OR
Olaf Ronneberger
Algorithmscs.CVDeep Learningcs.LGeess.IVmachine learningModels, Molecularstat.MLZebrafishartificial intelligence
On Valency
published · living versionsW_epf6zj82·v1 · currentpublished
U-Net: Convolutional Networks for Biomedical Image Segmentation
with Philipp Fischer, Thomas Brox
1 version
W_z8wecm87·v1published
Preprints & journals
63 papers in the corpus · 2005–2024Addendum: Accurate structure prediction of biomolecular interactions with AlphaFold 3.39604737 · Abramson, Josh, Adler, Jonas, Dunger, Jack et al.2025 · 348 citationsNature. 2024;636(8042):E4
Author Correction: Microridge-like structures anchor motile cilia.39313506 · Yasunaga, Takayuki, Wiegel, Johannes, Bergen, Max D et al.2024 · 0 citationsNature communications. 2024;15(1):8252
Accurate structure prediction of biomolecular interactions with AlphaFold 3.38718835 · Abramson, Josh, Adler, Jonas, Dunger, Jack et al.2024 · 15,549 citationsNature. 2024;630(8016):493-500
The Medical Segmentation Decathlon.35840566 · Antonelli, Michela, Reinke, Annika, Bakas, Spyridon et al.2022 · 1,372 citationsNature communications. 2022;13(1):4128
Microridge-like structures anchor motile cilia.35440631 · Yasunaga, Takayuki, Wiegel, Johannes, Bergen, Max D et al.2022 · 26 citationsNature communications. 2022;13(1):2056
Applying and improving AlphaFold at CASP14.34599769 · Jumper, John, Evans, Richard, Pritzel, Alexander et al.2022 · 397 citationsProteins. 2021;89(12):1711-1721
Deep learning is widely applicable to phenotyping embryonic development and disease.34739029 · Naert, Thomas, Çiçek, Özgün, Ogar, Paulina et al.2021 · 33 citationsDevelopment (Cambridge, England). 2021;148(21)
Protein complex prediction with AlphaFold-Multimer10.1101/2021.10.04.463034v2 · Evans, R., O'Neill, M., Pritzel, A. et al.2021 · 3,788 citationsbioRxiv
Highly accurate protein structure prediction for the human proteome.34293799 · Tunyasuvunakool, Kathryn, Adler, Jonas, Wu, Zachary et al.2022 · 3,013 citationsNature. 2021;596(7873):590-596
Highly accurate protein structure prediction with AlphaFold.34265844 · Jumper, John, Evans, Richard, Pritzel, Alexander et al.2022 · 43,443 citationsNature. 2021;596(7873):583-589
Clinically Applicable Segmentation of Head and Neck Anatomy for Radiotherapy: Deep Learning Algorithm Development and Validation Study.34255661 · Nikolov, Stanislav, Blackwell, Sam, Zverovitch, Alexei et al.2021 · 367 citationsJournal of medical Internet research. 2021;23(7):e26151
Inferring a Continuous Distribution of Atom Coordinates from Cryo-EM Images using VAEs2106.14108v1 · Dan Rosenbaum, Marta Garnelo, Michal Zielinski et al.2021 · 30 citationsarXiv
Contrastive Training for Improved Out-of-Distribution Detection2007.05566v1 · Jim Winkens, Rudy Bunel, Abhijit Guha Roy et al.2020 · 122 citationsarXiv
A Hierarchical Probabilistic U-Net for Modeling Multi-Scale Ambiguities1905.13077v1 · Simon A. A. Kohl, Bernardino Romera-Paredes, Klaus H. Maier-Hein et al.2019 · 58 citationsarXiv
Author Correction: U-Net: deep learning for cell counting, detection, and morphometry.30804552 · Falk, Thorsten, Mai, Dominic, Bensch, Robert et al.2019 · 41 citationsNature methods. 2019;16(4):351
A large annotated medical image dataset for the development and evaluation of segmentation algorithms1902.09063v1 · Amber L. Simpson, Michela Antonelli, Spyridon Bakas et al.2019 · 684 citationsarXivon Valency
U-Net: deep learning for cell counting, detection, and morphometry.30559429 · Falk, Thorsten, Mai, Dominic, Bensch, Robert et al.2019 · 1,910 citationsNature methods. 2019;16(1):67-70
