RP
Rudolf Podgornik
cond-mat.softcond-mat.stat-mechphysics.bio-phphysics.chem-phModels, Chemicalcond-mat.mes-hallq-bio.BMcond-mat.mtrl-sciModels, MolecularStatic Electricity
On Valency
published · living versionsW_4v5myjyz·v2 · currentpublished
Effects of RNA branching on the electrostatic stabilization of viruses
with Gonca Erdemci-Tandogan, Jef Wagner, Paul van der Schoot, Roya Zandi
2 versions
W_yag7rjdz·v1published
Preprints & journals
287 papers in the corpus · 1994–2026Packaged DNA genome sets the long-range electrostatic anisotropy of a virus2609.38429v1 · Jeffrey C. Everts, Anze Bozic, Rudolf Podgornik2026 · 0 citationsarXiv
The effects of ionic valency and size asymmetry on counterion adsorption.42283358 · Ben Yaakov, Or, Diamant, Haim, Podgornik, Rudolf et al.2026 · 1 citationThe Journal of chemical physics. 2026;164(22)
Effect of charge regulation on the screening properties of zwitterionic macroion solutions.41705506 · Kandari, Rashmi, Podgornik, Rudolf, Kumari, Sunita2026 · 1 citationSoft matter. 2026;22(9):2026-2037
Anomalous proteinaceous shells with octagonal local order.41430846 · Rochal, Sergei B, Roshal, Aleksey S, Konevtsova, Olga V et al.2025 · 2 citationsPhysical review. E. 2025;112(5-1):054403
Moment analysis of two-dimensional active Brownian run-and-tumble particles.41250435 · Sun, Aoran, Wei, Da, Zhang, Yiyu et al.2025 · 0 citationsPhysical review. E. 2025;112(4-1):044133
Charge Regulation Effect on Nanoparticles Interaction Mediated by Polyelectrolyte2507.00549v2 · Vijay Yadav, Prabhat Kumar Jaiswal, Rudolf Podgornik et al.2025 · 0 citationsMacromolecules 2026, 59, 11, 6398-6409
Diffusive dynamics of charge-regulated macro-ion solutions.40407743 · Zheng, Bin, Komura, Shigeyuki, Andelman, David et al.2025 · 3 citationsThe Journal of chemical physics. 2025;162(20)
Increased preference for lysine over arginine in spike proteins of SARS-CoV-2 BA.2.86 variant and its daughter lineages.40193474 · Božič, Anže, Podgornik, Rudolf2025 · 3 citationsPloS one. 2025;20(4):e0320891
Repulsive thermal van der Waals interaction in multispecies asymmetric electrolytes driven by external electric fields.40411011 · Du, Guangle, Dean, David S, Miao, Bing et al.2025 · 3 citationsPhysical review. E. 2025;111(4-1):044108
Exact moments for a run-and-tumble particle with a finite tumble time in a harmonic trap.40411032 · Sun, Aoran, Ye, Fangfu, Podgornik, Rudolf2025 · 1 citationPhysical review. E. 2025;111(4-1):044136
Controlling bulk electrostatics in electrolytes by surface polarization.40084640 · Blossey, Ralf, Podgornik, Rudolf2025 · 0 citationsThe Journal of chemical physics. 2025;162(10)
Correlation Decoupling of Casimir Interaction in an Electrolyte Driven by External Electric Fields.39714705 · Du, Guangle, Dean, David S, Miao, Bing et al.2024 · 7 citationsPhysical review letters. 2024;133(23):238002
Electrostatic interactions and structural transformations in viral shells.39380336 · Golushko, Ivan Yu, Roshal, Daria S, Konevtsova, Olga V et al.2024 · 2 citationsNanoscale. 2024;16(43):20182-20193
Sequence disorder-induced first order phase transition in confined polyelectrolytes.39356068 · Stepanyan, V, Badasyan, A, Morozov, V et al.2024 · 2 citationsThe Journal of chemical physics. 2024;161(13)
Spool-Nematic Ordering of dsDNA and dsRNA under Confinement.39423415 · Farrell, James D, Dobnikar, Jure, Podgornik, Rudolf et al.2024 · 3 citationsPhysical review letters. 2024;133(14):148101
