FP
Fabio Parisi
AlgorithmsBiomarkers, TumorbioinformaticsCarcinoma, Renal CellChromatin ImmunoprecipitationEpigenesis, GeneticGene Regulatory NetworksKidney NeoplasmsBiomarkersBrain Neoplasms
On Valency
published · living versionsW_a2h87auj·v1 · currentpublished
Blind Noise Equalization for Large Data Matrices under General Variance Profiles
with Boris Landa, Francesco Strino, Ruiqi Li, Yuval Kluger
1 version
Preprints & journals
35 papers in the corpus · 2007–2026A spatial multi-omics atlas of immunosenescence reveals germinal-center B cell dysfunction in human lymph nodes.42519544 · Farzad, Negin, Enninful, Archibald, Lu, Yao et al.2026 · 2 citationsCell press blue. 2026;1(4)
Locat: Joint enrichment and depletion testing identifies localized marker genes in single-cell transcriptomics.41993378 · Lewis, Wesley, Aizenbud, Yariv, Strino, Francesco et al.2026 · 0 citationsbioRxiv : the preprint server for biology. 2026
Human Lymph Node Cellular Senescence Atlas Reveals Age-Dependent Alteration in Germinal Center B Cell Function and Niches.41993351 · Farzad, Negin, Enninful, Archibald, Lu, Yao et al.2026 · 1 citationbioRxiv : the preprint server for biology. 2026
LMD: Cluster-Independent Multiscale Marker Identification in Single-cell RNA-seq Data.38014159 · Li, Ruiqi, Qu, Rihao, Parisi, Fabio et al.2025 · 1 citationbioRxiv : the preprint server for biology. 2024
Immune dysfunction revealed by digital spatial profiling of immuno-oncology markers in progressive stages of renal cell carcinoma and in brain metastases.37586773 · Schoenfeld, David A, Moutafi, Myrto, Martinez, Sandra et al.2023 · 21 citationsJournal for immunotherapy of cancer. 2023;11(8)
Impact of healthcare worker shift scheduling on workforce preservation during the COVID-19 pandemic.32684183 · Kluger, Dan M, Aizenbud, Yariv, Jaffe, Ariel et al.2020 · 47 citationsInfection control and hospital epidemiology. 2020;41(12):1443-1445
Methods for detecting co-mutated pathways in cancer samples to inform treatment selection10.1101/082552v1 · Jiang, T., Shaham, U., Parisi, F. et al.2016 · 0 citationsbioRxiv
Regulation of glutamine carrier proteins by RNF5 determines breast cancer response to ER stress-inducing chemotherapies.25759021 · Jeon, Young Joo, Khelifa, Sihem, Ratnikov, Boris et al.2015 · 230 citationsCancer cell. 2015;27(3):354-69
MET Expression in Primary and Metastatic Clear Cell Renal Cell Carcinoma: Implications of Correlative Biomarker Assessment to MET Pathway Inhibitors.26448928 · Shuch, Brian, Falbo, Ryan, Parisi, Fabio et al.2016 · 8 citationsBioMed research international. 2015;2015:192406
Preanalytical variables and phosphoepitope expression in FFPE tissue: quantitative epitope assessment after variable cold ischemic time.25418580 · Vassilakopoulou, Maria, Parisi, Fabio, Siddiqui, Summar et al.2015 · 57 citationsLaboratory investigation; a journal of technical methods and pathology. 2015;95(3):334-41
PLEKHA5 as a Biomarker and Potential Mediator of Melanoma Brain Metastasis.25316811 · Jilaveanu, Lucia B, Parisi, Fabio, Barr, Meaghan L et al.2016 · 87 citationsClinical cancer research : an official journal of the American Association for Cancer Research. 2015;21(9):2138-47
NY-ESO-1 as a potential immunotherapeutic target in renal cell carcinoma.24970819 · Giesen, Eva, Jilaveanu, Lucia B, Parisi, Fabio et al.2015 · 9 citationsOncotarget. 2014;5(14):5209-17
Interactions with RNA direct the Polycomb group protein SCML2 to chromatin where it represses target genes.24986859 · Bonasio, Roberto, Lecona, Emilio, Narendra, Varun et al.2015 · 53 citationseLife. 2014;3:e02637
Oct-1 regulates IL-17 expression by directing interchromosomal associations in conjunction with CTCF in T cells.24613343 · Kim, Lark Kyun, Esplugues, Enric, Zorca, Cornelia E et al.2014 · 47 citationsMolecular cell. 2014;54(1):56-66
A tissue quality index: an intrinsic control for measurement of effects of preanalytical variables on FFPE tissue.24535259 · Neumeister, Veronique M, Parisi, Fabio, England, Allison M et al.2014 · 57 citationsLaboratory investigation; a journal of technical methods and pathology. 2014;94(4):467-74
Ranking and combining multiple predictors without labeled data.24474744 · Parisi, Fabio, Strino, Francesco, Nadler, Boaz et al.2014 · 119 citationsProceedings of the National Academy of Sciences of the United States of America. 2014;111(4):1253-8
