DS
David A. Sivak
cond-mat.stat-mechphysics.bio-phModels, Theoreticalq-bio.QMThermodynamicscond-mat.softphysics.chem-phMicrobiotaModels, Biologicalbiophysics
On Valency
published · living versionsW_p9f7v4n6·v1 · currentpublished
Preprints & journals
81 papers in the corpus · 2007–2026Optimal Control of Periodic Nonequilibrium Mechanochemical Systems via Automatic Differentiation2609.03217v1 · W. Callum Wareham, David A. Sivak2026 · 0 citationsarXiv
Thermodynamic geometry of friction on graphs: Resistance, commute times, and optimal transport.42768581 · Sawchuk, Jordan R, Sivak, David A2026 · 0 citationsPhysical review. E. 2026;114(2):L022105
Information-driven stepping in dimeric transport motors2607.27495v2 · Antonio Patr'on Castro, David A. Sivak2026 · 0 citationsarXiv
D-SPIN constructs regulatory network models from scRNA-seq that reveal organizing principles of perturbation response.42127893 · Jiang, Jialong, Chen, Sisi, Tsou, Tiffany et al.2026 · 6 citationsCell. 2026;189(13):4159-4184.e35
How to quantify immigration from community abundance data using the neutral community model.41779782 · Rafay, Ramis, Jones, Eric W, Sivak, David A et al.2026 · 3 citationsProceedings of the National Academy of Sciences of the United States of America. 2026;123(10):e2508689123
Harnessing Higher-Dimensional Fluctuations in an Information Engine.41698074 · Castro, Antonio Patrón, Bechhoefer, John, Sivak, David A2026 · 0 citationsPhysical review letters. 2026;136(4):047101
Effects of symmetry on coupled rotary molecular motors.41430880 · Iranbakhsh, Sara, Sivak, David A2025 · 0 citationsPhysical review. E. 2025;112(5):L052103
Efficiently Driving F_1 Molecular Motor in Experiment by Suppressing Nonequilibrium Variation.41110069 · Mishima, Takahide, Gupta, Deepak, Nakayama, Yohei et al.2025 · 6 citationsPhysical review letters. 2025;135(14):148402
Information thermodynamics of cellular ion pumps2506.11248v2 · Julian D. Jim'enez-Paz, Matthew P. Leighton, David A. Sivak2025 · 0 citationsPhys. Rev. Res. 8, 013155 (2026)
Multiparameter optimal control of F_1-ATPase.40745772 · Wareham, W Callum, Sivak, David A2025 · 2 citationsPhysical review. E. 2025;111(6-1):064410
D-SPIN constructs gene regulatory network models from multiplexed scRNA-seq data revealing organizing principles of cellular perturbation response.37131803 · Jiang, Jialong, Chen, Sisi, Tsou, Tiffany et al.2026 · 21 citationsbioRxiv : the preprint server for biology. 2025
Hunting for Maxwell's Demon in the Wild2504.11329v2 · Johan du Buisson, Jannik Ehrich, Matthew P. Leighton et al.2025 · 0 citationsarXiv
Optimal Control in Soft and Active Matter2504.08676v1 · Jos'e Alvarado, Erin Teich, David Sivak et al.2025 · 13 citationsAnn. Rev. Cond. Mat. Phys. 17, 327-348 (2026)
Flow of Energy and Information in Molecular Machines.39952638 · Leighton, Matthew P, Sivak, David A2025 · 19 citationsAnnual review of physical chemistry. 2025;76(1):379-403
Information thermodynamics of transition paths between multiple mesostates.39020997 · Louwerse, Miranda D, Sivak, David A2024 · 0 citationsPhysical review. E. 2024;109(6-1):064112
Unlocking the potential of information flow: Maximizing free-energy transduction in a model of an autonomous rotary molecular motor.38632770 · Grelier, Mathis, Sivak, David A, Ehrich, Jannik2024 · 10 citationsPhysical review. E. 2024;109(3-1):034115
Performance limits of information engines2402.17860v1 · Johan du Buisson, David A. Sivak, John Bechhoefer2024 · 7 citationsAdv. Phys. X 9(1), 2352112 (2024)
Jensen bound for the entropy production rate in stochastic thermodynamics.38366465 · Leighton, Matthew P, Sivak, David A2024 · 6 citationsPhysical review. E. 2024;109(1):L012101
First-passage-time statistics of growing microbial populations carry an imprint of initial conditions.38049502 · Jones, Eric W, Derrick, Joshua, Nisbet, Roger M et al.2023 · 12 citationsScientific reports. 2023;13(1):21340
Information Arbitrage in Bipartite Heat Engines2308.06325v2 · Matthew P. Leighton, Jannik Ehrich, David A. Sivak2023 · 9 citationsPhys. Rev. X 14, 041038 (2024)
Information Engine in a Nonequilibrium Bath.37595211 · Saha, Tushar K, Ehrich, Jannik, Gavrilov, Momčilo et al.2023 · 34 citationsPhysical review letters. 2023;131(5):057101
Efficient control protocols for an active Ornstein-Uhlenbeck particle.37723713 · Gupta, Deepak, Klapp, Sabine H L, Sivak, David A2023 · 22 citationsPhysical review. E. 2023;108(2-1):024117
Inferring Subsystem Efficiencies in Bipartite Molecular Machines.37172234 · Leighton, Matthew P, Sivak, David A2023 · 22 citationsPhysical review letters. 2023;130(17):178401
A symbiotic physical niche in Drosophila melanogaster regulates stable association of a multi-species gut microbiota.36944617 · Dodge, Ren, Jones, Eric W, Zhu, Haolong et al.2023 · 94 citationsNature communications. 2023;14(1):1557
