EA
Erman Ayday
cs.CRcs.LGGenomicscs.AIPrivacyprivacybioinformaticsComputer Securitycs.CYcs.SI
On Valency
published · living versionsW_mmefdpxh·v1 · currentpublished
LEANGUARD: Lean-Verified Guardrails for Tool-Using Agents
with Sreehari Sankar, Debargha Ganguly, Vikash Singh, Mohsen Hariri +15
1 version
W_svq73au5·v1published
Preprints & journals
92 papers in the corpus · 2012–2026Sequent-Prover: Training Agents for Formal, Checkable SMT-based Reasoning2610.15258v1 · Debargha Ganguly, Weicong Chen, Mohsen Hariri et al.2026 · 0 citationsarXiv
Watermarks Without Verification: AI Text Watermarking After the EU AI Act2609.09604v1 · Alexander Nemecek, Vipin Chaudhary, Erman Ayday2026 · 0 citationsarXiv
SoK: Privacy Attacks on Machine Learning via Explainable AI2609.10627v1 · Abdullah Caglar Oksuz, Anisa Halimi, Erman Ayday2026 · 0 citationsarXiv
Seeing Less Is Not Seeing Safely: Privacy Leakage from Task-Scoped Robot Perception Exports2609.03055v1 · Yuqiao Xu, Erman Ayday2026 · 0 citationsarXiv
Auditing Cross-Lingual Fairness in Language Model Watermarking2608.20047v1 · Alexander Nemecek, Osama Zafar, Debargha Ganguly et al.2026 · 0 citationsarXiv
Beyond Detection: Evaluating Defensive LLMs Against AI-Generated Social Engineering in Live Turn-by-Turn Interaction2608.10239v1 · Yuqiao Xu, Osama Zafar, Alexander Nemecek et al.2026 · 0 citationsarXiv
Is a Win-Win possible? Achieving pareto-optimal privacy-utility balance in fine-tuned genome language model embeddings against embedding reconstruction attacks.42412845 · Al-Saidi, Reem, Ayday, Erman, Kobti, Ziad et al.2026 · 1 citationBioinformatics (Oxford, England). 2026;42(1)
CausalGuard: Conformal Inference under Graph Uncertainty2605.21928v1 · Vikash Singh, Weicong Chen, Debargha Ganguly et al.2026 · 0 citationsarXiv
Privacy Policy Enforcement Guardrails for Data-Sensitive Retrieval-Augmented Generation2605.17034v2 · Osama Zafar, Alexander Nemecek, Yiqian Zhang et al.2026 · 0 citationsarXiv
The End of Trust: How Agentic AI Breaks Security Assumptions2605.16436v2 · Osama Zafar, Alexander Nemecek, Erman Ayday2026 · 0 citationsarXiv
Privacy-preserving verification of preprocessing in federated learning for genomic data.41907170 · Li, Wenbiao, Halimi, Anisa, Vaidya, Jaideep et al.2026 · 0 citationsJAMIA open. 2026;9(2):ooag040
Quantifying Memorization and Privacy Risks in Genomic Language Models2603.08913v3 · Alexander Nemecek, Wenbiao Li, Xiaoqian Jiang et al.2026 · 0 citationsarXiv
Authenticated Contradictions from Desynchronized Provenance and Watermarking2603.02378v3 · Alexander Nemecek, Hengzhi He, Guang Cheng et al.2026 · 1 citationarXiv
LoMime: Query-Efficient Membership Inference using Model Extraction in Label-Only Settings2602.18934v3 · Abdullah Caglar Oksuz, Anisa Halimi, Erman Ayday2026 · 0 citationsarXiv
Neighborhood Blending: A Lightweight Inference-Time Defense Against Membership Inference Attacks2602.12943v1 · Osama Zafar, Shaojie Zhan, Tianxi Ji et al.2026 · 0 citationsarXiv
Privacy-Preserving AI-Enabled Decentralized Learning and Employment Records System2601.02720v1 · Yuqiao Xu, Mina Namazi, Sahith Reddy Jalapally et al.2026 · 1 citationarXiv
PROVGEN: A Privacy-Preserving Approach for Outcome Validation in Genomic Research.42211762 · Jiang, Yuzhou, Ji, Tianxi, Ayday, Erman2026 · 0 citationsProceedings on Privacy Enhancing Technologies. Privacy Enhancing Technologies Symposium. 2026;2026(2):642-661
