CC
Chris Chute
Vocabulary, ControlledElectronic Health RecordsNatural Language ProcessingCOVID-19Terminology as TopicAlgorithmsMedical Records Systems, ComputerizedArtificial IntelligenceSemanticsInternational Classification of Diseases
On Valency
published · living versionsW_xe24gwhn·v1 · currentpublished
CheXpert: A Large Chest Radiograph Dataset with Uncertainty Labels and Expert Comparison
with Jeremy Irvin, Pranav Rajpurkar, Michael Ko, Yifan Yu +15
1 version
Preprints & journals
404 papers in the corpus · 1985–2026Increasing Multimorbidity Burden After COVID-19 Infection Among People With and Without HIV in the United States: Insights From the National Clinical Cohort Collaborative (N3C).42787535 · Wang, Yumeng, Sabit, Ahmed, Anzalone, Jerrod et al.2026 · 0 citationsOpen forum infectious diseases. 2026;13(9):ofag560
Revision process for the International statistical classification of diseases and related health problems.42683092 · White, Jonathan Ml, Kita, Maaya, Krpelanova, Eva et al.2026 · 0 citationsBulletin of the World Health Organization. 2026;104(9):622-630
Mondo: integrating disease terminology across communities.41052288 · Vasilevsky, Nicole A, Toro, Sabrina, Matentzoglu, Nicolas et al.2026 · 28 citationsGenetics. 2026;232(4)
Efficient Exploration at Scale2603.17378v2 · Seyed Mohammad Asghari, Chris Chute, Vikranth Dwaracherla et al.2026 · 0 citationsarXiv
Governing real-world health data as a public utility.41785358 · Haendel, Melissa A, Ahern, Ryan, Bailey, Kasie B et al.2026 · 6 citationsScience (New York, N.Y.). 2026;391(6789):993-996
Development of a robust corpus for automated evaluation of online health information in Chinese using the DISCERN scale.41223037 · E, Ting, Li, Xingxi, Liang, Jun et al.2026 · 0 citationsJournal of the American Medical Informatics Association : JAMIA. 2026;33(2):316-325
LinkML: an open data modeling framework.41384800 · Moxon, Sierra A T, Solbrig, Harold, Harris, Nomi L et al.2026 · 6 citationsGigaScience. 2026;15
Multi-scale Data Improves Performance of Machine Learning Model for Long COVID Prediction.40909786 · Wei, Wei-Qi, Guardo, Christopher, Zhang, Xinmeng et al.2026 · 2 citationsResearch square. 2025
Re-engineering a machine learning phenotype to adapt to the changing COVID-19 landscape: a machine learning modelling study from the N3C and RECOVER consortia.40858480 · Crosskey, Miles, McIntee, Tomas, Preiss, Sandy et al.2025 · 6 citationsThe Lancet. Digital health. 2025;7(8):100887
Advancing the science of genomic learning healthcare systems.41169653 · Manolio, Teri A, Rider, Renee, Bult, Carol J et al.2025 · 5 citationsLearning health systems. 2025;9(4):e70027
EFFECT OF PAXLOVID TREATMENT DURING ACUTE COVID-19 ON LONG COVID ONSET: AN EHR-BASED TARGET TRIAL EMULATION FROM THE N3C AND RECOVER CONSORTIA.38343863 · Preiss, Alexander, Bhatia, Abhishek, Aragon, Leyna V et al.2025 · 12 citationsmedRxiv : the preprint server for health sciences. 2025
Effect of nirmatrelvir/ritonavir (Paxlovid) on hospitalization among adults with COVID-19: An electronic health record-based target trial emulation from N3C.39823513 · Bhatia, Abhishek, Preiss, Alexander J, Xiao, Xuya et al.2025 · 20 citationsPLoS medicine. 2025;22(1):e1004493
Impact of COVID-19 Diagnosis on Weight Trajectories of Children in the US National COVID Cohort Collaborative.39761108 · Mottalib, Md Mozaharul, Phan, Thao-Ly T, Bramante, Carolyn T et al.2025 · 1 citationChildhood obesity (Print). 2025;21(4):380-391
Corrigendum to 'COVID-19 outcomes in persons with hemophilia: results from a US-based national COVID-19 surveillance registry' [Journal of Thrombosis and Haemostasis Volume 22, Issue 1, January 2024, Pages 61-75].39394035 · Sharathkumar, Anjali, Wendt, Linder, Ortman, Chris et al.2024 · 0 citationsJournal of thrombosis and haemostasis : JTH. 2024;22(11):3330
Value Set Hub: Software for developing and curating high-quality value sets.39417115 · Gold, Sigfried, Flack, Joseph E, Lutters, Wayne G et al.2024 · 0 citationsmedRxiv : the preprint server for health sciences. 2024
Linking The Cancer Imaging Archive and GenBank to the National Clinical Cohort Collaborative.39822917 · Baghal, Ahmad, Saltz, Joel, Kurc, Tahsin et al.2025 · 0 citationsLearning health systems. 2025;9(1):e10457