Exact moments for a run and tumble particle in a harmonic trap with a finite tumble time2409.00578v2 · Aoran Sun, Fangfu Ye, Rudolf Podgornik2024 · 0 citationsarXiv
Erratum: Spontaneous Domain Formation in Spherically Confined Elastic Filaments [Phys. Rev. Lett. 123, 047801 (2019)].38804960 · Curk, Tine, Farrell, James Daniel, Dobnikar, Jure et al.2024 · 0 citationsPhysical review letters. 2024;132(19):199901
Changes in total charge on spike protein of SARS-CoV-2 in emerging lineages.38645718 · Božič, Anže, Podgornik, Rudolf2024 · 13 citationsBioinformatics advances. 2024;4(1):vbae053
Fabry-Pérot nanocavities controlled by Casimir forces in electrolyte solutions2403.01443v1 · Lixin Ge, Kaipeng Liu, Ke Gong et al.2024 · 11 citationsarXiv
On the nature of screening in charge-regulated macroion solutions.38180260 · Kumari, Sunita, Podgornik, Rudolf2024 · 4 citationsThe Journal of chemical physics. 2024;160(1)
Electrostatic interactions between charge regulated spherical macroions.38019363 · Ruixuan, Hu, Majee, Arghya, Dobnikar, Jure et al.2023 · 14 citationsThe European physical journal. E, Soft matter. 2023;46(11):115
Close packings of identical proteins in small spherical capsids and similar proteinaceous shells.37921635 · Rochal, Sergei B, Konevtsova, Olga V, Golushko, Ivan Yu et al.2024 · 2 citationsSoft matter. 2023;19(44):8649-8658
Impact of BA.1, BA.2, and BA.4/BA.5 Omicron mutations on therapeutic monoclonal antibodies.37871435 · Jawad, Bahaa, Adhikari, Puja, Podgornik, Rudolf et al.2023 · 14 citationsComputers in biology and medicine. 2023;167:107576
Stability of Taylor-Couette Flow with Odd Viscosity2309.09594v2 · Guangle Du, Rudolf Podgornik2023 · 0 citationsarXiv
Curvature effects in interfacial acidity of amphiphilic vesicles.37723726 · Khunpetch, Petch, Majee, Arghya, Ruixuan, Hu et al.2023 · 1 citationPhysical review. E. 2023;108(2-1):024402
Integration of Cypoviruses into polyhedrin matrix.37560430 · Konevtsova, Olga V, Golushko, Ivan Yu, Podgornik, Rudolf et al.2023 · 3 citationsNanoscale advances. 2023;5(16):4140-4148
Evolutionary changes in the number of dissociable amino acids on spike proteins and nucleoproteins of SARS-CoV-2 variants.37583936 · Božič, Anže, Podgornik, Rudolf2023 · 12 citationsVirus evolution. 2023;9(2):vead040
Interplay between finite thickness and chirality effects on the Casimir-Lifshitz torque with nematic cholesteric liquid crystals2305.13011v1 · Wijnand Broer, Rudolf Podgornik2023 · 6 citationsarXiv
Continuum theory of electrostatic-elastic coupling interactions in colloidal crystals2304.07700v2 · Hao Wu, Zhong-Can Ou-Yang, Rudolf Podgornik2023 · 4 citationsHao Wu et al., Communications in Theoretical Physics, 77 (2025) 055602
Charge Regulation of Polyelectrolyte Gels: Swelling Transition2304.01818v1 · Bin Zheng, Yael Avni, David Andelman et al.2023 · 26 citationsMacromolecules 2023, 56, 5217
A Note on Vestigial Osmotic Pressure.36984719 · Wu, Hao, Ou-Yang, Zhong-Can, Podgornik, Rudolf2023 · 4 citationsMembranes. 2023;13(3)
Towards Quantum-Chemical Level Calculations of SARS-CoV-2 Spike Protein Variants of Concern by First Principles Density Functional Theory.36831053 · Ching, Wai-Yim, Adhikari, Puja, Jawad, Bahaa et al.2023 · 10 citationsBiomedicines. 2023;11(2)
Hidden symmetry of the flavivirus protein shell and pH-controlled reconstruction of the viral surface.36426630 · Konevtsova, Olga V, Golushko, Ivan Yu, Podgornik, Rudolf et al.2022 · 3 citationsBiomaterials science. 2022;11(1):225-234
