ovidiu, Grigoriev, Dima, Seiss, Matthias et al.2024 · 7 citationsBulletin of mathematical biology. 2024;87(1):11
Mathematical basis and toolchain for hierarchical optimization of biochemical networks.39621764 · Viswan, Nisha Ann, Tribut, Alexandre, Gasparyan, Manvel et al.2024 · 3 citationsPLoS computational biology. 2024;20(12):e1012624
Optogenetic manipulation of nuclear Dorsal reveals temporal requirements and consequences for transcription.39651203 · Pimmett, Virginia L, McGehee, James, Trullo, Antonio et al.2025 · 5 citationsbioRxiv : the preprint server for biology. 2024
Hierarchical optimization of biochemical networks10.1101/2024.08.06.606818v1 · Viswan, N. A., Tribut, A., Gasparyan, M. et al.2024 · 3 citationsbioRxiv
Deciphering oxygen distribution and hypoxia profiles in the tumor microenvironment: a data-driven mechanistic modeling approach.38815610 · Kumar, P, Lacroix, M, Dupré, P et al.2024 · 7 citationsPhysics in medicine and biology. 2024;69(12)
Diverse and weakly immunogenic var gene expression facilitates malaria infection10.1101/2023.12.27.23300577v1 · Bhardwaj, I., Nyarko, P. B., Ashn, A. B. et al.2024 · 0 citationsmedRxiv
Improved prediction of the response duration to MAPK inhibitors in patients with advanced melanoma using baseline genomic data and machine learning algorithms10.1101/2023.12.07.23299389v1 · Dandou, S., Amin, K., D'Hondt, V. et al.2023 · 0 citationsmedRxiv
A Skin Microbiome Model with AMP interactions and Analysis of Quasi-Stability vs Stability in Population Dynamics2310.15201v1 · El'ea Thibault Greugny (Lifeware), Francois Fages (Lifeware), Ovidiu Radulescu (UM) et al.2023 · 4 citationsarXiv
Transcriptional Stochasticity as a Key Aspect of HIV-1 Latency.37766375 · Damour, Alexia, Slaninova, Vera, Radulescu, Ovidiu et al.2023 · 17 citationsViruses. 2023;15(9)
BurstDECONV: a signal deconvolution method to uncover mechanisms of transcriptional bursting in live cells.37522372 · Douaihy, Maria, Topno, Rachel, Lagha, Mounia et al.2023 · 25 citationsNucleic acids research. 2023;51(16):e88
A Computational Approach to Polynomial Conservation Laws2212.14881v3 · Aur'elien Desoeuvres, Alexandru Iosif, Christoph Luders et al.2022 · 0 citationsarXiv
Reduction of Chemical Reaction Networks with Approximate Conservation Laws2212.13474v2 · Aur'elien Desoeuvres, Alexandru Iosif, Christoph Luders et al.2022 · 3 citationsarXiv
[Resistance to BRAF inhibitors: A lesson from clinical observations].35766855 · Dahmani, Cylia, Corre, Eulalie, Dandou, Sarah et al.2022 · 2 citationsMedecine sciences : M/S. 2022;38(6-7):570-578
Qualitative dynamics of chemical reaction networks: an investigation using partial tropical equilibrations2205.07360v1 · Aur'elien Desoeuvres, Peter Szmolyan, Ovidiu Radulescu2022 · 7 citationsarXiv
ODEbase: a repository of ODE systems for systems biology.36699350 · Lüders, Christoph, Sturm, Thomas, Radulescu, Ovidiu2023 · 11 citationsBioinformatics advances. 2022;2(1):vbac027
Computational Model of Heterogeneity in Melanoma: Designing Therapies and Predicting Outcomes.35494017 · Hodgkinson, Arran, Trucu, Dumitru, Lacroix, Matthieu et al.2022 · 8 citationsFrontiers in oncology. 2022;12:857572
The control of transcriptional memory by stable mitotic bookmarking.35246556 · Bellec, Maëlle, Dufourt, Jérémy, Hunt, George et al.2022 · 53 citationsNature communications. 2022;13(1):1176
Stochastic pausing at latent HIV-1 promoters generates transcriptional bursting.34301927 · Tantale, Katjana, Garcia-Oliver, Encar, Robert, Marie-Cécile et al.2021 · 75 citationsNature communications. 2021;12(1):4503
Quantitative imaging of transcription in living Drosophila embryos reveals the impact of core promoter motifs on promoter state dynamics.34301936 · Pimmett, Virginia L, Dejean, Matthieu, Fernandez, Carola et al.2021 · 87 citationsNature communications. 2021;12(1):4504
Comparison of SYK Signaling Networks Reveals the Potential Molecular Determinants of Its Tumor-Promoting and Suppressing Functions.33670716 · Buffard, Marion, Naldi, Aurélien, Freiss, Gilles et al.2021 · 8 citationsBiomolecules. 2021;11(2)
