YF
Yong Fan
cs.CVBrainMagnetic Resonance ImagingAlgorithmsDeep Learningdeep learningfMRIMachine LearningNeural Networks, Computereess.IV
On Valency
published · living versionsW_ctyr365s·v1 · currentpublished
Identifying the Best Machine Learning Algorithms for Brain Tumor Segmentation, Progression Assessment, and Overall Survival Prediction in the BRATS Challenge
with Spyridon Bakas, Mauricio Reyes, Andras Jakab, Stefan Bauer +422
1 version
Preprints & journals
233 papers in the corpus · 2002–2026Discovering Heterogeneous Neurodegenerative Disease Patterns From MRI Data for Improved Prediction.42857586 · Zhang, Yuanwang, Li, Hongming, Fan, Yong2026 · 0 citationsMedical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. 2027;16894:160-170
Interpretable Local-to-Global Estimation of Brain Aging Speed From Morphological Changes Using Longitudinal Structural MRI Data.42847064 · Zhang, Yuanwang, Li, Hongming, Fan, Yong2026 · 0 citationsMedical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. 2027;16887:323-332
AI for Chemical and Biomedical Imaging: From Data Acquisition to Actionable Insight.42819406 · Fan, Yong, Makrogiannis, Sokratis, Zhou, Rong et al.2026 · 0 citationsChemical & biomedical imaging. 2026;4(9):1869-1871
GenFAR: A generalized representation of brain structure, derived from 49,246 multi-cohort MRIs via deep learning2608.12185v1 · Vishnu M. Bashyam, Guray Erus, Junhao Wen et al.2026 · 0 citationsarXiv
Co-Clinical Evaluation of Synthetic Vitamin D and Chemotherapy in Pancreatic Cancer by Integrated Imaging and Molecular Analyses.42574460 · Gupta, Mamta, Choi, Hoon, Karasic, Thomas et al.2026 · 0 citationsCancer research communications. 2026;6(8):1983-1992
Learning Anatomy-Grounded CT Vision-Language Representations with Organ-Hierarchical Report Knowledge2607.10953v1 · Guoliang You, Hongming Li, Yuanwang Zhang et al.2026 · 0 citationsarXiv
Personalized Network-Guided Neuromodulation Enhances Human Working Memory.42284508 · Khan, Ahsan, Li, Hongming, Blaine, Camille et al.2026 · 0 citationsAdvanced science (Weinheim, Baden-Wurttemberg, Germany). 2026;13(49):e23009
Neurophysiological Correlates of Neuroanatomical Dimensions in Major Depressive Disorder: Electroencephalographic Markers of Brain Function and Treatment Outcome.42494826 · Xiao, Wenyi, Woodham, Rachel D, Antoniades, Mathilde et al.2026 · 0 citationsBiological psychiatry global open science. 2026;6(5):100750
Mapping developmental patterns of intrinsic timescale.41993353 · Shafiei, Golia, Bagautdinova, Joëlle, Sydnor, Valerie J et al.2026 · 0 citationsbioRxiv : the preprint server for biology. 2026
Age-dependent acceleration of structural brain aging in medication-free major depressive disorder linked to neuroanatomical phenotype findings from COORDINATE-MDD consortium.42006788 · Sharma, Bhanu, Ballester, Pedro L, Minuzzi, Luciano et al.2026 · 0 citationsmedRxiv : the preprint server for health sciences. 2026
Testing for Network Specificity in Brain-Behavior Associations Using Ordinal Dominance Curves.41872989 · Hillman, Noah, Weinstein, Sarah M, Bagautdinova, Joëlle et al.2026 · 0 citationsHuman brain mapping. 2026;47(5):e70493
Hypothesis Generation via Interpretable Machine Learning: A Case Study on Risk Factors for Postradiation Therapy Lung Cancer Recurrence.42254819 · Zhang, Zheng, Lee, Sang Ho, Caruana, Rich et al.2026 · 0 citationsAdvances in radiation oncology. 2026;11(7):102032
Neuroanatomical dimensions in major depression linked to cognition, adverse life events, self-harm, metabolomics and genetics.41258534 · Xiao, Wenyi, Woodham, Rachel D, Cui, Yuhan et al.2025 · 6 citationsCommunications medicine. 2025;5(1):502
Uncovering functional connectivity patterns predictive of cognition in youth using interpretable predictive modeling.41100666 · Li, Hongming, Cieslak, Matthew, Salo, Taylor et al.2025 · 3 citationsProceedings of the National Academy of Sciences of the United States of America. 2025;122(42):e2505600122
Altered brain morphometry and its association with cognitive decline and APOE gene in normal people at risk for Alzheimer's disease.41071913 · Zhao, Min, Yang, Jiaxin, Cheng, Hewei et al.2025 · 0 citationsJournal of Alzheimer's disease : JAD. 2025;108(3):1185-1203