Governance-Aware AI Workflow Infrastructure for Secure and Policy-Compliant Healthcare Analytics.42713390 · Ali, Shazer, Ali Hassan, Muhammad, Ahmad, Huzaifa et al.2026 · 1 citationIEEE open journal of the Computer Society. 2026;7:1377-1388
Optimal Watermark Generation under Type I and Type II Errors2512.05333v2 · Hengzhi He, Shirong Xu, Alexander Nemecek et al.2025 · 0 citationsarXiv
A reinforcement learning-based approach for dynamic privacy protection in genomic data sharing beacons.41286986 · Poorghaffar Aghdam, Masoud, Shukueian Tabrizi, Sobhan, Ayöz, Kerem et al.2026 · 2 citationsGenome biology. 2025;26(1):400
Digital Agriculture Sandbox for Collaborative Research2511.15990v2 · Osama Zafar, Rosemarie Santa Gonz'alez, Alfonso Morales et al.2025 · 0 citationsarXiv
Comparing Reconstruction Attacks on Pretrained Versus Full Fine-tuned Large Language Model Embeddings on Homo Sapiens Splice Sites Genomic Data2511.07481v1 · Reem Al-Saidi, Erman Ayday, Ziad Kobti2025 · 1 citationarXiv
Exploring Membership Inference Vulnerabilities in Clinical Large Language Models2510.18674v1 · Alexander Nemecek, Zebin Yun, Zahra Rahmani et al.2025 · 1 citationarXiv
PQFed: A Privacy-Preserving Quality-Controlled Federated Learning Framework2509.21704v1 · Weiqi Yue, Wenbiao Li, Yuzhou Jiang et al.2025 · 0 citationsarXiv
A User-Centric, Privacy-Preserving, and Verifiable Ecosystem for Personal Data Management and Utilization2506.22606v2 · Osama Zafar, Mina Namazi, Yuqiao Xu et al.2025 · 5 citationsarXiv
ZKPROV: A Zero-Knowledge Approach to Dataset Provenance for Large Language Models2506.20915v2 · Mina Namazi, Alexander Nemecek, Erman Ayday2025 · 0 citationsarXiv
Empowering Digital Agriculture: A Privacy-Preserving Framework for Data Sharing and Collaborative Research2506.20872v1 · Osama Zafar, Rosemarie Santa Gonz'alez, Mina Namazi et al.2025 · 2 citationsarXiv
The Feasibility of Topic-Based Watermarking on Academic Peer Reviews2505.21636v3 · Alexander Nemecek, Yuzhou Jiang, Erman Ayday2025 · 0 citationsarXiv
Watermarking Without Standards Is Not AI Governance2505.23814v2 · Alexander Nemecek, Yuzhou Jiang, Erman Ayday2025 · 1 citationarXiv
Cluster-Aware Attacks on Graph Watermarks2504.17971v3 · Alexander Nemecek, Emre Yilmaz, Erman Ayday2025 · 0 citationsarXiv
Privacy-preserving framework for genomic computations via multi-key homomorphic encryption.39891347 · Namazi, Mina, Farahpoor, Mohammadali, Ayday, Erman et al.2025 · 10 citationsBioinformatics (Oxford, England). 2025;41(3)
Privacy-Preserving Model and Preprocessing Verification for Machine Learning2501.08236v1 · Wenbiao Li, Anisa Halimi, Xiaoqian Jiang et al.2025 · 0 citationsarXiv
Privacy-Preserving Collaborative Population Stratification with Dynamic Algorithm and Hyperparameter Selection.41960139 · Ghasemian, Maryam, Gerido, Lynette Hammond, Ayday, Erman2026 · 0 citationsACM-BCB ... ... : the ... ACM Conference on Bioinformatics, Computational Biology and Biomedicine. ACM Conference on Bioinformatics, Computational Biology and Biomedicine. 2025;2025
Validating GWAS Findings through Reverse Engineering of Contingency Tables2411.11169v1 · Yuzhou Jiang, Erman Ayday2024 · 0 citationsarXiv
Safeguarding Privacy in Genome Research: A Comprehensive Framework for Authors.39386658 · Ghasemian, Maryam, Gerido, Lynette Hammond, Ayday, Erman2025 · 1 citationbioRxiv : the preprint server for biology. 2024
Privacy-Preserving Data Linkage Across Private and Public Datasets for Collaborative Agriculture Research2409.06069v1 · Osama Zafar, Rosemarie Santa Gonzalez, Gabriel Wilkins et al.2024 · 1 citationarXiv
