EB
Emmanuel Brun
physics.med-phphysics.opticsRadiation DosageSynchrotronsContrast Mediaphysics.app-phCartilage, Articularcs.CVcs.NAeess.IV
On Valency
published · living versionsW_eve3rarn·v1 · currentpublished
PyHST2: an hybrid distributed code for high speed tomographic reconstruction with iterative reconstruction and a priori knowledge capabilities
with Alessandro Mirone, Emmanuelle Gouillart, Paul Tafforeau, Jerome Kieffer
1 version
Preprints & journals
52 papers in the corpus · 2001–2026Clinical potential of phase contrast imaging in dentomaxillofacial radiology compared to cone beam CT.42203608 · Bazot, Kim, Mangione, Francesca, Capdeville, Clément et al.2026 · 0 citationsDiagnostic and interventional imaging. 2026;107(10):352-354
On the optimization of the geometric pattern for structured illumination based X-ray phase contrast and dark-field imaging: a simulation study and its experimental validation.42008239 · Magnin, Clara, Quénot, Laurene, Cenda, Dan Mihai et al.2026 · 1 citationJournal of synchrotron radiation. 2026;33(Pt 3):806-817
Membrane stepping optimization in Modulation Based Imaging2511.14886v1 · Paola Perion, Clara Magnin, Fulvia Arfelli et al.2025 · 0 citationsarXiv
How X-ray dark-field imaging relates to small-angle X-ray scattering measurements.40765975 · Magnin, Clara, Fernández Martínez, Manuel, Mihai Cenda, Dan et al.2025 · 4 citationsJournal of applied crystallography. 2025;58(Pt 4):1347-1354
On the optimisation of the geometric pattern for structured illumination based X-ray phase contrast and dark field imaging: A simulation study and its experimental validation2504.10665v1 · Clara Magnin, Laurene Quenot, Dan Mihai Cenda et al.2025 · 2 citationsarXiv
A self-healing radiopaque hyaluronic acid hydrogel as a new injectable biomaterial for precision medicine in osteoarthritis.40213675 · Said, Moustoifa, Tavakoli, Clément, Dumot, Chloé et al.2025 · 11 citationsTheranostics. 2025;15(9):4054-4073
Review and experimental comparison of speckle-tracking algorithms for X-ray phase contrast imaging.39689035 · Celestre, Rafael, Quénot, Laurène, Ninham, Christopher et al.2025 · 6 citationsJournal of synchrotron radiation. 2025;32(Pt 1):180-199
Dark-field and directional dark-field on low-coherence x ray sources with random mask modulations: validation with SAXS anisotropy measurements.37966732 · Magnin, Clara, Quénot, Lauréne, Bohic, Sylvain et al.2023 · 10 citationsOptics letters. 2023;48(22):5839-5842
Virtual histology of Alzheimer's disease: Biometal entrapment within amyloid-β plaques allows for detection via X-ray phase-contrast imaging.37574159 · Chourrout, Matthieu, Sandt, Christophe, Weitkamp, Timm et al.2023 · 12 citationsActa biomaterialia. 2023;170:260-272
4D nanoimaging of early age cement hydration.37156776 · Shirani, Shiva, Cuesta, Ana, Morales-Cantero, Alejandro et al.2023 · 66 citationsNature communications. 2023;14(1):2652
A novel injectable radiopaque hydrogel with potent properties for multicolor CT imaging in the context of brain and cartilage regenerative therapy.37131613 · Said, Moustoifa, Tavakoli, Clément, Dumot, Chloé et al.2023 · 2 citationsbioRxiv : the preprint server for biology. 2023
Human fetal virtual histology with X-ray phase contrast imaging10.1101/2023.04.18.537316v1 · Verot, P.-L., Charnay, L., Tavakoli, C. et al.2023 · 0 citationsbioRxiv
High-resolution synchrotron K-edge subtraction CT allows tracking and quantifying therapeutic cells and their scaffold in a rat model of focal cerebral injury and can serve as a reference for spectral photon counting CT.36793350 · Tavakoli, Clément, Cuccione, Elisa, Dumot, Chloé et al.2023 · 9 citationsNanotheranostics. 2023;7(2):176-186
Use of metal-based contrast agents for in vivo MR and CT imaging of phagocytic cells in neurological pathologies.36272462 · Wiart, Marlène, Tavakoli, Clément, Hubert, Violaine et al.2022 · 20 citationsJournal of neuroscience methods. 2023;383:109729
