TM
Thierry Mora
immunologyq-bio.PEq-bio.GNcond-mat.dis-nnq-bio.NCcond-mat.stat-mechphysics.bio-phneuroscienceModels, Biologicalq-bio.QM
On Valency
published · living versionsW_6uv2jkb5·v1 · currentpublished
Thermodynamics for a network of neurons: Signatures of criticality
with Gasper Tkacik, Olivier Marre, Dario Amodei, Michael J. Berry +1
1 version
Preprints & journals
326 papers in the corpus · 2005–2026Paraplume: A fast and accurate antibody paratope prediction method provides insights into repertoire-scale binding dynamics.41706817 · Athènes, Gabriel, Woolfe, Adam, Mora, Thierry et al.2026 · 0 citationsPLoS computational biology. 2026;22(2):e1013981
Divergent B-cell repertoire remodelling by mRNA, DNA and live attenuated vaccines in fish.40707442 · Porter, Dean, Collins, Catherine, Mazzolini, Andrea et al.2026 · 7 citationsNPJ vaccines. 2025;10(1):166
Uneven TCR chain pairing constraints govern epitope recognition.42691161 · Minervina, Anastasia A, Pogorelyy, Mikhail V, Mayer-Blackwell, Koshlan et al.2026 · 0 citationsScience (New York, N.Y.). 2026;393(6815):eadx3863
Neutralization titers reveal the structure of polyclonal antibody responses2604.11451v2 · Henry Alston, Thierry Mora, Aleksandra M. Walczak2026 · 0 citationsarXiv
Theoretical limits for sensing through phase separation.41650233 · Alston, Henry, Rouches, Mason, Murugan, Arvind et al.2026 · 1 citationProceedings of the National Academy of Sciences of the United States of America. 2026;123(6):e2520040123
Dynamics of memory B cells and plasmablasts in healthy individuals.41609680 · Mazzolini, Andrea, Walczak, Aleksandra M, Mora, Thierry2026 · 3 citationsProceedings of the National Academy of Sciences of the United States of America. 2026;123(5):e2528141123
Surveying the adaptive landscapes of 10,000 antibodies2606.21351v1 · Daniel PGH Wong, Aleksandra M. Walczak, Thierry Mora2026 · 0 citationsarXiv
Flocking and turning: a new model for self-organized collective motion1403.1202v2 · Andrea Cavagna, Lorenzo Del Castello, Irene Giardina et al.2014 · 203 citationsJ.Stat.Phys. 158 (2015) 601-627
Unbiased identification of responding T cell clones from longitudinal repertoire sequencing with CloneSearch10.64898/2026.05.29.728700v1 · Milighetti, M., Sethna, Z., Martis, S. et al.2026 · 0 citationsbioRxiv
Inferring resource competition in microbial communities from time series.39867430 · Chen, Xiaowen, Crocker, Kyle, Kuehn, Seppe et al.2026 · 0 citationsArXiv. 2025
Inferring Resource Competition in Microbial Communities from Time Series.42052147 · Chen, Xiaowen, Crocker, Kyle, Kuehn, Seppe et al.2026 · 4 citationsPRX life. 2025;3(2)
Learning the statistics and landscape of somatic mutation-induced insertions and deletions in antibodies2112.07953v2 · Cosimo Lupo, Natanael Spisak, Aleksandra M. Walczak et al.2021 · 19 citationsPLoS Computational Biology 18, e1010167 (2022)
Correction: Buckling of swelling gels.41335280 · Mora, Thierry, Boudaoud, Arezki2026 · 0 citationsThe European physical journal. E, Soft matter. 2025;48(10-12):71
Modeling Protein Evolution via Generative Inference From Monte Carlo Chains to Population Genetics2602.08641v1 · Leonardo Di Bari, Thierry Mora, Andrea Pagnani et al.2026 · 1 citationarXiv
Optimal sensing through phase separation.40740517 · Alston, Henry, Rouches, Mason, Murugan, Arvind et al.2026 · 0 citationsArXiv. 2025
