ZZ
Zelin Zang
cs.LGcs.AIcs.CVq-bio.QMstat.MLbioinformaticscs.CEcs.CLcs.HCcs.SY
On Valency
published · living versionsW_v52vrv66·v1 · currentpublished
Preprints & journals
60 papers in the corpus · 2019–2026ABACUS: Program-Guided Multistep Reasoning over Frozen Judgment Models2610.25963v1 · Yuhao Wang, Zelin Zang2026 · 0 citationsarXivon Valency
Adaptive Prototype-Guided Personalized Propagation for Heterophilic Graphs With Missing Data.41979975 · Li, Mengran, Xing, Wenbin, Zang, Zelin et al.2026 · 0 citationsIEEE transactions on neural networks and learning systems. 2026;37(10):5685-5699
MoE-Enhanced Explainable Deep Manifold Transformation for Complex Data Embedding and Visualization.42329935 · Zang, Zelin, Wang, Yuhao, Wu, Jinlin et al.2026 · 1 citationIEEE transactions on pattern analysis and machine intelligence. 2026;48(10):13252-13269
Deep learning coupled with scalable domain-specific structural validation expands RNA virus discovery from metatranscriptomes.42894013 · Luo, Gaoyang, Zang, Zelin, Yuan, Ling et al.2026 · 0 citationsNature communications. 2026;17(1)
DMT-Dens: Density-preserving manifold visualization for biological data2608.17571v1 · Ruizhe Wang, Yixuan Dong, Bolin Yang et al.2026 · 0 citationsarXiv
CellPrism: A Visual Analytics System for Exploring AI-Driven Virtual Cells in Drug Discovery2608.01669v2 · Chuhan Shi, Zijian Guo, Zelin Zang et al.2026 · 0 citationsarXiv
scHelix: Asymmetric Dual-Stream Integration via Explicit Gene-Level Disentanglement2605.18576v1 · Xichen Yan, Zelin Zang, Changxi Chi et al.2026 · 0 citationsarXiv
MAT-Cell: A Multi-Agent Tree-Structured Reasoning Framework for Batch-Level Single-Cell Annotation2604.06269v2 · Yehui Yang, Zelin Zang, Xienan Zheng et al.2026 · 0 citationsarXiv
Task-dependent Performance of Single-cell Foundation Models under Low Supervision10.64898/2026.04.01.714123v2 · Xu, Y., Li, Y., Yuan, Y. et al.2026 · 0 citationsbioRxiv
Latent Poincaré Shaping for Agentic Reinforcement Learning2602.09375v3 · Hanchen Xia, Baoyou Chen, Zelin Zang et al.2026 · 0 citationsarXiv
SurgMotion: A Video-Native Foundation Model for Universal Understanding of Surgical Videos2602.05638v5 · Jinlin Wu, Felix Holm, Chuxi Chen et al.2026 · 0 citationsarXiv
CellScout: Visual Analytics for Mining Biomarkers in Cell State Discovery.41284397 · Sheng, Rui, Zang, Zelin, Wang, Jiachen et al.2025 · 0 citationsIEEE transactions on visualization and computer graphics. 2025;PP
Multi-center multi-omics integration predicts individualized prognosis in medullary thyroid carcinoma.41535264 · Zhou, Yan, Wang, Yingrui, Shi, Xiao et al.2026 · 5 citationsNature communications. 2026;17(1):432
The Dawn of Agentic EDA: A Survey of Autonomous Digital Chip Design2512.23189v2 · Zelin Zang, Yuhang Song, Aili Wang et al.2025 · 0 citationsarXiv
A Medical Multimodal Diagnostic Framework Integrating Vision-Language Models and Logic Tree Reasoning2512.21583v1 · Zelin Zang, Wenyi Gu, Siqi Ma et al.2025 · 1 citationarXiv
Anatomy-R1: Enhancing Anatomy Reasoning in Multimodal Large Language Models via Anatomical Similarity Curriculum and Group Diversity Augmentation2512.19512v2 · Ziyang Song, Zelin Zang, Zuyao Chen et al.2025 · 0 citationsarXiv