Privacy-Preserving Collaborative Genomic Research: A Real-Life Deployment and Vision2407.09004v1 · Zahra Rahmani, Nahal Shahini, Nadav Gat et al.2024 · 5 citationsarXiv
Privacy-Preserving Optimal Parameter Selection for Collaborative Clustering2406.05545v1 · Maryam Ghasemian, Erman Ayday2024 · 1 citationarXiv
An Ethical Approach to Genomic Privacy Preserving Technology Development.40200994 · Gerido, Lynette Hammond, Ayday, Erman2025 · 4 citationsProceedings. IEEE International Conference on Healthcare Informatics. 2024;2024:638-641
Topic-Based Watermarks for Large Language Models2404.02138v7 · Alexander Nemecek, Yuzhou Jiang, Erman Ayday2024 · 0 citationsarXiv
Privacy-Preserving Fingerprinting Against Collusion and Correlation Threats in Genomic Data.40212460 · Ji, Tianxi, Ayday, Erman, Yilmaz, Emre et al.2026 · 2 citationsProceedings on Privacy Enhancing Technologies. Privacy Enhancing Technologies Symposium. 2024;2024(3):659-673
Ensuring Trust in Genomics Research.38562180 · Ayday, Erman, Vaidya, Jaideep, Jiang, Xiaoqian et al.2024 · 3 citations... IEEE International Conference on Trust, Privacy and Security in Intelligent Systems and Applications : (TPS-ISA ...). IEEE International Conference on Trust, Privacy and Security in Intelligent Systems and Applications. 2023;2023:1-12
Little is Enough: Boosting Privacy by Sharing Only Hard Labels in Federated Semi-Supervised Learning2310.05696v4 · Amr Abourayya, Jens Kleesiek, Kanishka Rao et al.2023 · 7 citationsarXiv
Privacy-preserving federated genome-wide association studies via dynamic sampling.37856329 · Wang, Xinyue, Dervishi, Leonard, Li, Wentao et al.2023 · 12 citationsBioinformatics (Oxford, England). 2023;39(10)
Robust Fingerprint of Location Trajectories Under Differential Privacy.37622059 · Jiang, Yuzhou, Yilmaz, Emre, Ayday, Erman2024 · 5 citationsProceedings on Privacy Enhancing Technologies. Privacy Enhancing Technologies Symposium. 2023;2023(4):5-20
Probabilistic Fingerprinting Scheme for Correlated Data.41426237 · Yilmaz, Emre, Ayday, Erman2025 · 2 citationsData and applications security and privacy XXXVII : 37th Annual IFIP WG 11.3 Conference, DBSec 2023, Sophia-Antipolis, France, July 19-21, 2023, Proceedings. Annual IFIP WG 11.3 Working Conference on Data and Applications Security (37th.... 2023;13942:69-90
Privacy preserving identification of population stratification for collaborative genomic research.37387172 · Dervishi, Leonard, Li, Wenbiao, Halimi, Anisa et al.2023 · 5 citationsBioinformatics (Oxford, England). 2023;39(39 Suppl 1):i168-i176
Efficient Federated Kinship Relationship Identification.37351796 · Wang, Xinyue, Dervishi, Leonard, Li, Wentao et al.2023 · 1 citationAMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 2023;2023:534-543
Facilitating Federated Genomic Data Analysis by Identifying Record Correlations while Ensuring Privacy.37128365 · Dervishi, Leonard, Wang, Xinyue, Li, Wentao et al.2023 · 12 citationsAMIA ... Annual Symposium proceedings. AMIA Symposium. 2022;2022:395-404
Tuning Privacy-Utility Tradeoff in Genomic Studies Using Selective SNP Hiding.37383349 · Alserr, Nour Almadhoun, Kale, Gulce, Mutlu, Onur et al.2023 · 3 citationsProceedings of the ... Asia-Pacific bioinformatics conference. 2023;2023
Career total: 204 works. 92 are in this corpus.Showing the 50 most recent.
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