BM
Bjoern Menze
cs.CVeess.IVcs.LGcs.AIAlgorithmsDeep LearningMagnetic Resonance Imagingphysics.med-phMRIdeep learning
On Valency
published · living versionsW_ctyr365s·v1 · currentpublished
Identifying the Best Machine Learning Algorithms for Brain Tumor Segmentation, Progression Assessment, and Overall Survival Prediction in the BRATS Challenge
with Spyridon Bakas, Mauricio Reyes, Andras Jakab, Stefan Bauer +422
1 version
W_j5haz7ag·v1published
W_z8wecm87·v1published
Preprints & journals
361 papers in the corpus · 2006–2026A Differentiable Brain Tumor Mass Effect Solver2610.06097v1 · Marco L. Wittrich, Michal Balcerak, Lucas Zimmer et al.2026 · 0 citationsarXiv
RT-Super: Learning Tumor Segmentation from Longitudinal Images and Reports2609.35637v1 · Pedro R. A. S. Bassi, Wenxuan Li, Hanxue Gu et al.2026 · 0 citationsarXiv
NV-Reason-CT: 3D Visual Language Model for CT Analysis2609.27511v2 · Andriy Myronenko, Dong Yang, Yucheng Tang et al.2026 · 0 citationsarXiv
PREDICT-GBM: A multicenter platform advancing personalized glioblastoma radiotherapy planning.42717239 · Zimmer, Lucas, Weidner, Jonas, Balcerak, Michal et al.2026 · 0 citationsNPJ digital medicine. 2026;9(1)
How Sex, Age, Adiposity, and Smoking Shape the Human Rib Cage: Evidence from 26,275 Whole-Body MRIs across the German National Cohort (NAKO)10.64898/2026.09.01.26361964v1 · Aicher, A., Graf, R., Kirschke, J. et al.2026 · 0 citationsmedRxiv
Observation-Conditioned Latent Energy Priors for Sparse Implicit Neural Shape Completion2609.03694v1 · Paul Buschl, Ezequiel de la Rosa, Julia Wolleb et al.2026 · 0 citationsarXiv
An Imaging-Informed Reaction-Diffusion Model of Infarct Growth2608.20935v1 · Muhammad Hussnain Abbas, Michal Balcerak, Asif Ahmad et al.2026 · 0 citationsarXiv
X-LMC: Cross-View Spatiotemporal Collateral Circulation Scoring from DSA2608.18986v1 · Maedeh Hafezi Moghadas, Hakim Baazaoui, Lukas Bastian Otto et al.2026 · 0 citationsarXiv
Large-Scale Multi-Cancer Detection by Learning Segmentation from Reports.42523553 · Bassi, Pedro R A S, Zhou, Xinze, Li, Wenxuan et al.2026 · 0 citationsResearch square. 2026
Projected Energy Matching for Generative 3D Priors2607.07749v2 · Daniel Barco, Michal Balcerak, Suprosanna Shit et al.2026 · 0 citationsarXiv
Intracranial Aneurysm Classification and Segmentation via Tri-Axial ROI and Multi-Task Learning2606.26706v2 · Pengcheng Shi, Kaiyuan Yang, Houjing Huang et al.2026 · 0 citationsarXiv
Ratio of Left Atrial and Ventricular Volume as New Marker of Atrial Cardiopathy and Stroke Risk.42312392 · Deseoe, Julian, Hänsel, Martin, Herzog, Lisa et al.2026 · 0 citationsStroke. 2026;57(8):2426-2436
Leptomeningeal Collateral Detection on DSA via Vessel-Graph Neural Networks2606.14828v1 · Junyong Cao, Hakim Baazaoui, Chinmay Prabhakar et al.2026 · 0 citationsarXiv
vesselFM-CT: Segmenting All Blood Vessels in CT Images for System-Level Cardiovascular Analysis2606.09400v1 · Bastian Wittmann, Chinmay Prabhakar, Suprosanna Shit et al.2026 · 0 citationsarXiv
Seeing Is Believing - FAIR Metadata for Medical Imaging Data in the SPHN Semantic Interoperability Framework.42174775 · Ter Voert, Edwin, Witte, Harald, Touré, Vasundra et al.2026 · 0 citationsStudies in health technology and informatics. 2026;336:7-11
A deep-learning framework reveals whole-body perturbations at cell level.42162424 · Kaltenecker, Doris, Horvath, Izabela, Al-Maskari, Rami et al.2026 · 4 citationsNature. 2026;655(8124):1016-1026