NeuroABench: A Multimodal Evaluation Benchmark for Neurosurgical Anatomy Identification2512.06921v1 · Ziyang Song, Zelin Zang, Xiaofan Ye et al.2025 · 0 citationsarXiv
Expanding the RNA Virus Universe by Scalable Structure-Guided Discovery10.1101/2025.11.24.690314v1 · Luo, G., Zang, Z., Yuan, L. et al.2025 · 0 citationsbioRxiv
Learning Cell-Aware Hierarchical Multi-Modal Representations for Robust Molecular Modeling2511.21120v1 · Mengran Li, Zelin Zang, Wenbin Xing et al.2025 · 0 citationsarXiv
Departures: Distributional Transport for Single-Cell Perturbation Prediction with Neural Schrödinger Bridges2511.13124v1 · Changxi Chi, Yufei Huang, Jun Xia et al.2025 · 0 citationsarXiv
FGeneBERT: function-driven pre-trained gene language model for metagenomics.41211880 · Duan, Chenrui, Zang, Zelin, Xu, Yongjie et al.2026 · 1 citationBriefings in bioinformatics. 2025;26(6)
Deep Multimanifold Transformation-Based Multivariate Time Series Fault Detection.40788812 · Liu, Hong, Qiu, Xiuxiu, Shi, Yiming et al.2025 · 2 citationsIEEE transactions on neural networks and learning systems. 2025;36(10):18397-18407
MedLA: A Logic-Driven Multi-Agent Framework for Complex Medical Reasoning with Large Language Models2509.23725v3 · Siqi Ma, Jiajie Huang, Fan Zhang et al.2025 · 4 citationsarXiv
MuST: multiple-modality structure transformation for single-cell spatial transcriptomics.40874816 · Zang, Zelin, Li, Liangyu, Xu, Yongjie et al.2025 · 2 citationsBriefings in bioinformatics. 2025;26(4)
HDTree: Generative Modeling of Cellular Hierarchies for Robust Lineage Inference2506.23287v3 · Zelin Zang, WenZhe Li, Yongjie Xu et al.2025 · 0 citationsarXiv
GenURL: A General Framework for Unsupervised Representation Learning.38315588 · Li, Siyuan, Liu, Zicheng, Zang, Zelin et al.2025 · 6 citationsIEEE transactions on neural networks and learning systems. 2025;36(1):286-298
PhyloGen: Language Model-Enhanced Phylogenetic Inference via Graph Structure Generation2412.18827v1 · ChenRui Duan, Zelin Zang, Siyuan Li et al.2024 · 4 citationsarXiv
Complex hierarchical structures analysis in single-cell data with Poincaré deep manifold transformation.39851075 · Xu, Yongjie, Zang, Zelin, Hu, Bozhen et al.2025 · 5 citationsBriefings in bioinformatics. 2024;26(1)
A Review of BioTree Construction in the Context of Information Fusion: Priors, Methods, Applications and Trends2410.04815v2 · Zelin Zang, Yongjie Xu, Chenrui Duan et al.2024 · 2 citationsarXiv
Set-CLIP: Exploring Aligned Semantic From Low-Alignment Multimodal Data Through A Distribution View2406.05766v2 · Zijia Song, Zelin Zang, Yelin Wang et al.2024 · 1 citationarXiv
GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models2406.01627v2 · Zicheng Liu, Jiahui Li, Siyuan Li et al.2024 · 4 citationsarXiv
FGBERT: Function-Driven Pre-trained Gene Language Model for Metagenomics2402.16901v2 · ChenRui Duan, Zelin Zang, Yongjie Xu et al.2024 · 5 citationsarXiv
Neural Network Diffusion2402.13144v3 · Kai Wang, Dongwen Tang, Boya Zeng et al.2024 · 4 citationsarXiv