Modeling Protein Evolution via Generative Inference From Monte Carlo Chains to Population Genetics10.64898/2026.02.09.704757v1 · Di Bari, L., Mora, T., Pagnani, A. et al.2026 · 1 citationbioRxiv
Noradrenaline prolongs the state of motor arrest via cerebrospinal fluid signaling10.64898/2026.02.06.704024v1 · Dhanasekar, M., Fidelin, K., Greco, M. et al.2026 · 0 citationsbioRxiv
Learning evolutionary parameters from genealogies using allelic trees.40505111 · Aragon, Antoine, Lambert, Amaury, Mora, Thierry et al.2026 · 0 citationsGenetics. 2026;232(1)
Dynamics of memory B cells and plasmablasts in healthy individuals2510.02812v2 · Andrea Mazzolini, Aleksandra M. Walczak, Thierry Mora2025 · 3 citationsarXiv
Dynamics of memory B cells and plasmablasts in healthy individuals10.1101/2025.10.03.680203v2 · Mazzolini, A., Walczak, A., Mora, T.2025 · 3 citationsbioRxiv
Theoretical limits for sensing through phase separation2507.19021v2 · Henry Alston, Mason Rouches, Arvind Murugan et al.2025 · 1 citationarXiv
Energy-based generative models for monoclonal antibodies.41289261 · Pereira, Paul, Minoux, Hervé, Walczak, Aleksandra M et al.2025 · 1 citationmAbs. 2025;17(1):2584935
Profiling of HIV-1 elite neutralizer cohort reveals a CD4bs bnAb for HIV-1 prevention and therapy.41053396 · Gieselmann, Lutz, DeLaitsch, Andrew T, Rohde, Malena et al.2025 · 8 citationsNature immunology. 2025;26(11):2016-2029
Coarse-graining reveals collective predictive information in a sensory population10.1101/2025.10.18.683195v1 · Kline, A. G., Koch-Janusz, M., Walczak, A. M. et al.2025 · 0 citationsbioRxiv
Fast decisions with biophysically constrained gene promoter architectures2507.03720v2 · Tarek Tohme, Massimo Vergassola, Thierry Mora et al.2025 · 1 citationarXiv
Paraplume: A fast and accurate paratope prediction method provides insights into repertoire-scale binding dynamics2510.05626v1 · Gabriel Athenes, Adam Woolfe, Thierry Mora et al.2025 · 0 citationsarXiv
Paraplume: A fast and accurate paratope prediction method provides insights into repertoire-scale binding dynamics10.1101/2025.10.04.680432v1 · Athenes, G., Woolfe, A., Mora, T. et al.2025 · 0 citationsbioRxiv
Profiling a large HIV-1 elite neutralizer cohort reveals remarkable CD4bs bNAb for HIV-1 prevention and therapy10.1101/2025.08.27.672638v1 · Gieselmann, L., DeLaitsch, A. T., Rohde, M. et al.2025 · 1 citationbioRxiv
Strong, but not weak, noise correlations are beneficial for population coding2406.18439v3 · Gabriel Mahuas, Thomas Buffet, Olivier Marre et al.2024 · 4 citationsarXiv
Integrating computational detection and experimental validation for rapid GFRAL-specific antibody discovery2506.01995v1 · Maria Francesca Abbate, Pierre Toxe, Nicolas Maestrali et al.2025 · 0 citationsarXiv
Local equilibrium in bird flocks.27917230 · Mora, Thierry, Walczak, Aleksandra M, Castello, Lorenzo Del et al.2025 · 122 citationsNature physics. 2016;12(12):1153-1157
Learning via mechanosensitivity and activity in cytoskeletal networks.40313666 · Banerjee, Deb S, Falk, Martin J, Gardel, Margaret L et al.2025 · 0 citationsArXiv. 2025
Inferring resource competition in microbial communities from time series2501.04520v3 · Xiaowen Chen, Kyle Crocker, Seppe Kuehn et al.2025 · 6 citationsarXiv