Brain tumor segmentation in Sub-Saharan Africa patient population: The BraTS-Africa challenge.42094719 · Adewole, Maruf, Rudie, Jeffrey D, Gbadamosi, Anu et al.2026 · 41 citationsNeuro-oncology advances. 2026;8(1):vdag082
Sparse Representation Learning for Vessels2605.01382v1 · Chinmay Prabhakar, Bastian Wittmann, Paul Buschl et al.2026 · 0 citationsarXiv
The Ischemic Stroke Lesion Segmentation Challenge (ISLES)'24 Dataset: A Multimodal Stroke Imaging Dataset with Hyperacute CT, Acute Postinterventional MRI, and 3-month Clinical Outcomes.42017802 · Riedel, Evamaria Olga, de la Rosa, Ezequiel, Baran, The Anh et al.2026 · 0 citationsRadiology. Artificial intelligence. 2026;8(3):e250603
RadAgent: A tool-using AI agent for stepwise interpretation of chest computed tomography2604.15231v2 · M'elanie Roschewitz, Kenneth Styppa, Yitian Tao et al.2026 · 0 citationsarXiv
In search of truth: evaluating concordance of AI-based anatomy segmentation models.41948672 · Giebeler, Lena, Krishnaswamy, Deepa, Clunie, David et al.2026 · 1 citationJournal of medical imaging (Bellingham, Wash.). 2026;13(6):062204
Graph Energy Matching: Transport-Aligned Energy-Based Modeling for Graph Generation2603.23398v3 · Michal Balcerak, Suprosanna Shit, Chinmay Prabhakar et al.2026 · 0 citationsarXiv
VesselTok: Tokenizing Vessel-like 3D Biomedical Graph Representations for Reconstruction and Generation2603.18797v2 · Chinmay Prabhakar, Bastian Wittmann, Tamaz Amiranashvili et al.2026 · 0 citationsarXiv
MRI2Qmap: multi-parametric quantitative mapping with MRI-driven denoising priors2603.11316v1 · Mohammad Golbabaee, Matteo Cencini, Carolin Pirkl et al.2026 · 0 citationsarXiv
SigVLP: Sigmoid Volume-Language Pre-Training for Self-Supervised CT-Volume Adaptive Representation Learning2602.21735v1 · Jiayi Wang, Hadrien Reynaud, Ibrahim Ethem Hamamci et al.2026 · 0 citationsarXiv
VariViT: A Vision Transformer for Variable Image Sizes2602.14615v1 · Aswathi Varma, Suprosanna Shit, Chinmay Prabhakar et al.2026 · 0 citationsarXiv
Enhancing efficiency in pediatric brain tumor segmentation using a pathologically diverse single-center clinical dataset.41890357 · Piffer, Arianna, Buchner, Josef Alois, Gennari, Antonio Giulio et al.2026 · 2 citationsNeuro-oncology advances. 2026;8(1):vdag024
Generalist foundation models from a multimodal dataset for 3D computed tomography.41680439 · Hamamci, Ibrahim Ethem, Er, Sezgin, Wang, Chenyu et al.2026 · 106 citationsNature biomedical engineering. 2026;10(8):1610-1628
GlioMODA: Robust glioma segmentation in clinical routine.41841144 · Canisius, Julian, Buchner, Josef, Rosier, Marcel et al.2026 · 4 citationsNeuro-oncology advances. 2026;8(1):vdag034
Tissue-scale mapping reveals a central role of hepatoblasts in the regulation of fetal liver hematopoiesis and stem cell maintenance.41679310 · Vijaykumar, Anjali, Helbling, Patrick M, Thelen, Flavian et al.2026 · 3 citationsDevelopmental cell. 2026;61(4):901-918.e4
PARASIDE: An automatic paranasal sinus segmentation and structure analysis tool for magnetic resonance imaging.41619365 · Möller, Hendrik, Krautschick, Lukas, Graf, Robert et al.2026 · 1 citationComputers in biology and medicine. 2026;204:111511
The 2024 Brain Tumor Segmentation Challenge Meningioma Radiotherapy (BraTS-MEN-RT) dataset.41593091 · LaBella, Dominic, Schumacher, Katherine, Mix, Michael et al.2026 · 2 citationsScientific data. 2026;13(1)
