SY
Shuangye Yin
cond-mat.str-elModels, ChemicalComputer SimulationDrug DiscoveryEvolution, MolecularGenetic SpeciationGenetic VariationGenome, BacterialGenome, HumanGenomic Library
On Valency
published · living versionsW_26xzgw86·v1 · currentpublished
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
with Keith R. Bradnam, Joseph N. Fass, Anton Alexandrov, Paul Baranay +86
1 version
Preprints & journals
25 papers in the corpus · 2001–2014Comprehensive variation discovery in single human genomes.25326702 · Weisenfeld, Neil I, Yin, Shuangye, Sharpe, Ted et al.2015 · 199 citationsNature genetics. 2014;46(12):1350-5
The genomic substrate for adaptive radiation in African cichlid fish.25186727 · Brawand, David, Wagner, Catherine E, Li, Yang I et al.2014 · 987 citationsNature. 2014;513(7518):375-381
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species.23870653 · Bradnam, Keith R, Fass, Joseph N, Alexandrov, Anton et al.2014 · 671 citationsGigaScience. 2013;2(1):10
Finished bacterial genomes from shotgun sequence data.22829535 · Ribeiro, Filipe J, Przybylski, Dariusz, Yin, Shuangye et al.2013 · 211 citationsGenome research. 2012;22(11):2270-7
Discrete molecular dynamics distinguishes nativelike binding poses from decoys in difficult targets.22225808 · Proctor, Elizabeth A, Yin, Shuangye, Tropsha, Alexander et al.2012 · 31 citationsBiophysical journal. 2012;102(1):144-51
Cheminformatics meets molecular mechanics: a combined application of knowledge-based pose scoring and physical force field-based hit scoring functions improves the accuracy of structure-based virtual screening.22017385 · Hsieh, Jui-Hua, Yin, Shuangye, Wang, Xiang S et al.2012 · 41 citationsJournal of chemical information and modeling. 2012;52(1):16-28
Structural basis for μ-opioid receptor binding and activation.22078567 · Serohijos, Adrian W R, Yin, Shuangye, Ding, Feng et al.2012 · 36 citationsStructure (London, England : 1993). 2011;19(11):1683-90
Assemblathon 1: a competitive assessment of de novo short read assembly methods.21926179 · Earl, Dent, Bradnam, Keith, St John, John et al.2012 · 507 citationsGenome research. 2011;21(12):2224-41
Combined application of cheminformatics- and physical force field-based scoring functions improves binding affinity prediction for CSAR data sets.21780807 · Hsieh, Jui-Hua, Yin, Shuangye, Liu, Shubin et al.2012 · 23 citationsJournal of chemical information and modeling. 2011;51(9):2027-35
Metastability of free cobalt and iron clusters: a possible precursor to bulk ferromagnetism.21867094 · Xu, Xiaoshan, Yin, Shuangye, Moro, Ramiro et al.2011 · 42 citationsPhysical review letters. 2011;107(5):057203
Fingerprint-based structure retrieval using electron density.21287628 · Yin, Shuangye, Dokholyan, Nikolay V2011 · 9 citationsProteins. 2011;79(3):1002-9
Rapid flexible docking using a stochastic rotamer library of ligands.20712341 · Ding, Feng, Yin, Shuangye, Dokholyan, Nikolay V2011 · 89 citationsJournal of chemical information and modeling. 2010;50(9):1623-32
Computational design of a PAK1 binding protein.20460129 · Jha, Ramesh K, Leaver-Fay, Andrew, Yin, Shuangye et al.2010 · 68 citationsJournal of molecular biology. 2010;400(2):257-70
Computational evaluation of protein stability change upon mutations.20676985 · Yin, Shuangye, Ding, Feng, Dokholyan, Nikolay V2010 · 7 citationsMethods in molecular biology (Clifton, N.J.). 2010;634:189-201
Fast screening of protein surfaces using geometric invariant fingerprints.19805347 · Yin, Shuangye, Proctor, Elizabeth A, Lugovskoy, Alexey A et al.2009 · 85 citationsProceedings of the National Academy of Sciences of the United States of America. 2009;106(39):16622-6
MedusaScore: an accurate force field-based scoring function for virtual drug screening.18672869 · Yin, Shuangye, Biedermannova, Lada, Vondrasek, Jiri et al.2008 · 204 citationsJournal of chemical information and modeling. 2008;48(8):1656-62
Modeling backbone flexibility improves protein stability estimation.18073107 · Yin, Shuangye, Ding, Feng, Dokholyan, Nikolay V2008 · 158 citationsStructure (London, England : 1993). 2007;15(12):1567-76
Protein folding: then and now.17585870 · Chen, Yiwen, Ding, Feng, Nie, Huifen et al.2008 · 98 citationsArchives of biochemistry and biophysics. 2008;469(1):4-19
Eris: an automated estimator of protein stability.17538626 · Yin, Shuangye, Ding, Feng, Dokholyan, Nikolay V2007 · 405 citationsNature methods. 2007;4(6):466-7
Magnetic enhancement in cobalt-manganese alloy clusters.17501052 · Yin, Shuangye, Moro, Ramiro, Xu, Xiaoshan et al.2007 · 87 citationsPhysical review letters. 2007;98(11):113401
Non-classical dipoles in cold niobium clusterscond-mat/0610891v1 · Xiaoshan Xu, Shuangye Yin, Ramiro Moro et al.2006 · 19 citationsarXiv
Magnetic moments and adiabatic magnetization of free cobalt clusters.16384341 · Xu, Xiaoshan, Yin, Shuangye, Moro, Ramiro et al.2006 · 182 citationsPhysical review letters. 2005;95(23):237209
Spin uncoupling in free Nb clusters: support for nascent superconductivity.15447214 · Moro, Ramiro, Yin, Shuangye, Xu, Xiaoshan et al.2005 · 61 citationsPhysical review letters. 2004;93(8):086803
Ferroelectricity in free niobium clusters.12764191 · Moro, Ramiro, Xu, Xiaoshan, Yin, Shuangye et al.2003 · 144 citationsScience (New York, N.Y.). 2003;300(5623):1265-9
Novel structures and properties of gold nanowires.11289851 · Wang, B, Yin, S, Wang, G et al.2001 · 195 citationsPhysical review letters. 2001;86(10):2046-9
Career total: 61 works. 25 are in this corpus.
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