Validation of an Automated CT Image Analysis in the Prevention of Urinary Stones with Hydration Trial.40854610 · Tasian, Gregory E, Maalouf, Naim M, Harper, Jonathan D et al.2025 · 3 citationsJournal of endourology. 2025;39(9):953-959
MRI Detection of PDAC Response to KRAS Inhibitor Therapy-Response.40746107 · Zhou, Rong, Fan, Yong, Furth, Emma E et al.2025 · 0 citationsClinical cancer research : an official journal of the American Association for Cancer Research. 2025;31(15):3345
Deep learning based treatment remission prediction to transcranial direct current stimulation in bipolar depression using EEG power spectral density.40766130 · Chettuthara Moncy, Jijomon, Xiao, Wenyi, Woodham, Rachel D et al.2026 · 0 citationsmedRxiv : the preprint server for health sciences. 2025
dFCExpert: Learning Dynamic Functional Connectivity Patterns with Modularity and State Experts.39764022 · Chen, Tingting, Li, Hongming, Zheng, Hao et al.2025 · 6 citationsbioRxiv : the preprint server for biology. 2025
Precision Neuromodulation with Real-Time Brain Decoding for Working Memory Enhancement.40666905 · Khan, Ahsan, Li, Hongming, Blaine, Camille et al.2025 · 1 citationbioRxiv : the preprint server for biology. 2025
Reproducible sex differences in personalised functional network topography in youth.40536230 · Keller, Arielle S, Sun, Kevin Y, Francisco, Ashley et al.2025 · 2 citationsThe British journal of psychiatry : the journal of mental science. 2025;226(6):383-391
Polygenic Risk, Psychopathology, and Personalized Functional Brain Network Topography in Adolescence.39399003 · Sun, Kevin Y, Schmitt, J Eric, Moore, Tyler M et al.2025 · 8 citationsmedRxiv : the preprint server for health sciences. 2025
Reply by Authors.40294136 · Weaver, John K, Logan, Joseph, Van Batavia, Jason P et al.2025 · 1 citationThe Journal of urology. 2025;214(1):88-89
Mapping individualized multi-scale hierarchical brain functional networks from fMRI by self-supervised deep learning.40291726 · Li, Hongming, Zhuo, Chuanjun, Cui, Zaixu et al.2025 · 0 citationsbioRxiv : the preprint server for biology. 2025
Machine Learning Analysis of Videourodynamics to Predict Incident Hydronephrosis in Patients With Spina Bifida.40132220 · Weaver, John K, Logan, Joseph, Van Batavia, Jason P et al.2025 · 6 citationsThe Journal of urology. 2025;214(1):80-89
Differential large-scale network functional connectivity in cocaine-use disorder associates with drug-use outcomes.40113802 · Regier, Paul S, Hager, Nathan M, Gawrysiak, Michael et al.2025 · 6 citationsScientific reports. 2025;15(1):9636
Current and Future Applications of PET Radiomics in Radiation Oncology.39915189 · Fan, Yong, Feigenberg, Steven J, Simone, Charles B2025 · 4 citationsPET clinics. 2025;20(2):185-193
SurfNet: Reconstruction of Cortical Surfaces via Coupled Diffeomorphic Deformations.39974917 · Zheng, Hao, Li, Hongming, Fan, Yong2026 · 2 citationsbioRxiv : the preprint server for biology. 2025
A novel cross-modal data augmentation method based on contrastive unpaired translation network for kidney segmentation in ultrasound imaging.39904615 · Guo, Shuaizi, Sheng, Xiangyu, Chen, Haijie et al.2025 · 5 citationsMedical physics. 2025;52(6):3877-3887
Parsing disease heterogeneity in structural and functional MRI-derived measures using normative modeling and Generative Adversarial Networks (GANs).40485670 · Chintapalli, Sai Spandana, Govindarajan, Sindhuja T, Shou, Haochang et al.2026 · 0 citationsProceedings of SPIE--the International Society for Optical Engineering. 2025;13407
Spatial Heterogeneity and Subtypes of Functional Connectivity Development in Youth.39896611 · Li, Hongming, Cui, Zaixu, Cieslak, Matthew et al.2026 · 3 citationsbioRxiv : the preprint server for biology. 2025
Similarities and Differences in Neuroimaging.41171562 · Lin, Xiao, Sun, Yankun, Zhao, Haoyun et al.2025 · 0 citationsAdvances in experimental medicine and biology. 2025;1495:57-73