DMT-EV: An Explainable Deep Network for Dimension Reduction.36409811 · Zang, Zelin, Cheng, Shenghui, Xia, Hanchen et al.2024 · 21 citationsIEEE transactions on visualization and computer graphics. 2024;30(3):1710-1727
Must: Maximizing Latent Capacity of Spatial Transcriptomics Data2401.07543v1 · Zelin Zang, Liangyu Li, Yongjie Xu et al.2024 · 0 citationsarXiv
Deep Manifold Graph Auto-Encoder for Attributed Graph Embedding2401.06727v1 · Bozhen Hu, Zelin Zang, Jun Xia et al.2024 · 4 citationsIn ICASSP 2023-2023 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP) (pp. 1-5). IEEE
Deep Manifold Transformation for Protein Representation Learning2402.09416v1 · Bozhen Hu, Zelin Zang, Cheng Tan et al.2024 · 0 citationsarXiv
Graph-level Protein Representation Learning by Structure Knowledge Refinement2401.02713v1 · Ge Wang, Zelin Zang, Jiangbin Zheng et al.2024 · 0 citationsarXiv
DiffAug: Enhance Unsupervised Contrastive Learning with Domain-Knowledge-Free Diffusion-based Data Augmentation2309.07909v2 · Zelin Zang, Hao Luo, Kai Wang et al.2023 · 0 citationsarXiv
Structure-preserving visualization for single-cell RNA-Seq profiles using deep manifold transformation with batch-correction.37016133 · Xu, Yongjie, Zang, Zelin, Xia, Jun et al.2023 · 17 citationsCommunications biology. 2023;6(1):369
UDRN: Unified Dimensional Reduction Neural Network for feature selection and feature projection.36827960 · Zang, Zelin, Xu, Yongjie, Lu, Linyan et al.2023 · 15 citationsNeural networks : the official journal of the International Neural Network Society. 2023;161:626-637
Boosting Novel Category Discovery Over Domains with Soft Contrastive Learning and All-in-One Classifier2211.11262v3 · Zelin Zang, Lei Shang, Senqiao Yang et al.2022 · 23 citationsarXiv
EVNet: An Explainable Deep Network for Dimension Reduction2211.15478v1 · Zelin Zang, Shenghui Cheng, Linyan Lu et al.2022 · 3 citationsarXiv
Author Correction: Artificial intelligence defines protein-based classification of thyroid nodules.36180436 · Sun, Yaoting, Selvarajan, Sathiyamoorthy, Zang, Zelin et al.2022 · 6 citationsCell discovery. 2022;8(1):100
Artificial intelligence defines protein-based classification of thyroid nodules.36068205 · Sun, Yaoting, Selvarajan, Sathiyamoorthy, Zang, Zelin et al.2022 · 73 citationsCell discovery. 2022;8(1):85
DLME: Deep Local-flatness Manifold Embedding2207.03160v2 · Zelin Zang, Siyuan Li, Di Wu et al.2022 · 26 citationsarXiv
Architecture-Agnostic Masked Image Modeling -- From ViT back to CNN2205.13943v4 · Siyuan Li, Di Wu, Fang Wu et al.2022 · 22 citationsarXiv
Surrogate Representation Learning with Isometric Mapping for Gray-box Graph Adversarial Attacks2110.10482v3 · Zihan Liu, Yun Luo, Zelin Zang et al.2021 · 14 citationsWSDM22: Proceedings of the Fifteenth ACM International Conference on Web Search and Data Mining February 2022
Exploring Localization for Self-supervised Fine-grained Contrastive Learning2106.15788v4 · Di Wu, Siyuan Li, Zelin Zang et al.2021 · 4 citationsarXiv
Unsupervised Deep Manifold Attributed Graph Embedding2104.13048v1 · Zelin Zang, Siyuan Li, Di Wu et al.2021 · 7 citationsarXiv
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