Deep learning to achieve clinically applicable segmentation of head and neck anatomy for radiotherapy1809.04430v3 · Stanislav Nikolov, Sam Blackwell, Alexei Zverovitch et al.2018 · 239 citationsarXiv
Clinically applicable deep learning for diagnosis and referral in retinal disease.30104768 · De Fauw, Jeffrey, Ledsam, Joseph R, Romera-Paredes, Bernardino et al.2019 · 2,632 citationsNature medicine. 2018;24(9):1342-1350
Light dynamically regulates growth rate and cellular organisation of the Arabidopsis root meristem.10.1101/353987v1 · Blein, T., Duerr, J., Pasternak, T. et al.2018 · 6 citationsbioRxiv
A Probabilistic U-Net for Segmentation of Ambiguous Images1806.05034v4 · Simon A. A. Kohl, Bernardino Romera-Paredes, Clemens Meyer et al.2018 · 439 citationsarXiv
Data-Driven Modeling of Intracellular Auxin Fluxes Indicates a Dominant Role of the ER in Controlling Nuclear Auxin Uptake.29539430 · Middleton, Alistair M, Dal Bosco, Cristina, Chlap, Phillip et al.2019 · 33 citationsCell reports. 2018;22(11):3044-3057
An objective comparison of cell-tracking algorithms.29083403 · Ulman, Vladimír, Maška, Martin, Magnusson, Klas E G et al.2017 · 571 citationsNature methods. 2017;14(12):1141-1152
A 3D digital atlas of the Nicotiana tabacum root tip and its use to investigate changes in the root apical meristem induced by the Agrobacterium 6b oncogene.28670824 · Pasternak, Taras, Haser, Thomas, Falk, Thorsten et al.2018 · 26 citationsThe Plant journal : for cell and molecular biology. 2017;92(1):31-42
A new fate mapping system reveals context-dependent random or clonal expansion of microglia.28414331 · Tay, Tuan Leng, Mai, Dominic, Dautzenberg, Jana et al.2017 · 597 citationsNature neuroscience. 2017;20(6):793-803
Gland segmentation in colon histology images: The glas challenge contest.27614792 · Sirinukunwattana, Korsuk, Pluim, Josien P W, Chen, Hao et al.2018 · 994 citationsMedical image analysis. 2017;35:489-502
Automated analysis of retinal imaging using machine learning techniques for computer vision.27830057 · De Fauw, Jeffrey, Keane, Pearse, Tomasev, Nenad et al.2025 · 18 citationsF1000Research. 2016;5:1573
3D U-Net: Learning Dense Volumetric Segmentation from Sparse Annotation1606.06650v1 · Ozgun Cicek, Ahmed Abdulkadir, Soeren S. Lienkamp et al.2016 · 7,940 citationsarXiv
A benchmark for comparison of dental radiography analysis algorithms.26974042 · Wang, Ching-Wei, Huang, Cheng-Ta, Lee, Jia-Hong et al.2016 · 401 citationsMedical image analysis. 2016;31:63-76
The polarity protein Inturned links NPHP4 to Daam1 to control the subapical actin network in multiciliated cells.26644512 · Yasunaga, Takayuki, Hoff, Sylvia, Schell, Christoph et al.2016 · 57 citationsThe Journal of cell biology. 2015;211(5):963-73
Spontaneous and electric field-controlled front-rear polarization of human keratinocytes.26424799 · Saltukoglu, Deniz, Grünewald, Julian, Strohmeyer, Nico et al.2016 · 26 citationsMolecular biology of the cell. 2015;26(24):4373-86
B cell antigen receptors of the IgM and IgD classes are clustered in different protein islands that are altered during B cell activation.26373673 · Maity, Palash Chandra, Blount, Amy, Jumaa, Hassan et al.2016 · 124 citationsScience signaling. 2015;8(394):ra93
Amotl2a interacts with the Hippo effector Yap1 and the Wnt/β-catenin effector Lef1 to control tissue size in zebrafish.26335201 · Agarwala, Sobhika, Duquesne, Sandra, Liu, Kun et al.2016 · 50 citationseLife. 2015;4:e08201
U-Net: Convolutional Networks for Biomedical Image Segmentation1505.04597v1 · Olaf Ronneberger, Philipp Fischer, Thomas Brox2015 · 99,270 citationsarXivon Valency