A Case Demonstration of the Open Health Natural Language Processing Toolkit From the National COVID-19 Cohort Collaborative and the Researching COVID to Enhance Recovery Programs for a Natural Language Processing System for COVID-19 or Postacute Sequelae of SARS CoV-2 Infection: Algorithm Development and Validation.39250782 · Wen, Andrew, Wang, Liwei, He, Huan et al.2026 · 3 citationsJMIR medical informatics. 2024;12:e49997
Linking Health Terminologies: A Unified Approach to the WHO Family of International Classifications.39176628 · Tu, Samson W, Almborg, Ann-Helene, Martinuzzi, Andrea et al.2024 · 2 citationsStudies in health technology and informatics. 2024;316:1333-1337
Insights from an N3C RECOVER EHR-based cohort study characterizing SARS-CoV-2 reinfections and Long COVID.38992084 · Hadley, Emily, Yoo, Yun Jae, Patel, Saaya et al.2025 · 43 citationsCommunications medicine. 2024;4(1):129
Finding Long-COVID: Temporal Topic Modeling of Electronic Health Records from the N3C and RECOVER Programs.38947087 · O'Neil, Shawn T, Madlock-Brown, Charisse, Wilkins, Kenneth J et al.2025 · 12 citationsmedRxiv : the preprint server for health sciences. 2024
Long COVID incidence in adults and children between 2020 and 2023: a real-world data study from the RECOVER Initiative.38746290 · Mandel, Hannah, Yoo, Yun, Allen, Andrea et al.2025 · 65 citationsResearch square. 2024
Association of Premorbid GLP-1RA and SGLT-2i Prescription Alone and in Combination with COVID-19 Severity.38536629 · Klein, Klara R, Abrahamsen, Trine J, Kahkoska, Anna R et al.2026 · 4 citationsDiabetes therapy : research, treatment and education of diabetes and related disorders. 2024;15(5):1169-1186
Artificial Intelligence and Technology Collaboratories: Innovating aging research and Alzheimer's care.38324244 · Abadir, Peter, Oh, Esther, Chellappa, Rama et al.2024 · 34 citationsAlzheimer's & dementia : the journal of the Alzheimer's Association. 2024;20(4):3074-3079
Effectiveness of mRNA Booster Vaccine Against Coronavirus Disease 2019 Infection and Severe Outcomes Among Persons With and Without Immune Dysfunction: A Retrospective Cohort Study of National Electronic Medical Record Data in the United States.38379569 · Sun, Jing, Zheng, Qulu, Anzalone, Alfred J et al.2025 · 8 citationsOpen forum infectious diseases. 2024;11(2):ofae019
The Human Phenotype Ontology in 2024: phenotypes around the world.37953324 · Gargano, Michael A, Matentzoglu, Nicolas, Coleman, Ben et al.2024 · 406 citationsNucleic acids research. 2024;52(D1):D1333-D1346
The Monarch Initiative in 2024: an analytic platform integrating phenotypes, genes and diseases across species.38000386 · Putman, Tim E, Schaper, Kevin, Matentzoglu, Nicolas et al.2024 · 107 citationsNucleic acids research. 2024;52(D1):D938-D949
Genetic and Survey Data Improves Performance of Machine Learning Model for Long COVID.38196610 · Wei, Wei-Qi, Guardo, Christopher, Gandireddy, Srushti et al.2026 · 0 citationsResearch square. 2023
The Science of Precision Prevention: Research Opportunities and Clinical Applications to Reduce Cardiovascular Health Disparities.38375059 · Pearson, Thomas A, Vitalis, Debbie, Pratt, Charlotte et al.2025 · 57 citationsJACC. Advances. 2024;3(1)
Reengineering a machine learning phenotype to adapt to the changing COVID-19 landscape: A study from the N3C and RECOVER consortia10.1101/2023.12.08.23299718v1 · Crosskey, M., McIntee, T., Preiss, A. J. et al.2023 · 7 citationsmedRxiv
An open natural language processing (NLP) framework for EHR-based clinical research: a case demonstration using the National COVID Cohort Collaborative (N3C).37555837 · Liu, Sijia, Wen, Andrew, Wang, Liwei et al.2023 · 26 citationsJournal of the American Medical Informatics Association : JAMIA. 2023;30(12):2036-2040
The N3C governance ecosystem: A model socio-technical partnership for the future of collaborative analytics at scale.38229902 · Suver, Christine, Harper, Jeremy, Loomba, Johanna et al.2025 · 10 citationsJournal of clinical and translational science. 2023;7(1):e252
Risk factors associated with post-acute sequelae of SARS-CoV-2: an N3C and NIH RECOVER study.37880596 · Hill, Elaine L, Mehta, Hemalkumar B, Sharma, Suchetha et al.2023 · 62 citationsBMC public health. 2023;23(1):2103
Outcomes of SARS-CoV-2 infection among patients with orthopaedic fracture surgery in the National COVID Cohort Collaborative (N3C).37871347 · Levitt, Eli B, Patch, David A, Hess, Matthew C et al.2023 · 1 citationInjury. 2023;54(12):111092
