FP
Francisco Pina-Martins
Adaptation, BiologicalGenetic Variationlocal adaptationPhylogenyQuercusRAD sequencingSoftwareWest MediterraneanAccessibilityAccessible
On Valency
published · living versionsW_26xzgw86·v1 · currentpublished
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
with Keith R. Bradnam, Joseph N. Fass, Anton Alexandrov, Paul Baranay +86
1 version
Preprints & journals
26 papers in the corpus · 2008–2026Who packed the drugs? Improved DNA recovery and its impact on findings given activity-level propositions.42092207 · Faria, Sara, Gill, Peter, Ribeiro, Ana Clara et al.2026 · 0 citationsForensic science international. Genetics. 2026;84:103516
FAIR Omics Data Management: Overview, Challenges, and Best Practices.42071145 · Pina-Martins, Francisco, Poiares-Oliveira, Gil, Oliveira, Jorge et al.2026 · 0 citationsAdvances in experimental medicine and biology. 2026;1504:187-204
From Food to Humans: The Toxicological Effects of Alternaria Mycotoxins in the Liver and Colon.41440752 · Vilela, Rita Sofia, Pina-Martins, Francisco, Ventura, Célia2025 · 7 citationsJournal of xenobiotics. 2025;15(6)
Morphological and genetic polymorphisms in Rhipicephalus sanguineus (Latreille 1806) from the Iberian Peninsula.40965649 · Rosa, F, Caeiro, M F, Carvalho, M et al.2025 · 0 citationsParasitology research. 2025;124(9):105
Prediction of Antibiotic Resistance Genes in Cyanobacterial Strains by Whole Genome Sequencing.40572139 · Balata, Duarte, Rosado, Tânia, Pina-Martins, Francisco et al.2025 · 1 citationMicroorganisms. 2025;13(6)
Freshwater fish community assessment using eDNA metabarcoding vs. capture-based methods: Differences in efficiency and resolution coupled to habitat and ecology.40020855 · Curto, Manuel, Batista, Sofia, Santos, Carlos D et al.2025 · 20 citationsEnvironmental research. 2025;274:121238
Building a Portuguese coalition for biodiversity genomics.39289491 · Marques, João P, Alves, Paulo C, Amorim, Isabel R et al.2024 · 5 citationsnpj biodiversity. 2024;3(1):27
Island hitchhikers: pathogen agents of Madeira and Azores ticks.38967653 · Rosa, Fernanda, Silva, Carla, Rodrigues, Ricardo et al.2024 · 4 citationsParasitology research. 2024;123(7):261
No evidence of inbreeding depression despite a historical severe bottleneck in the endangered Bermuda petrel (Pterodroma cahow).37162284 · Afonso, Rita O, Pina-Martins, Francisco, Friesen, Vicki et al.2023 · 5 citationsThe Journal of heredity. 2023;114(5):459-469
Correction: A first look at sea-lavenders genomics - can genome wide SNP information tip the scales of controversy in the Limonium vulgare species complex?36737677 · Pina-Martins, Francisco, Caperta, Ana D, Conceicao, Sofia I R et al.2023 · 1 citationBMC plant biology. 2023;23(1):76
A first look at sea-lavenders genomics - can genome wide SNP information tip the scales of controversy in the Limonium vulgare species complex?36642719 · Pina-Martins, Francisco, Caperta, Ana D, Conceição, Sofia I R et al.2023 · 7 citationsBMC plant biology. 2023;23(1):34
Repeated evolution of blanched coloration in a lizard across independent white-sand habitats.36506826 · Laurentino, Telma G, Dittmer, Drew E, Grundler, Maggie R et al.2023 · 6 citationsEcology and evolution. 2022;12(12):e9555
Population structure in Quercus suber L. revealed by nuclear microsatellite markers.35729909 · Sousa, Filipe, Costa, Joana, Ribeiro, Carla et al.2023 · 16 citationsPeerJ. 2022;10:e13565