Inferring resource competition in microbial communities from time series10.1101/2025.01.08.631910v2 · Chen, X., Crocker, K., Kuehn, S. et al.2025 · 6 citationsbioRxiv
Learning predictive signatures of HLA type from T-cell repertoires.39761303 · Ruiz Ortega, María, Pogorelyy, Mikhail V, Minervina, Anastasia A et al.2025 · 20 citationsPLoS computational biology. 2025;21(1):e1012724
Learning via mechanosensitivity and activity in cytoskeletal networks2504.15107v1 · Deb S. Banerjee, Martin J. Falk, Margaret L Gardel et al.2025 · 1 citationarXiv
Modeling collective behavior in groups of mice housed under semi-naturalistic conditions.40261271 · Chen, Xiaowen, Winiarksi, Maciej, Puścian, Alicja et al.2025 · 0 citationseLife. 2025;13
Modelling collective behavior in groups of mice housed under semi-naturalistic conditions10.1101/2023.07.26.550619v4 · Chen, X., Winiarski, M., Puscian, A. et al.2023 · 6 citationsbioRxiv
Continuous replenishment of the dysfunctional CD8 T cell axis is associated with response to chemoimmunotherapy in advanced breast cancer.39983715 · Metoikidou, Christina, Karnaukhov, Vadim, Boeckx, Bram et al.2025 · 5 citationsCell reports. Medicine. 2025;6(3):101973
Learning evolutionary parameters from genealogies using allelic trees10.1101/2025.03.03.641273v1 · Aragon, A., Lambert, A., Mora, T. et al.2025 · 0 citationsbioRxiv
Thermodynamics for a network of neurons: Signatures of criticality1407.5946v1 · Gasper Tkacik, Thierry Mora, Olivier Marre et al.2014 · 23 citationsProceedings of the National Academy of Sciences (USA)112, 11508-11513 (2015)on Valency
Local and Global Variability in Developing Human T-Cell Repertoires.39582620 · Isacchini, Giulio, Quiniou, Valentin, Barennes, Pierre et al.2024 · 7 citationsPRX life. 2024;2(1)
Energy-based generative models for monoclonal antibodies2411.13390v1 · Paul Pereira, Herv'e Minoux, Aleksandra M. Walczak et al.2024 · 1 citationarXiv
Single cells can resolve graded stimuli10.1101/2024.10.29.620645v1 · Kramar, M., Hahn, L., Walczak, A. M. et al.2024 · 3 citationsbioRxiv
Single cells can resolve graded stimuli2410.22571v1 · Mirna Kramar, Lauritz Hahn, Aleksandra M Walczak et al.2024 · 3 citationsarXiv
How host mobility patterns shape antigenic escape during viral-immune co-evolution2410.17418v1 · Natalie Blot, Caelan Brooks, Daniel W. Swartz et al.2024 · 0 citationsarXiv
Combining mutation and recombination statistics to infer clonal families in antibody repertoires.39120133 · Spisak, Natanael, Athènes, Gabriel, Dupic, Thomas et al.2024 · 17 citationseLife. 2024;13
Preschool-age children maintain a distinct memory CD4+ T cell and memory B cell response after SARS-CoV-2 infection.39292802 · Manfroi, Benoît, Cuc, Bui Thi, Sokal, Aurélien et al.2024 · 11 citationsScience translational medicine. 2024;16(765):eadl1997
Computational detection of antigen-specific B cell receptors following immunization.39163333 · Abbate, Maria Francesca, Dupic, Thomas, Vigne, Emmanuelle et al.2024 · 8 citationsProceedings of the National Academy of Sciences of the United States of America. 2024;121(35):e2401058121
Strong, but not weak, noise correlations are beneficial for population coding10.1101/2024.06.26.600826v1 · Mahuas, G., Buffet, T., Marre, O. et al.2024 · 4 citationsbioRxiv
Career total: 343 works. 326 are in this corpus.Showing the 50 most recent.
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