Risk of post-acute sequelae of SARS-CoV-2 infection associated with pre-coronavirus disease obstructive sleep apnea diagnoses: an electronic health record-based analysis from the RECOVER initiative.37166330 · L Mandel, Hannah, Colleen, Gunnar, Abedian, Sajjad et al.2023 · 35 citationsSleep. 2023;46(9)
De-black-boxing health AI: demonstrating reproducible machine learning computable phenotypes using the N3C-RECOVER Long COVID model in the All of Us data repository.37218289 · Pfaff, Emily R, Girvin, Andrew T, Crosskey, Miles et al.2023 · 19 citationsJournal of the American Medical Informatics Association : JAMIA. 2023;30(7):1305-1312
Long COVID risk and pre-COVID vaccination in an EHR-based cohort study from the RECOVER program.37217471 · Brannock, M Daniel, Chew, Robert F, Preiss, Alexander J et al.2023 · 130 citationsNature communications. 2023;14(1):2914
Clinical encounter heterogeneity and methods for resolving in networked EHR data: a study from N3C and RECOVER programs.37087110 · Leese, Peter, Anand, Adit, Girvin, Andrew et al.2023 · 20 citationsJournal of the American Medical Informatics Association : JAMIA. 2023;30(6):1125-1136
COVID-19 outcomes in persons with hemophilia: results from a US-based national COVID-19 surveillance registry.37182697 · Sharathkumar, Anjali, Wendt, Linder, Ortman, Chris et al.2024 · 3 citationsJournal of thrombosis and haemostasis : JTH. 2024;22(1):61-75
Effect of Nirmatrelvir/Ritonavir (Paxlovid) on Hospitalization among Adults with COVID-19: an EHR-based Target Trial Emulation from N3C.37205340 · Bhatia, Abhishek, Preiss, Alexander J, Xiao, Xuya et al.2026 · 12 citationsmedRxiv : the preprint server for health sciences. 2023
ICD-11: A catalyst for advancing patient safety surveillance globally.36894925 · Forster, Alan J, Chute, Christopher G, Pincus, Harold Alan et al.2023 · 11 citationsBMC medical informatics and decision making. 2023;21(Suppl 6):383
Characterizing variability of electronic health record-driven phenotype definitions.36474423 · Brandt, Pascal S, Kho, Abel, Luo, Yuan et al.2023 · 16 citationsJournal of the American Medical Informatics Association : JAMIA. 2023;30(3):427-437
SARS-CoV-2 Reinfection is Preceded by Unique Biomarkers and Related to Initial Infection Timing and Severity: an N3C RECOVER EHR-Based Cohort Study.36656776 · Hadley, Emily, Yoo, Yun Jae, Patel, Saaya et al.2025 · 17 citationsmedRxiv : the preprint server for health sciences. 2023
Recommended practices and ethical considerations for natural language processing-assisted observational research: A scoping review.36478394 · Fu, Sunyang, Wang, Liwei, Moon, Sungrim et al.2023 · 27 citationsClinical and translational science. 2023;16(3):398-411
Generalisable long COVID subtypes: findings from the NIH N3C and RECOVER programmes.36563487 · Reese, Justin T, Blau, Hannah, Casiraghi, Elena et al.2023 · 169 citationsEBioMedicine. 2023;87:104413
Long COVID Risk and Pre-COVID Vaccination: An EHR-Based Cohort Study from the RECOVER Program.36238713 · Brannock, M Daniel, Chew, Robert F, Preiss, Alexander J et al.2024 · 31 citationsmedRxiv : the preprint server for health sciences. 2022
Analyzing historical diagnosis code data from NIH N3C and RECOVER Programs using deep learning to determine risk factors for Long Covid2210.02490v1 · Saurav Sengupta, Johanna Loomba, Suchetha Sharma et al.2022 · 9 citationsarXiv
FHIR-Ontop-OMOP: Building clinical knowledge graphs in FHIR RDF with the OMOP Common data Model.36089199 · Xiao, Guohui, Pfaff, Emily, Prud'hommeaux, Eric et al.2022 · 36 citationsJournal of biomedical informatics. 2022;134:104201
Coding Long COVID: Characterizing a new disease through an ICD-10 lens.36093345 · Pfaff, Emily R, Madlock-Brown, Charisse, Baratta, John M et al.2025 · 188 citationsmedRxiv : the preprint server for health sciences. 2022
Risk Factors Associated with Post-Acute Sequelae of SARS-CoV-2 in an EHR Cohort: A National COVID Cohort Collaborative (N3C) Analysis as part of the NIH RECOVER program.36032983 · Hill, Elaine, Mehta, Hemal, Sharma, Suchetha et al.2025 · 31 citationsmedRxiv : the preprint server for health sciences. 2022
Generalizable Long COVID Subtypes: Findings from the NIH N3C and RECOVER Programs.35665012 · Reese, Justin T, Blau, Hannah, Bergquist, Timothy et al.2026 · 28 citationsmedRxiv : the preprint server for health sciences. 2022
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