SegCSR: Weakly-Supervised Cortical Surfaces Reconstruction from Brain Ribbon Segmentations.39713375 · Zheng, Hao, Chen, Xiaoyang, Li, Hongming et al.2025 · 1 citationbioRxiv : the preprint server for biology. 2024
Predicting chronic kidney disease progression in children with posterior urethral valves.39648111 · Weaver, John K, Rickard, Mandy, Weinstein, Corey et al.2026 · 10 citationsJournal of pediatric urology. 2024
Brain-clinical pattern alterations after treatment in schizophrenia.39604074 · Jing, Rixing, Wang, Qiandong, Liu, Guozhong et al.2024 · 1 citationCerebral cortex (New York, N.Y. : 1991). 2024;34(11)
Relationship between MRI brain-age heterogeneity, cognition, genetics and Alzheimer's disease neuropathology.39437659 · Antoniades, Mathilde, Srinivasan, Dhivya, Wen, Junhao et al.2024 · 14 citationsEBioMedicine. 2024;109:105399
Author Correction: The Hydronephrosis Severity Index guides paediatric antenatal hydronephrosis management based on artificial intelligence applied to ultrasound images alone.39424912 · Erdman, Lauren, Rickard, Mandy, Drysdale, Erik et al.2024 · 0 citationsScientific reports. 2024;14(1):24475
Genetic and clinical correlates of two neuroanatomical AI dimensions in the Alzheimer's disease continuum.39368996 · Wen, Junhao, Yang, Zhijian, Nasrallah, Ilya M et al.2024 · 23 citationsTranslational psychiatry. 2024;14(1):420
The Hydronephrosis Severity Index guides paediatric antenatal hydronephrosis management based on artificial intelligence applied to ultrasound images alone.39349526 · Erdman, Lauren, Rickard, Mandy, Drysdale, Erik et al.2024 · 10 citationsScientific reports. 2024;14(1):22748
Enhancing Whole Slide Image Classification with Discriminative and Contrastive Learning.40046787 · Liang, Peixian, Zheng, Hao, Li, Hongming et al.2025 · 3 citationsMedical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. 2024;15004:102-112
Reproducible Sex Differences in Personalized Functional Network Topography in Youth.39386637 · Keller, Arielle S, Sun, Kevin Y, Francisco, Ashley et al.2025 · 1 citationbioRxiv : the preprint server for biology. 2024
Cross-modal Transfer Learning Based on an Improved CycleGAN Model for Accurate Kidney Segmentation in Ultrasound Images.39181806 · Guo, Shuaizi, Chen, Haijie, Sheng, Xiangyu et al.2024 · 7 citationsUltrasound in medicine & biology. 2024;50(11):1638-1645
Brain aging patterns in a large and diverse cohort of 49,482 individuals.39147830 · Yang, Zhijian, Wen, Junhao, Erus, Guray et al.2024 · 91 citationsNature medicine. 2024;30(10):3015-3026
Genetic and Clinical Correlates of AI-Based Brain Aging Patterns in Cognitively Unimpaired Individuals.38353984 · Skampardoni, Ioanna, Nasrallah, Ilya M, Abdulkadir, Ahmed et al.2024 · 28 citationsJAMA psychiatry. 2024;81(5):456-467
pNet: A toolbox for personalized functional networks modeling.38746228 · Ma, Yuncong, Li, Hongming, Zhou, Zhen et al.2024 · 0 citationsbioRxiv : the preprint server for biology. 2024
CopilotCAD: Empowering Radiologists with Report Completion Models and Quantitative Evidence from Medical Image Foundation Models2404.07424v1 · Sheng Wang, Tianming Du, Katherine Fischer et al.2024 · 2 citationsarXiv
A general exposome factor explains individual differences in functional brain network topography and cognition in youth.38583301 · Keller, Arielle S, Moore, Tyler M, Luo, Audrey et al.2025 · 28 citationsDevelopmental cognitive neuroscience. 2024;66:101370
Diffeomorphic image registration with bijective consistency.40041684 · Wu, Jiong, Li, Hongming, Fan, Yong2025 · 5 citationsProceedings of SPIE--the International Society for Optical Engineering. 2024;12926
Using normative modeling to assess pharmacological treatment effect on brain state in patients with schizophrenia.38252996 · Lin, Xiao, Huo, Yanxi, Wang, Qiandong et al.2024 · 5 citationsCerebral cortex (New York, N.Y. : 1991). 2024;34(2)
Neuroanatomical dimensions in medication-free individuals with major depressive disorder and treatment response to SSRI antidepressant medications or placebo.38948238 · Fu, Cynthia H Y, Antoniades, Mathilde, Erus, Guray et al.2025 · 39 citationsNature. Mental health. 2024;2(2):164-176
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