Population structure, adaptation and divergence of the meadow spittlebug, Philaenus spumarius (Hemiptera, Aphrophoridae), revealed by genomic and morphological data.34131518 · Seabra, Sofia G, Rodrigues, Ana S B, Silva, Sara E et al.2024 · 11 citationsPeerJ. 2021;9:e11425
Using gradient Forest to predict climate response and adaptation in Cork oak.33484040 · Vanhove, Mathieu, Pina-Martins, Francisco, Coelho, Ana Cristina et al.2021 · 56 citationsJournal of evolutionary biology. 2021;34(6):910-923
evALLution: making basic evolution concepts accessible to people with visual impairment through a multisensory tree of life.33786157 · Laurentino, Telma G, Xavier, Marisa, Ronco, Fabrizia et al.2022 · 6 citationsEvolution. 2021;14(1):5
Corrigendum to "Molecular phylogeny and DNA barcoding in the meadow-spittlebug Philaenus spumarius (Hemiptera, Cercopidae) and its related species" [Mol. Phylogenet. Evol. 56 (2010) 462-467].32781419 · Seabra, S G, Pina-Martins, F, Marabuto, E et al.2020 · 2 citationsMolecular phylogenetics and evolution. 2020;152:106888
Correction to: Assessing genotype-phenotype associations in three dorsal colour morphs in the meadow spittlebug Philaenus spumarius (L.) (Hemiptera: Aphrophoridae) using genomic and transcriptomic resources.32209049 · Rodrigues, Ana S B, Silva, Sara E, Pina-Martins, Francisco et al.2020 · 0 citationsBMC genetics. 2020;21(1):36
Genomic signatures of introgression between commercial and native bumblebees, Bombus terrestris, in western Iberian Peninsula-Implications for conservation and trade regulation.30976302 · Seabra, Sofia G, Silva, Sara E, Nunes, Vera L et al.2023 · 36 citationsEvolutionary applications. 2019;12(4):679-691
New insights into adaptation and population structure of cork oak using genotyping by sequencing.30358018 · Pina-Martins, Francisco, Baptista, João, Pappas, Georgios et al.2019 · 95 citationsGlobal change biology. 2019;25(1):337-350
Structure_threader: An improved method for automation and parallelization of programs structure, fastStructure and MavericK on multicore CPU systems.28776963 · Pina-Martins, Francisco, Silva, Diogo N, Fino, Joana et al.2018 · 130 citationsMolecular ecology resources. 2017;17(6):e268-e274
Assessing genotype-phenotype associations in three dorsal colour morphs in the meadow spittlebug Philaenus spumarius (L.) (Hemiptera: Aphrophoridae) using genomic and transcriptomic resources.27846816 · Rodrigues, Ana S B, Silva, Sara E, Pina-Martins, Francisco et al.2017 · 21 citationsBMC genetics. 2016;17(1):144
4Pipe4--A 454 data analysis pipeline for SNP detection in datasets with no reference sequence or strain information.26787189 · Pina-Martins, Francisco, Vieira, Bruno M, Seabra, Sofia G et al.2016 · 5 citationsBMC bioinformatics. 2016;17:41
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species.23870653 · Bradnam, Keith R, Fass, Joseph N, Alexandrov, Anton et al.2014 · 671 citationsGigaScience. 2013;2(1):10
Molecular phylogeny and DNA barcoding in the meadow-spittlebug Philaenus spumarius (Hemiptera, Cercopidae) and its related species.20307671 · Seabra, S G, Pina-Martins, F, Marabuto, E et al.2010 · 27 citationsMolecular phylogenetics and evolution. 2010;56(1):462-7
concatenator: sequence data matrices handling made easy.21586013 · Pina-Martins, F, Paulo, O S2013 · 53 citationsMolecular ecology resources. 2008;8(6):1254-5
Career total: 377 works. 26 are in this corpus.
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