DK
Daniel Keller
neuroscienceModels, NeurologicalNeuronsAstrocytesmouse brainBraincell densityNeocortexastrocyteComputer Simulation
On Valency
published · living versionsW_rufwjexd·v1 · currentpublished
The effect of ionic diffusion on extracellular potentials in neural tissue
with Geir Halnes, Tuomo Mäki-Marttunen, Klas H. Pettersen, Gaute T. Einevoll
1 version
Preprints & journals
75 papers in the corpus · 2004–2026An extended and improved CCFv3 annotation and Nissl atlas of the entire mouse brain.40800985 · Piluso, Sébastien, Verasztó, Csaba, Carey, Harry et al.2026 · 2 citationsImaging neuroscience (Cambridge, Mass.). 2025;3
A multimodal spatial atlas of transcriptomic, morphological, and electrophysiological cell type densities in the mouse brain.41875149 · Verasztó, Csaba, Roussel, Yann, Kanari, Lida et al.2026 · 0 citationsPLoS computational biology. 2026;22(3):e1014106
Modeling and simulation of neocortical micro- and mesocircuitry (Part I, anatomy).41556767 · Reimann, Michael W, Bolaños-Puchet, Sirio, Courcol, Jean-Denis et al.2026 · 20 citationseLife. 2026;13
Modeling and simulation of neocortical micro- and mesocircuitry (Part II, Physiology and experimentation).41556778 · Isbister, James B, Ecker, András, Pokorny, Christoph et al.2026 · 22 citationseLife. 2026;13
Sex-specific systemic and brain metabolic responses to a standardized ketogenic diet in mice.42120631 · Lorin, Charlotte, Diaceri, Giacomo, Garcia, Miguel et al.2026 · 0 citationsLab animal. 2026;55(6):230-240
An interactive 3D atlas of gene expression in the mouse brain10.64898/2026.01.20.700446v2 · Carey, H., Piluso, S., Bjerke, I. et al.2026 · 0 citationsbioRxiv
A multiscale electro-metabolic model of a rat neocortical circuit reveals the impact of ageing on central cortical layers.40393041 · Farina, Sofia, Cattabiani, Alessandro, Mandge, Darshan et al.2025 · 1 citationPLoS computational biology. 2025;21(5):e1013070
Seizure and redox rescue in a model of glucose transport deficiency.40184423 · Coggan, Jay S, Shichkova, Polina, Markram, Henry et al.2025 · 2 citationsPLoS computational biology. 2025;21(4):e1012959
Modeling of Blood Flow Dynamics in Rat Somatosensory Cortex.39857656 · Battini, Stéphanie, Cantarutti, Nicola, Kotsalos, Christos et al.2025 · 2 citationsBiomedicines. 2024;13(1)
Cell density quantification of high resolution Nissl images of the juvenile rat brain.39744456 · Meystre, Julie, Jacquemier, Jean, Burri, Olivier et al.2025 · 6 citationsFrontiers in neuroanatomy. 2024;18:1463632
A quantitative spatial atlas of transcriptomic, morphological, and electrophysiological cell type densities in the mouse brain10.1101/2024.12.30.630728v1 · Veraszto, C., Roussel, Y., Kanari, L. et al.2024 · 1 citationbioRxiv
A multiscale electro-metabolic model of a rat neocortical circuit reveals the impact of ageing on central cortical layers10.1101/2024.12.10.627740v1 · Farina, S., Cattabiani, A., Mandge, D. et al.2024 · 1 citationbioRxiv
Modeling and Simulation of Neocortical Micro- and Mesocircuitry. Part II: Physiology and Experimentation10.1101/2023.05.17.541168v6 · Isbister, J. B., Ecker, A., Pokorny, C. et al.2023 · 30 citationsbioRxiv
Modeling of blood flow dynamics in the rat somatosensory cortex10.1101/2024.11.14.623572v1 · Battini, S., Cantarutti, N., Kotsalos, C. et al.2024 · 1 citationbioRxiv
Structural and molecular characterization of astrocyte and vasculature connectivity in the mouse hippocampus and cortex.39007459 · Lorin, Charlotte, Guiet, Romain, Chiaruttini, Nicolas et al.2024 · 4 citationsGlia. 2024;72(11):2001-2021
An extended and improved CCFv3 annotation and Nissl atlas of the entire mouse brain10.1101/2024.11.06.622212v1 · Piluso, S., Veraszto, C., Carey, H. et al.2024 · 2 citationsbioRxiv