TrAp: a tree approach for fingerprinting subclonal tumor composition.23892400 · Strino, Francesco, Parisi, Fabio, Micsinai, Mariann et al.2013 · 125 citationsNucleic acids research. 2013;41(17):e165
Arpeggio: harmonic compression of ChIP-seq data reveals protein-chromatin interaction signatures.23873955 · Stanton, Kelly Patrick, Parisi, Fabio, Strino, Francesco et al.2013 · 7 citationsNucleic acids research. 2013;41(16):e161
Expression of drug targets in primary and matched metastatic renal cell carcinoma tumors.23374878 · Aziz, Saadia A, Sznol, Joshua A, Adeniran, Adebowale et al.2013 · 18 citationsBMC clinical pathology. 2013;13:3
Integrated analysis of tumor samples sheds light on tumor heterogeneity.23012583 · Parisi, Fabio, Micsinai, Mariann, Strino, Francesco et al.2013 · 23 citationsThe Yale journal of biology and medicine. 2012;85(3):347-61
Close proximity to Igh is a contributing factor to AID-mediated translocations.22864115 · Rocha, Pedro P, Micsinai, Mariann, Kim, JungHyun Rachel et al.2012 · 63 citationsMolecular cell. 2012;47(6):873-85
PCGF homologs, CBX proteins, and RYBP define functionally distinct PRC1 family complexes.22325352 · Gao, Zhonghua, Zhang, Jin, Bonasio, Roberto et al.2012 · 850 citationsMolecular cell. 2012;45(3):344-56
Picking ChIP-seq peak detectors for analyzing chromatin modification experiments.22307239 · Micsinai, Mariann, Parisi, Fabio, Strino, Francesco et al.2012 · 66 citationsNucleic acids research. 2012;40(9):e70
Inhibition of nonsense-mediated RNA decay by the tumor microenvironment promotes tumorigenesis.21730287 · Wang, Ding, Zavadil, Jiri, Martin, Leenus et al.2011 · 169 citationsMolecular and cellular biology. 2011;31(17):3670-80
Detecting copy number status and uncovering subclonal markers in heterogeneous tumor biopsies.21569352 · Parisi, Fabio, Ariyan, Stephan, Narayan, Deepak et al.2011 · 36 citationsBMC genomics. 2011;12:230
Genome-wide remodeling of the epigenetic landscape during myogenic differentiation.21551099 · Asp, Patrik, Blum, Roy, Vethantham, Vasupradha et al.2011 · 312 citationsProceedings of the National Academy of Sciences of the United States of America. 2011;108(22):E149-58
RUNX transcription factor-mediated association of Cd4 and Cd8 enables coordinate gene regulation.21435585 · Collins, Amélie, Hewitt, Susannah L, Chaumeil, Julie et al.2011 · 36 citationsImmunity. 2011;34(3):303-14
VDA, a method of choosing a better algorithm with fewer validations.22046256 · Strino, Francesco, Parisi, Fabio, Kluger, Yuval2012 · 4 citationsPloS one. 2011;6(10):e26074
The mammalian Sin3 proteins are required for muscle development and sarcomere specification.20956564 · van Oevelen, Chris, Bowman, Christopher, Pellegrino, Jessica et al.2011 · 67 citationsMolecular and cellular biology. 2010;30(24):5686-97
PLX4032, a selective BRAF(V600E) kinase inhibitor, activates the ERK pathway and enhances cell migration and proliferation of BRAF melanoma cells.20149136 · Halaban, Ruth, Zhang, Wengeng, Bacchiocchi, Antonella et al.2010 · 326 citationsPigment cell & melanoma research. 2010;23(2):190-200
Benefits of biomarker selection and clinico-pathological covariate inclusion in breast cancer prognostic models.20809974 · Parisi, Fabio, Gonzalez, Ana M, Nadler, Yasmine et al.2013 · 20 citationsBreast cancer research : BCR. 2010;12(5):R66
Tumour response and secondary resectability of colorectal liver metastases following neoadjuvant chemotherapy with cetuximab: the CELIM randomised phase 2 trial.19942479 · Folprecht, Gunnar, Gruenberger, Thomas, Bechstein, Wolf O et al.2010 · 963 citationsThe Lancet. Oncology. 2010;11(1):38-47
Relationship between estrogen receptor alpha location and gene induction reveals the importance of downstream sites and cofactors.19689805 · Parisi, Fabio, Sonderegger, Bernhard, Wirapati, Pratyaksha et al.2009 · 11 citationsBMC genomics. 2009;10:381
Network inference by combining biologically motivated regulatory constraints with penalized regression.19348637 · Parisi, Fabio, Koeppl, Heinz, Naef, Felix2009 · 6 citationsAnnals of the New York Academy of Sciences. 2009;1158:114-24
Identifying synergistic regulation involving c-Myc and sp1 in human tissues.17264126 · Parisi, Fabio, Wirapati, Pratyaksha, Naef, Felix2007 · 34 citationsNucleic acids research. 2007;35(4):1098-107
Career total: 69 works. 35 are in this corpus.
Profile built from the corpus for this byline.
Author records are still filling in while the Hub is in alpha. If this is your page, you'll be able to claim it soon. Spot a mistake? Tell us.