Brain virtual histology with X-ray phase-contrast tomography Part II:3D morphologies of amyloid-β plaques in Alzheimer's disease models.35414980 · Chourrout, Matthieu, Roux, Margaux, Boisvert, Carlie et al.2024 · 17 citationsBiomedical optics express. 2022;13(3):1640-1653
Brain virtual histology with X-ray phase-contrast tomography Part I: whole-brain myelin mapping in white-matter injury models.35415001 · Chourrout, Matthieu, Rositi, Hugo, Ong, Elodie et al.2024 · 22 citationsBiomedical optics express. 2022;13(3):1620-1639
New imaging tools for mouse models of osteoarthritis.35129777 · Drevet, S, Favier, B, Lardy, B et al.2022 · 20 citationsGeroScience. 2022;44(2):639-650
In Vitro Preparation of Actively Maturing Bovine Articular Cartilage Explants for X-Ray Phase Contrast Imaging.35156661 · Bissardon, Caroline, Zhang, Yadan, Rougé Labriet, Hélène et al.2022 · 0 citationsJournal of visualized experiments : JoVE. 2022(179)
Evaluation of simulators for x-ray speckle-based phase contrast imaging.34412046 · Quénot, L, Brun, E, Létang, J M et al.2021 · 9 citationsPhysics in medicine and biology. 2021;66(17)
Multimodal Imaging with NanoGd Reveals Spatiotemporal Features of Neuroinflammation after Experimental Stroke.34197055 · Hubert, Violaine, Hristovska, Ines, Karpati, Szilvia et al.2022 · 29 citationsAdvanced science (Weinheim, Baden-Wurttemberg, Germany). 2021;8(17):e2101433
Directional dark-field implicit x-ray speckle tracking using an anisotropic-diffusion Fokker-Planck equation2105.10693v2 · Konstantin M. Pavlov, David M. Paganin, Kaye S. Morgan et al.2021 · 25 citationsPhys. Rev. A 104, 053505 (2021)
Calcified cartilage revealed in whole joint by X-ray phase contrast imaging.36474982 · Broche, Ludovic, Favier, Bertrand, Rougé-Labriet, Hélène et al.2022 · 13 citationsOsteoarthritis and cartilage open. 2021;3(2):100168
Synchrotron phase-contrast imaging applied to the anatomical study of the hand and its vascularization.33686643 · Solé Cruz, Eva, Mercier, Alexis, Suuronen, Jussi-Petteri et al.2021 · 4 citationsJournal of anatomy. 2021;239(2):536-543
Comparison of X-ray speckle-based imaging deflection retrieval algorithms for the optimization of radiation dose.32268312 · Rouge-Labriet, Helene, Quenot, Laurene, Bohic, Sylvain et al.2021 · 11 citationsPhysics in medicine and biology. 2021;66(6):065005
Synchrotron X-Ray Boost Delivered by Microbeam Radiation Therapy After Conventional X-Ray Therapy Fractionated in Time Improves F98 Glioma Control.32088292 · Potez, Marine, Bouchet, Audrey, Flaender, Mélanie et al.2021 · 31 citationsInternational journal of radiation oncology, biology, physics. 2020;107(2):360-369
X-ray Phase Contrast osteo-articular imaging: a pilot study on cadaveric human hands.32024864 · Rougé-Labriet, Hélène, Berujon, Sebastien, Mathieu, Hervé et al.2020 · 14 citationsScientific reports. 2020;10(1):1911
X-ray Multimodal Intrinsic-Speckle-Tracking1911.06814v2 · Konstantin M. Pavlov, David M. Paganin, Heyang Li et al.2019 · 33 citationsJournal of Optics 22 125604 (2020)
Single-shot x-ray speckle-based imaging of a single-material object1908.00411v2 · Konstantin M. Pavlov, Heyang (Thomas) Li, David M. Paganin et al.2019 · 45 citationsPhys. Rev. Applied 13, 054023 (2020)
Significant dose reduction using synchrotron radiation computed tomography: first clinical case and application to high resolution CT exams.30131501 · Labriet, H, Nemoz, C, Renier, M et al.2019 · 21 citationsScientific reports. 2018;8(1):12491
Single-Image Geometric-Flow X-Ray Speckle Tracking1808.00456v2 · David M. Paganin, Helene Labriet, Emmanuel Brun et al.2018 · 64 citationsPhys. Rev. A 98, 053813 (2018)
Quantitative Assessment of Degenerative Cartilage and Subchondral Bony Lesions in a Preserved Cadaveric Knee: Propagation-Based Phase-Contrast CT Versus Conventional MRI and CT.29629804 · Geith, Tobias, Brun, Emmanuel, Mittone, Alberto et al.2019 · 17 citationsAJR. American journal of roentgenology. 2018;210(6):1317-1322