ProGiDiff: Prompt-Guided Diffusion-Based Medical Image Segmentation2601.16060v1 · Yuan Lin, Murong Xu, Marc Holle et al.2026 · 0 citationsarXiv
Towards contrast- and pathology-agnostic clinical fetal brain MRI segmentation using SynthSeg.41548822 · Shang, Ziyao, Kaandorp, Misha, Payette, Kelly et al.2026 · 3 citationsNeuroImage. 2026;327:121729
Deep learning enables diagnosis of atrial cardiomyopathy from routine 12-lead electrocardiogram10.64898/2026.01.12.26343962v2 · Deseö, J., de la Rosa, E., Hänsel, M. et al.2026 · 0 citationsmedRxiv
The ratio of left atrial and ventricular volume as new marker of atrial cardiopathy with relevance for stroke risk and cognitive dysfunction10.64898/2025.12.18.25342359v2 · Deseoe, J., Haensel, M., Herzog, L. et al.2025 · 1 citationmedRxiv
Optimizing Rank for High-Fidelity Implicit Neural Representations2512.14366v3 · Julian McGinnis, Florian A. Holzl, Suprosanna Shit et al.2025 · 0 citationsarXiv
See More, Change Less: Anatomy-Aware Diffusion for Contrast Enhancement2512.07251v1 · Junqi Liu, Zejun Wu, Pedro R. A. S. Bassi et al.2025 · 0 citationsarXiv
Hide-and-Seek Attribution: Weakly Supervised Segmentation of Vertebral Metastases in CT2512.06849v2 · Matan Atad, Alexander W. Marka, Lisa Steinhelfer et al.2025 · 0 citationsarXiv
The MICCAI Federated Tumor Segmentation (FeTS) Challenge 2024: Efficient and Robust Aggregation Methods for Federated Learning2512.06206v1 · Akis Linardos, Sarthak Pati, Ujjwal Baid et al.2025 · 5 citationsMachine.Learning.for.Biomedical.Imaging. 3 (2025)
Better Tokens for Better 3D: Advancing Vision-Language Modeling in 3D Medical Imaging2510.20639v1 · Ibrahim Ethem Hamamci, Sezgin Er, Suprosanna Shit et al.2025 · 2 citationsarXiv
RadDiagSeg-M: A Vision Language Model for Joint Diagnosis and Multi-Target Segmentation in Radiology2510.18188v1 · Chengrun Li, Corentin Royer, Haozhe Luo et al.2025 · 0 citationsarXiv
Scaling Artificial Intelligence for Multi-Tumor Early Detection with More Reports, Fewer Masks2510.14803v1 · Pedro R. A. S. Bassi, Xinze Zhou, Wenxuan Li et al.2025 · 0 citationsarXiv
Circle of Willis Centerline Graphs: A Dataset and Baseline Algorithm2510.13720v1 · Fabio Musio, Norman Juchler, Kaiyuan Yang et al.2025 · 2 citationsarXiv
PREDICT-GBM: A multi-center platform to advance personalized glioblastoma radiotherapy planning2509.13360v2 · L. Zimmer, J. Weidner, M. Balcerak et al.2025 · 0 citationsarXiv
MInDI-3D: Iterative Deep Learning in 3D for Sparse-view Cone Beam Computed Tomography2508.09616v2 · Daniel Barco, Marc Stadelmann, Martin Oswald et al.2025 · 0 citationsarXiv
DeepISLES: a clinically validated ischemic stroke segmentation model from the ISLES'22 challenge.40783484 · de la Rosa, Ezequiel, Reyes, Mauricio, Liew, Sook-Lei et al.2025 · 23 citationsNature communications. 2025;16(1):7357
In Vivo Network-Level Cerebrovascular Mapping Reveals the Impact of Flow Topology on Capillary Stalls After Stroke.40766517 · Glandorf, Lukas, Droux, Jeanne, Jessen, Etienne et al.2025 · 5 citationsbioRxiv : the preprint server for biology. 2025
Enhancing efficiency in paediatric brain tumour segmentation using a pathologically diverse single-center clinical dataset2507.22152v2 · A. Piffer, J. A. Buchner, A. G. Gennari et al.2025 · 0 citationsarXiv
CADS: A Comprehensive Anatomical Dataset and Segmentation for Whole-Body Anatomy in Computed Tomography2507.22953v1 · Murong Xu, Tamaz Amiranashvili, Fernando Navarro et al.2025 · 0 citationsarXiv
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