Brain Metabolism in Health and Neurodegeneration: The Interplay Among Neurons and Astrocytes.39451233 · Shichkova, Polina, Coggan, Jay S, Markram, Henry et al.2024 · 33 citationsCells. 2024;13(20)
Modeling and Simulation of Rat Non-Barrel Somatosensory Cortex. Part I: Modeling Anatomy10.1101/2022.08.11.503144v5 · Reimann, M. W., Bolanos Puchet, S., Egas Santander, D. et al.2022 · 12 citationsbioRxiv
Synthesis of geometrically realistic and watertight neuronal ultrastructure manifolds for in silico modeling.39129363 · Abdellah, Marwan, Foni, Alessandro, Cantero, Juan José García et al.2024 · 0 citationsBriefings in bioinformatics. 2024;25(5)
Synthesis of geometrically realistic and watertight neuronal ultrastructure manifolds for in silico modeling10.1101/2024.03.11.584388v3 · Abdellah, M., Foni, A., Garcia Cantero, J. J. et al.2024 · 0 citationsbioRxiv
Comparing fingers and gestures for bci control using an optimized classical machine learning decoder2406.17391v1 · D. Keller, M. J. Vansteensel, S. Mehrkanoon et al.2024 · 0 citationsarXiv
Breakdown and repair of the aging brain metabolic system10.1101/2023.08.30.555341v2 · Shichkova, P., Coggan, J. S., Kanari, L. et al.2023 · 1 citationbioRxiv
Cell Densities in the Mouse Brain: A Systematic Review.30405363 · Keller, Daniel, Erö, Csaba, Markram, Henry2023 · 436 citationsFrontiers in neuroanatomy. 2018;12:83
"His lack of a mask ruined everything." Restaurant customer satisfaction during the COVID-19 outbreak: An analysis of Yelp review texts and star-ratings.34493888 · Kostromitina, Maria, Keller, Daniel, Cavusoglu, Muhittin et al.2023 · 53 citationsInternational journal of hospitality management. 2021;98:103048
Cell-type-specific densities in mouse somatosensory cortex derived from scRNA-seq and in situ RNA hybridization.37007642 · Keller, Daniel, Verasztó, Csaba, Markram, Henry2023 · 1 citationFrontiers in neuroanatomy. 2023;17:1118170
Ultraliser: a framework for creating multiscale, high-fidelity and geometrically realistic 3D models for in silico neuroscience.36434788 · Abdellah, Marwan, Cantero, Juan José García, Guerrero, Nadir Román et al.2023 · 14 citationsBriefings in bioinformatics. 2023;24(1)
A method to estimate the cellular composition of the mouse brain from heterogeneous datasets.36542673 · Rodarie, Dimitri, Verasztó, Csaba, Roussel, Yann et al.2023 · 38 citationsPLoS computational biology. 2022;18(12):e1010739
Mapping of morpho-electric features to molecular identity of cortical inhibitory neurons.36602951 · Roussel, Yann, Verasztó, Csaba, Rodarie, Dimitri et al.2023 · 14 citationsPLoS computational biology. 2023;19(1):e1010058
A Modular Workflow for Model Building, Analysis, and Parameter Estimation in Systems Biology and Neuroscience.34709562 · Santos, João P G, Pajo, Kadri, Trpevski, Daniel et al.2022 · 8 citationsNeuroinformatics. 2022;20(1):241-259
Ultraliser: a framework for creating multiscale, high-fidelity and geometrically realistic 3D models for in silico neuroscience10.1101/2022.07.27.501675v2 · Abdellah, M., Garcia Cantero, J. J., Roman Guerrero, N. et al.2022 · 14 citationsbioRxiv
A method to estimate the cellular composition of the mouse brain from heterogeneous datasets10.1101/2021.11.20.469384v3 · Rodarie, D., Veraszto, C., Roussel, Y. et al.2021 · 38 citationsbioRxiv
Combining hypothesis- and data-driven neuroscience modeling in FAIR workflows.35792600 · Eriksson, Olivia, Bhalla, Upinder Singh, Blackwell, Kim T et al.2022 · 38 citationseLife. 2022;11
Representing stimulus information in an energy metabolism pathway.35271865 · Coggan, Jay S, Keller, Daniel, Markram, Henry et al.2022 · 8 citationsJournal of theoretical biology. 2022;540:111090