Viral RNA as a branched polymer2212.00829v2 · Domen Vaupotic, Angelo Rosa, Rudolf Podgornik et al.2022 · 2 citationsChapter 1 in: Comas-Garcia, M., Rosales-Mendoza, S. (eds) Physical Virology. Springer Series in Biophysics, vol 24. Springer, Cham (2023)
Odd viscosity-induced Hall-like transport of an active chiral fluid.36215475 · Lou, Xin, Yang, Qing, Ding, Yu et al.2022 · 50 citationsProceedings of the National Academy of Sciences of the United States of America. 2022;119(42):e2201279119
Quantum Chemical Computation of Omicron Mutations Near Cleavage Sites of the Spike Protein.36296275 · Adhikari, Puja, Jawad, Bahaa, Podgornik, Rudolf et al.2022 · 10 citationsMicroorganisms. 2022;10(10)
Packing and trimer-to-dimer protein reconstruction in icosahedral viral shells with a single type of symmetrical structural unit.36341291 · Rochal, Sergei B, Konevtsova, Olga V, Roshal, Daria S et al.2022 · 9 citationsNanoscale advances. 2022;4(21):4677-4688
Effect of Delta and Omicron Mutations on the RBD-SD1 Domain of the Spike Protein in SARS-CoV-2 and the Omicron Mutations on RBD-ACE2 Interface Complex.36077490 · Ching, Wai-Yim, Adhikari, Puja, Jawad, Bahaa et al.2022 · 16 citationsInternational journal of molecular sciences. 2022;23(17)
On the nature of screening in Voorn-Overbeek type theories.35778110 · Kumari, Sunita, Dwivedi, Shikha, Podgornik, Rudolf2022 · 12 citationsThe Journal of chemical physics. 2022;156(24):244901
Trapping Instability of an Active Particle in Steering Potential Fields2206.10223v1 · Guangle Du, Fangfu Ye, Rudolf Podgornik2022 · 3 citationsarXiv
A comprehensive continuum theory of structured liquids2206.03152v2 · Ralf Blossey, Rudolf Podgornik2022 · 13 citationsarXiv
Atomic-scale Quantum Chemical Calculation of Omicron Mutations Near Cleavage Sites of the Spike Protein10.1101/2022.06.03.494698v1 · Adhikari, P., Jawad, B., Podgornik, R. et al.2022 · 5 citationsbioRxiv
Continuum theories of structured dielectrics2206.01789v1 · Ralf Blossey, Rudolf Podgornik2022 · 14 citationsarXiv
Binding Interactions between Receptor-Binding Domain of Spike Protein and Human Angiotensin Converting Enzyme-2 in Omicron Variant.35481766 · Jawad, Bahaa, Adhikari, Puja, Podgornik, Rudolf et al.2022 · 67 citationsThe journal of physical chemistry letters. 2022;13(17):3915-3921
Curvature effects in charge-regulated lipid bilayers.35294512 · Khunpetch, Petch, Majee, Arghya, Podgornik, Rudolf2022 · 21 citationsSoft matter. 2022;18(13):2597-2610
Mutations of Omicron Variant at the Interface of the Receptor Domain Motif and Human Angiotensin-Converting Enzyme-2.35270013 · Adhikari, Puja, Jawad, Bahaa, Podgornik, Rudolf et al.2022 · 24 citationsInternational journal of molecular sciences. 2022;23(5)
Delta Variant with P681R Critical Mutation Revealed by Ultra-Large Atomic-Scale Ab Initio Simulation: Implications for the Fundamentals of Biomolecular Interactions.35336872 · Adhikari, Puja, Jawad, Bahaa, Rao, Praveen et al.2022 · 17 citationsViruses. 2022;14(3)
Binding Interactions between RBD of Spike-Protein and Human ACE2 in Omicron variant10.1101/2022.02.10.480009v1 · Jawad, B., Adhikari, P., Podgornik, R. et al.2022 · 3 citationsbioRxiv
Field theory of structured liquid dielectrics2201.13101v1 · Ralf Blossey, Rudolf Podgornik2022 · 23 citationsarXiv
Computational Design of Miniproteins as SARS-CoV-2 Therapeutic Inhibitors.35055023 · Jawad, Bahaa, Adhikari, Puja, Cheng, Kun et al.2022 · 18 citationsInternational journal of molecular sciences. 2022;23(2)
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