The Rac1 regulator ELMO controls basal body migration and docking in multiciliated cells through interaction with Ezrin.25852201 · Epting, Daniel, Slanchev, Krasimir, Boehlke, Christopher et al.2015 · 52 citationsDevelopment (Cambridge, England). 2015;142(8):1553
Standardized evaluation of algorithms for computer-aided diagnosis of dementia based on structural MRI: the CADDementia challenge.25652394 · Bron, Esther E, Smits, Marion, van der Flier, Wiesje M et al.2016 · 352 citationsNeuroImage. 2015;111:562-79
The Rac1 regulator ELMO controls basal body migration and docking in multiciliated cells through interaction with Ezrin.25516973 · Epting, Daniel, Slanchev, Krasimir, Boehlke, Christopher et al.2015 · 58 citationsDevelopment (Cambridge, England). 2015;142(1):174-84
Validation of fluorescence molecular tomography/micro-CT multimodal imaging in vivo in rats.24163020 · Vonwil, Daniel, Christensen, Jon, Fischer, Sascha et al.2015 · 25 citationsMolecular imaging and biology. 2014;16(3):350-61
Correction of inter-scanner and within-subject variance in structural MRI based automated diagnosing.24791746 · Kostro, Daniel, Abdulkadir, Ahmed, Durr, Alexandra et al.2015 · 42 citationsNeuroImage. 2014;98:405-15
The iRoCS Toolbox--3D analysis of the plant root apical meristem at cellular resolution.24417645 · Schmidt, Thorsten, Pasternak, Taras, Liu, Kun et al.2015 · 75 citationsThe Plant journal : for cell and molecular biology. 2014;77(5):806-14
Variational attenuation correction in two-view confocal microscopy.24350574 · Schmidt, Thorsten, Dürr, Jasmin, Keuper, Margret et al.2014 · 5 citationsBMC bioinformatics. 2013;14:366
Automated processing of zebrafish imaging data: a survey.23758125 · Mikut, Ralf, Dickmeis, Thomas, Driever, Wolfgang et al.2014 · 82 citationsZebrafish. 2013;10(3):401-21
Non-directional radial intercalation dominates deep cell behavior during zebrafish epiboly.23951411 · Bensch, Robert, Song, Sungmin, Ronneberger, Olaf et al.2013 · 28 citationsBiology open. 2013;2(8):845-54
Functional and structural MRI biomarkers to detect pre-clinical neurodegeneration.22742852 · Abdulkadir, Ahmed, Ronneberger, Olaf, Wolf, Robert Christian et al.2013 · 16 citationsCurrent Alzheimer research. 2013;10(2):125-34
Vertebrate kidney tubules elongate using a planar cell polarity-dependent, rosette-based mechanism of convergent extension.23143599 · Lienkamp, Soeren S, Liu, Kun, Karner, Courtney M et al.2013 · 238 citationsNature genetics. 2012;44(12):1382-7
Shroom3 is required downstream of FGF signalling to mediate proneuromast assembly in zebrafish.23136387 · Ernst, Sandra, Liu, Kun, Agarwala, Sobhika et al.2013 · 77 citationsDevelopment (Cambridge, England). 2012;139(24):4571-81
Fast rotation invariant 3D feature computation utilizing efficient local neighborhood operators.22201055 · Skibbe, Henrik, Reisert, Marco, Schmidt, Thorsten et al.2012 · 32 citationsIEEE transactions on pattern analysis and machine intelligence. 2012;34(8):1563-75
Influence of cell-to-cell variability on spatial pattern formation.23039695 · Greese, B, Wester, K, Bensch, R et al.2013 · 14 citationsIET systems biology. 2012;6(4):143-53
ViBE-Z: a framework for 3D virtual colocalization analysis in zebrafish larval brains.22706672 · Ronneberger, Olaf, Liu, Kun, Rath, Meta et al.2012 · 139 citationsNature methods. 2012;9(7):735-42
Multiview deblurring for 3-D images from light-sheet-based fluorescence microscopy.22203719 · Temerinac-Ott, Maja, Ronneberger, Olaf, Ochs, Peter et al.2012 · 52 citationsIEEE transactions on image processing : a publication of the IEEE Signal Processing Society. 2012;21(4):1863-73
Career total: 172 works. 63 are in this corpus.Showing the 50 most recent.
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