Remembering the Work of Phillip L. Geissler: A Coda to His Scientific Trajectory.36719975 · Bowman, Gregory R, Cox, Stephen J, Dellago, Christoph et al.2023 · 1 citationAnnual review of physical chemistry. 2023;74:1-27
Optimal Control of the F1-ATPase Molecular Motor.36520417 · Gupta, Deepak, Large, Steven J, Toyabe, Shoichi et al.2022 · 18 citationsThe journal of physical chemistry letters. 2022;13(51):11844-11849
Optimal Control in Stochastic Thermodynamics2212.00706v2 · Steven Blaber, David A. Sivak2022 · 62 citationsJ. Phys. Commun. 7, 033001 (2023)
Connections between efficient control and spontaneous transitions in an Ising model.36671088 · Louwerse, Miranda D, Sivak, David A2023 · 1 citationPhysical review. E. 2022;106(6-1):064124
Bayesian Information Engine that Optimally Exploits Noisy Measurements.36206430 · Saha, Tushar K, Lucero, Joseph N E, Ehrich, Jannik et al.2022 · 26 citationsPhysical review letters. 2022;129(13):130601
Energy and information flows in autonomous systems2209.10644v2 · Jannik Ehrich, David A. Sivak2022 · 34 citationsFront. Phys. 11, 1108357 (2023)
Dynamic and Thermodynamic Bounds for Collective Motor-Driven Transport.36154431 · Leighton, Matthew P, Sivak, David A2022 · 22 citationsPhysical review letters. 2022;129(11):118102
Therapeutic algebra of immunomodulatory drug responses at single-cell resolution2208.10661v1 · Jialong Jiang, Sisi Chen, Tiffany Tsou et al.2022 · 0 citationsarXiv
Optimal control with a strong harmonic trap.36110009 · Blaber, Steven, Sivak, David A2022 · 11 citationsPhysical review. E. 2022;106(2):L022103
Energetic cost of feedback control2206.10793v2 · Jannik Ehrich, Susanne Still, David A. Sivak2022 · 17 citationsPhys. Rev. Res. 5, 023080 (2023)
Multidimensional minimum-work control of a 2D Ising model.35597666 · Louwerse, Miranda D, Sivak, David A2022 · 19 citationsThe Journal of chemical physics. 2022;156(19):194108
Information Thermodynamics of the Transition-Path Ensemble.35570424 · Louwerse, Miranda D, Sivak, David A2022 · 8 citationsPhysical review letters. 2022;128(17):170602
Efficient two-dimensional control of barrier crossing2204.03124v2 · Steven Blaber, David A. Sivak2022 · 13 citationsEPL 139 17001 (2022)
Stochastic microbiome assembly depends on context.35135881 · Jones, Eric W, Carlson, Jean M, Sivak, David A et al.2022 · 90 citationsProceedings of the National Academy of Sciences of the United States of America. 2022;119(7)
Maximal fluctuation exploitation in Gaussian information engines.34781582 · Lucero, Joseph N E, Ehrich, Jannik, Bechhoefer, John et al.2021 · 17 citationsPhysical review. E. 2021;104(4-1):044122
Performance scaling and trade-offs for collective motor-driven transport2108.13893v2 · Matthew P. Leighton, David A. Sivak2021 · 23 citationsNew J. Phys. 24 013009 (2022)
Steps minimize dissipation in rapidly driven stochastic systems.34525515 · Blaber, Steven, Louwerse, Miranda D, Sivak, David A2021 · 38 citationsPhysical review. E. 2021;104(2):L022101
Heat fluctuations in a harmonic chain of active particles.34525619 · Gupta, Deepak, Sivak, David A2021 · 24 citationsPhysical review. E. 2021;104(2-1):024605
Maximizing power and velocity of an information engine.33972432 · Saha, Tushar K, Lucero, Joseph N E, Ehrich, Jannik et al.2021 · 65 citationsProceedings of the National Academy of Sciences of the United States of America. 2021;118(20)
Free-energy transduction within autonomous systems.33735999 · Large, Steven J, Ehrich, Jannik, Sivak, David A2021 · 13 citationsPhysical review. E. 2021;103(2-1):022140
Skewed thermodynamic geometry and optimal free energy estimation.33380076 · Blaber, Steven, Sivak, David A2021 · 29 citationsThe Journal of chemical physics. 2020;153(24):244119
Hidden energy flows in strongly coupled nonequilibrium systems2009.07973v2 · Steven J Large, David A Sivak2020 · 3 citationsEPL, 133, 10003 (2021)
Nonequilibrium Energy Transduction in Stochastic Strongly Coupled Rotary Motors.32501698 · Lathouwers, Emma, Lucero, Joseph N E, Sivak, David A2020 · 23 citationsThe journal of physical chemistry letters. 2020;11(13):5273-5278
Modeling work-speed-accuracy trade-offs in a stochastic rotary machine.32289954 · Kasper, Alexandra K S, Sivak, David A2021 · 5 citationsPhysical review. E. 2020;101(3-1):032110
Optimal control of protein copy number.32168689 · Blaber, Steven, Sivak, David A2021 · 7 citationsPhysical review. E. 2020;101(2-1):022118
Breaking time-reversal symmetry for ratchet models of molecular machines.31330673 · Zarrin, Arshia, Sivak, David A, Brown, Aidan I2019 · 6 citationsPhysical review. E. 2019;99(6-1):062127
Career total: 111 works. 81 are in this corpus.Showing the 50 most recent.
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