CL
Chi-Man Liu
q-bio.GNSoftwarecs.DCGenomicsHigh-Throughput Nucleotide SequencingbioinformaticsBioinformaticscs.CEcs.DSGPU
On Valency
published · living versionsW_yhpv267m·v1 · currentpublished
MEGAHIT: An ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
with Dinghua Li, Ruibang Luo, Kunihiko Sadakane, Tak-Wah Lam
1 version
Preprints & journals
11 papers in the corpus · 2012–2021HKG: an open genetic variant database of 205 Hong Kong cantonese exomes.35156024 · Ou, Min, Leung, Henry Chi-Ming, Leung, Amy Wing-Sze et al.2024 · 4 citationsNAR genomics and bioinformatics. 2022;4(1):lqac005
CONNET: Accurate Genome Consensus in Assembling Nanopore Sequencing Data via Deep Learning.32422594 · Zhang, Yifan, Liu, Chi-Man, Leung, Henry C M et al.2021 · 8 citationsiScience. 2020;23(5):101128
BASE: a practical de novo assembler for large genomes using long NGS reads.27586129 · Liu, Binghang, Liu, Chi-Man, Li, Dinghua et al.2017 · 11 citationsBMC genomics. 2016;17 Suppl 5:499
MEGAHIT v1.0: A fast and scalable metagenome assembler driven by advanced methodologies and community practices.27012178 · Li, Dinghua, Luo, Ruibang, Liu, Chi-Man et al.2018 · 2,095 citationsMethods (San Diego, Calif.). 2016;102:3-11
MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph.25609793 · Li, Dinghua, Liu, Chi-Man, Luo, Ruibang et al.2015 · 9,932 citationsBioinformatics (Oxford, England). 2015;31(10):1674-6
MICA: A fast short-read aligner that takes full advantage of Many Integrated Core Architecture (MIC).25952019 · Luo, Ruibang, Cheung, Jeanno, Wu, Edward et al.2015 · 45 citationsBMC bioinformatics. 2015;16 Suppl 7:S10
BALSA: integrated secondary analysis for whole-genome and whole-exome sequencing, accelerated by GPU.24949238 · Luo, Ruibang, Wong, Yiu-Lun, Law, Wai-Chun et al.2014 · 18 citationsPeerJ. 2014;2:e421
MICA: A fast short-read aligner that takes full advantage of Intel Many Integrated Core Architecture (MIC)1402.4876v1 · Sze-Hang Chan, Jeanno Cheung, Edward Wu et al.2014 · 13 citationsarXiv
GPU-Accelerated BWT Construction for Large Collection of Short Reads1401.7457v1 · Chi-Man Liu, Ruibang Luo, Tak-Wah Lam2014 · 26 citationsarXiv
SOAP3-dp: fast, accurate and sensitive GPU-based short read aligner.23741504 · Luo, Ruibang, Wong, Thomas, Zhu, Jianqiao et al.2014 · 426 citationsPloS one. 2013;8(5):e65632
SOAP3: ultra-fast GPU-based parallel alignment tool for short reads.22285832 · Liu, Chi-Man, Wong, Thomas, Wu, Edward et al.2012 · 249 citationsBioinformatics (Oxford, England). 2012;28(6):878-9
Career total: 22 works. 11 are in this corpus.
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