GE
Gonca Erdemci-Tandogan
physics.bio-phcond-mat.softq-bio.BMdevelopmental biologyDrosophilaModels, Biologicalq-bio.CBbiophysicsBoundary formationCell Shape
On Valency
published · living versionsW_bvpckad2·v1 · currentpublished
RNA-like Polyelectrolyte in a Viral Capsid: Molecular Dynamics with Explicit Electrostatic Interactions
with Xintong Jiang, Colin Denniston
1 version
W_4v5myjyz·v2published
Preprints & journals
26 papers in the corpus · 2013–2026RNA-like Polyelectrolyte in a Viral Capsid: Molecular Dynamics with Explicit Electrostatic Interactions2608.27825v1 · Xintong Jiang, Colin Denniston, Gonca Erdemci-Tandogan2026 · 0 citationsarXivon Valency
Cell intrinsic dynamics guide neuroblast ingression independent of tissue fluidity10.64898/2026.08.03.742586v1 · Green, D., Etemadi, E., Enright, L. et al.2026 · 0 citationsbioRxiv
Cell intrinsic dynamics guide neuroblast ingression independent of tissue fluidity2608.02885v1 · David Green, Ermia Etemadi, Lauren Enright et al.2026 · 0 citationsarXiv
E-cadherin clustering as a regulator of morphogenesis10.64898/2026.04.20.719762v1 · Lerchbaumer, G., Simoes, S., Etemadi, E. et al.2026 · 1 citationbioRxiv
Cell divisions both challenge and refine tissue boundaries in the Drosophila embryo.41560528 · Castle, Veronica, Miles, Merdeka, Perez-Vicente, Rafael et al.2026 · 3 citationsDevelopment (Cambridge, England). 2026;153(4)
Living Capillary Bridges2510.14518v1 · Tytti Karki, Senna Luntama, Yasamin Modabber et al.2025 · 0 citationsarXiv
Myosin waves and a mechanical asymmetry guide the oscillatory migration of Drosophila cardiac progenitors.37295436 · Balaghi, Negar, Erdemci-Tandogan, Gonca, McFaul, Christopher et al.2023 · 15 citationsDevelopmental cell. 2023;58(14):1299-1313.e5
PyJAMAS: open-source, multimodal segmentation and analysis of microscopy images.34390579 · Fernandez-Gonzalez, Rodrigo, Balaghi, Negar, Wang, Kelly et al.2023 · 23 citationsBioinformatics (Oxford, England). 2022;38(2):594-596
3D viscoelastic drag forces contribute to cell shape changes during organogenesis in the zebrafish embryo.34273601 · Sanematsu, Paula C, Erdemci-Tandogan, Gonca, Patel, Himani et al.2022 · 24 citationsCells & development. 2021;168:203718
Myosin cables control the timing of tissue internalization in the Drosophila embryo.34271226 · Yu, Jessica C, Balaghi, Negar, Erdemci-Tandogan, Gonca et al.2022 · 10 citationsCells & development. 2021;168:203721
Effect of cellular rearrangement time delays on the rheology of vertex models for confluent tissues.34097706 · Erdemci-Tandogan, Gonca, Manning, M Lisa2021 · 38 citationsPLoS computational biology. 2021;17(6):e1009049
The Cell Adaptation Time Sets a Minimum Length Scale for Patterned Substrates.33130122 · Pinto, Diogo E P, Erdemci-Tandogan, Gonca, Manning, M Lisa et al.2021 · 7 citationsBiophysical journal. 2020;119(11):2299-2306
Anisotropy links cell shapes to tissue flow during convergent extension.32467168 · Wang, Xun, Merkel, Matthias, Sutter, Leo B et al.2020 · 176 citationsProceedings of the National Academy of Sciences of the United States of America. 2020;117(24):13541-13551
Cytokinetic bridge triggers de novo lumen formation in vivo.32152267 · Rathbun, L I, Colicino, E G, Manikas, J et al.2020 · 43 citationsNature communications. 2020;11(1):1269
Linear and nonlinear mechanical responses can be quite different in models for biological tissues.31984411 · Sahu, Preeti, Kang, Janice, Erdemci-Tandogan, Gonca et al.2020 · 22 citationsSoft matter. 2020;16(7):1850-1856
Nonlinear analysis of the fluid-solid transition in a model for ordered biological tissues1905.12714v1 · Preeti Sahu, Janice Kang, Gonca Erdemci-Tandogan et al.2019 · 4 citationsarXiv
Tissue Flow Induces Cell Shape Changes During Organogenesis.30455043 · Erdemci-Tandogan, Gonca, Clark, Madeline J, Amack, Jeffrey D et al.2019 · 22 citationsBiophysical journal. 2018;115(11):2259-2270
The effect of RNA stiffness on the self-assembly of virus particles.29235442 · Li, Siyu, Erdemci-Tandogan, Gonca, van der Schoot, Paul et al.2018 · 24 citationsJournal of physics. Condensed matter : an Institute of Physics journal. 2018;30(4):044002
RNA Base Pairing Determines the Conformations of RNA Inside Spherical Viruses.29219580 · Erdemci-Tandogan, Gonca, Orland, Henri, Zandi, Roya2018 · 17 citationsPhysical review letters. 2017;119(18):188102
Impact of a nonuniform charge distribution on virus assembly.28950450 · Li, Siyu, Erdemci-Tandogan, Gonca, Wagner, Jef et al.2018 · 35 citationsPhysical review. E. 2017;96(2-1):022401
In vitro protease cleavage and computer simulations reveal the HIV-1 capsid maturation pathway.27958264 · Ning, Jiying, Erdemci-Tandogan, Gonca, Yufenyuy, Ernest L et al.2018 · 53 citationsNature communications. 2016;7:13689
Effects of RNA branching on the electrostatic stabilization of viruses.27627336 · Erdemci-Tandogan, Gonca, Wagner, Jef, van der Schoot, Paul et al.2018 · 40 citationsPhysical review. E. 2016;94(2-1):022408
Functional analysis of the N-terminal basic motif of a eukaryotic satellite RNA virus capsid protein in replication and packaging.27193742 · Sivanandam, Venkatesh, Mathews, Deborah, Garmann, Rees et al.2018 · 18 citationsScientific reports. 2016;6:26328
Role of Genome in the Formation of Conical Retroviral Shells.27128962 · Erdemci-Tandogan, Gonca, Wagner, Jef, van der Schoot, Paul et al.2018 · 10 citationsThe journal of physical chemistry. B. 2016;120(26):6298-305
Adsorption of annealed branched polymers on curved surfaces.26574170 · Wagner, Jef, Erdemci-Tandogan, Gonca, Zandi, Roya2016 · 18 citationsJournal of physics. Condensed matter : an Institute of Physics journal. 2015;27(49):495101
RNA topology remolds electrostatic stabilization of viruses.24730874 · Erdemci-Tandogan, Gonca, Wagner, Jef, van der Schoot, Paul et al.2015 · 58 citationsPhysical review. E, Statistical, nonlinear, and soft matter physics. 2014;89(3):032707
Career total: 36 works. 26 are in this corpus.
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