Digital Reconstruction of the Neuro-Glia-Vascular Architecture.34387659 · Zisis, Eleftherios, Keller, Daniel, Kanari, Lida et al.2022 · 57 citationsCerebral cortex (New York, N.Y. : 1991). 2021;31(12):5686-5703
A Standardized Brain Molecular Atlas: A Resource for Systems Modeling and Simulation.34858137 · Shichkova, Polina, Coggan, Jay S, Markram, Henry et al.2021 · 8 citationsFrontiers in molecular neuroscience. 2021;14:604559
Mapping of morpho-electric features to molecular identity of cortical inhibitory neurons10.1101/2021.11.24.469815v1 · Roussel, Y., Veraszto, C., Rodarie, D. et al.2021 · 14 citationsbioRxiv
Clinically inapparent right heart dysfunction is associated with reduced myofilament force development in coronary artery disease.33663396 · Bening, C, Sales, V L, Alhussini, K et al.2021 · 2 citationsBMC cardiovascular disorders. 2021;21(1):125
A Machine-Generated View of the Role of Blood Glucose Levels in the Severity of COVID-19.34395368 · Logette, Emmanuelle, Lorin, Charlotte, Favreau, Cyrille et al.2021 · 54 citationsFrontiers in public health. 2021;9:695139
Supervised Learning With Perceptual Similarity for Multimodal Gene Expression Registration of a Mouse Brain Atlas.34393747 · Krepl, Jan, Casalegno, Francesco, Delattre, Emilie et al.2021 · 11 citationsFrontiers in neuroinformatics. 2021;15:691918
Metaball skinning of synthetic astroglial morphologies into realistic mesh models for visual analytics and in silico simulations.34252950 · Abdellah, Marwan, Foni, Alessandro, Zisis, Eleftherios et al.2021 · 10 citationsBioinformatics (Oxford, England). 2021;37(Suppl_1):i426-i433
Excitation states of metabolic networks predict dose-response fingerprinting and ligand pulse phase signalling.31866398 · Coggan, Jay S, Keller, Daniel, Markram, Henry et al.2021 · 6 citationsJournal of theoretical biology. 2020;487:110123
Elevated blood glucose levels as a primary risk factor for the severity of COVID-1910.1101/2021.04.29.21256294v1 · Logette, E., Lorin, C., Favreau, C. P. H. et al.2021 · 5 citationsmedRxiv
A Modular Workflow for Model Building, Analysis, and Parameter Estimation in Systems Biology and Neuroscience10.1101/2020.11.17.385203v2 · Santos, J. P. G., Pajo, K., Trpevski, D. et al.2020 · 8 citationsbioRxiv
Interactive visualization and analysis of morphological skeletons of brain vasculature networks with VessMorphoVis.32657395 · Abdellah, Marwan, Guerrero, Nadir Román, Lapere, Samuel et al.2021 · 19 citationsBioinformatics (Oxford, England). 2020;36(Suppl_1):i534-i541
Architecture of the Neuro-Glia-Vascular System10.1101/2021.01.19.427241v3 · Zisis, E., Keller, D., Kanari, L. et al.2021 · 2 citationsbioRxiv
A Refined SVD Algorithm for Collaborative Filtering2012.06923v1 · Marko Kabi'c, Gabriel Duque L'opez, Daniel Keller2020 · 0 citationsarXiv
Corrigendum: A Cell Atlas for the Mouse Brain.30837861 · Erö, Csaba, Gewaltig, Marc-Oliver, Keller, Daniel et al.2020 · 4 citationsFrontiers in neuroinformatics. 2019;13:7
A Process for Digitizing and Simulating Biologically Realistic Oligocellular Networks Demonstrated for the Neuro-Glio-Vascular Ensemble.30319342 · Coggan, Jay S, Calì, Corrado, Keller, Daniel et al.2020 · 38 citationsFrontiers in neuroscience. 2018;12:664
A Cell Atlas for the Mouse Brain.30546301 · Erö, Csaba, Gewaltig, Marc-Oliver, Keller, Daniel et al.2020 · 296 citationsFrontiers in neuroinformatics. 2018;12:84
A Derived Positional Mapping of Inhibitory Subtypes in the Somatosensory Cortex.31447655 · Keller, Daniel, Meystre, Julie, Veettil, Rahul V et al.2020 · 15 citationsFrontiers in neuroanatomy. 2019;13:78
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