Algorithmic Reduction of Biological Networks With Multiple Time Scales2010.10129v2 · Niclas Kruff, Christoph Luders, Ovidiu Radulescu et al.2020 · 9 citationsMath. Comput. Sci., 15(3):499-534, September 2021
Push-forward method for piecewise deterministic biochemical simulations2009.06577v2 · Guilherme C.P. Innocentini, Arran Hodgkinson, Fernando Antoneli et al.2020 · 0 citationsTheoretical Computer Science Volume 893, 21 November 2021, Pages 17-40
Interval Constraint Satisfaction and Optimization for Biological Homeostasis and Multistationarity10.1101/2020.05.14.095315v1 · Desoeuvres, A., Trombettoni, G., Radulescu, O.2020 · 1 citationbioRxiv
A Linear Algebra Approach for Detecting Binomiality of Steady State Ideals of Reversible Chemical Reaction Networks2002.12693v2 · Hamid Rahkooy, Ovidiu Radulescu, Thomas Sturm2020 · 5 citationsProc. CASC 2020, LNCS 12291, pp.492-509, Springer 2020
An in silico analysis of robust but fragile gene regulation links enhancer length to robustness.31730659 · Barr, Kenneth, Reinitz, John, Radulescu, Ovidiu2020 · 9 citationsPLoS computational biology. 2019;15(11):e1007497
[Zelda, maestro of the zygotic genome awakening].31845868 · Dufourt, Jeremy, Bellec, Maëlle, Messina, Olivier et al.2020 · 1 citationMedecine sciences : M/S. 2019;35(11):821-841
Network Reconstruction and Significant Pathway Extraction Using Phosphoproteomic Data from Cancer Cells.31472481 · Buffard, Marion, Naldi, Aurélien, Radulescu, Ovidiu et al.2020 · 8 citationsProteomics. 2019;19(21-22):e1800450
Effective computational methods for hybrid stochastic gene networks1905.00235v1 · Guilherme C.P. Innocentini, Fernando Antoneli, Arran Hodgkinson et al.2019 · 2 citationsarXiv
Identifying the Parametric Occurrence of Multiple Steady States for some Biological Networks1902.04882v1 · R. Bradford, J.H. Davenport, M. England et al.2019 · 29 citationsJournal of Symbolic Computation, volume 98, pp. 84 - 119, Elsevier 2020
Publisher Correction: Temporal control of gene expression by the pioneer factor Zelda through transient interactions in hubs.30644405 · Dufourt, Jeremy, Trullo, Antonio, Hunter, Jennifer et al.2020 · 4 citationsNature communications. 2019;10(1):315
Temporal control of gene expression by the pioneer factor Zelda through transient interactions in hubs.30518940 · Dufourt, Jeremy, Trullo, Antonio, Hunter, Jennifer et al.2019 · 150 citationsNature communications. 2018;9(1):5194
Spatio-Genetic and phenotypic modelling elucidates resistance and re-sensitisation to treatment in heterogeneous melanoma.30503930 · Hodgkinson, Arran, Le Cam, Laurent, Trucu, Dumitru et al.2020 · 21 citationsJournal of theoretical biology. 2019;466:84-105
Metastable regimes and tipping points of biochemical networks with potential applications in precision medicine10.1101/466714v1 · Samal, S. S., Krishnan, J., Esfahan, A. i. H. et al.2018 · 6 citationsbioRxiv
Remembering the past: Mitotic bookmarking in a developing embryo.30417158 · Bellec, Maelle, Radulescu, Ovidiu, Lagha, Mounia2020 · 23 citationsCurrent opinion in systems biology. 2018;11:41-49
Cyclin A-cdk1-Dependent Phosphorylation of Bora Is the Triggering Factor Promoting Mitotic Entry.29870721 · Vigneron, Suzanne, Sundermann, Lena, Labbé, Jean-Claude et al.2018 · 118 citationsDevelopmental cell. 2018;45(5):637-650.e7
Signal Propagation in Sensing and Reciprocating Cellular Systems with Spatial and Structural Heterogeneity.29721746 · Hodgkinson, Arran, Uzé, Gilles, Radulescu, Ovidiu et al.2019 · 2 citationsBulletin of mathematical biology. 2018;80(7):1900-1936
Time Dependent Stochastic mRNA and Protein Synthesis in Piecewise-deterministic Models of Gene Networks.10.1101/278226v2 · Innocentini, G., Hodgkinson, A., Radulescu, O.2018 · 11 citationsbioRxiv
Centralized Networks to Generate Human Body Motions.29240694 · Vakulenko, Sergei, Radulescu, Ovidiu, Morozov, Ivan et al.2018 · 5 citationsSensors (Basel, Switzerland). 2017;17(12)
Linking metabolic network features to phenotypes using sparse group lasso.29077809 · Samal, Satya Swarup, Radulescu, Ovidiu, Weber, Andreas et al.2018 · 11 citationsBioinformatics (Oxford, England). 2017;33(21):3445-3453
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