A method for high-energy, low-dose mammography using edge illumination x-ray phase-contrast imaging.27893445 · Diemoz, Paul C, Bravin, Alberto, Sztrókay-Gaul, Anikó et al.2017 · 30 citationsPhysics in medicine and biology. 2016;61(24):8750-8761
Detection of Post-Therapeutic Effects in Breast Carcinoma Using Hard X-Ray Index of Refraction Computed Tomography - A Feasibility Study.27362638 · Grandl, Susanne, Sztrókay-Gaul, Anikó, Mittone, Alberto et al.2017 · 3 citationsPloS one. 2016;11(6):e0158306
Revealing metallic ink in Herculaneum papyri.27001841 · Brun, Emmanuel, Cotte, Marine, Wright, Jonathan et al.2016 · 64 citationsProceedings of the National Academy of Sciences of the United States of America. 2016;113(14):3751-4
A Novel and Sensitive Approach for the Evaluation of Liver Ischemia-Reperfusion Injury After Liver Transplantation.26488374 · Brandlhuber, Martina, Armbruster, Marco, Zupanc, Blaž et al.2016 · 8 citationsInvestigative radiology. 2016;51(3):170-6
In vivo pink-beam imaging and fast alignment procedure for rat brain tumor radiation therapy.26698083 · Nemoz, Christian, Kibleur, Astrid, Hyacinthe, Jean Noël et al.2016 · 12 citationsJournal of synchrotron radiation. 2016;23(1):339-43
High contrast microstructural visualization of natural acellular matrices by means of phase-based x-ray tomography.26657471 · Hagen, Charlotte K, Maghsoudlou, Panagiotis, Totonelli, Giorgia et al.2016 · 42 citationsScientific reports. 2015;5:18156
Single-image phase retrieval using an edge illumination X-ray phase-contrast imaging setup.26134813 · Diemoz, Paul C, Vittoria, Fabio A, Hagen, Charlotte K et al.2015 · 49 citationsJournal of synchrotron radiation. 2015;22(4):1072-7
A single-image method for x-ray refractive index CT.25856228 · Mittone, A, Gasilov, S, Brun, E et al.2016 · 4 citationsPhysics in medicine and biology. 2015;60(9):3433-40
Revealing letters in rolled Herculaneum papyri by X-ray phase-contrast imaging.25603114 · Mocella, Vito, Brun, Emmanuel, Ferrero, Claudio et al.2015 · 137 citationsNature communications. 2015;6:5895
A dictionary learning approach with overlap for the low dose computed tomography reconstruction and its vectorial application to differential phase tomography.25531987 · Mirone, Alessandro, Brun, Emmanuel, Coan, Paola2015 · 21 citationsPloS one. 2014;9(12):e114325
Breast tumor segmentation in high resolution x-ray phase contrast analyzer based computed tomography.25370635 · Brun, E, Grandl, S, Sztrókay-Gaul, A et al.2015 · 6 citationsMedical physics. 2014;41(11):111902
Cartilage and soft tissue imaging using X-rays: propagation-based phase-contrast computed tomography of the human knee in comparison with clinical imaging techniques and histology.24825531 · Horng, Annie, Brun, Emmanuel, Mittone, Alberto et al.2015 · 82 citationsInvestigative radiology. 2014;49(9):627-34
Tomographic reconstruction of the refractive index with hard X-rays: an efficient method based on the gradient vector-field approach.24663861 · Gasilov, Sergei, Mittone, Alberto, Brun, Emmanuel et al.2015 · 14 citationsOptics express. 2014;22(5):5216-27
On the possibility of quantitative refractive-index tomography of large biomedical samples with hard X-rays.24049673 · Gasilov, Sergei, Mittone, Alberto, Brun, Emmanuel et al.2013 · 15 citationsBiomedical optics express. 2013;4(9):1512-8
An efficient numerical tool for dose deposition prediction applied to synchrotron medical imaging and radiation therapy.23955043 · Mittone, Alberto, Baldacci, Fabien, Bravin, Alberto et al.2014 · 23 citationsJournal of synchrotron radiation. 2013;20(Pt 5):785-92
PyHST2: an hybrid distributed code for high speed tomographic reconstruction with iterative reconstruction and a priori knowledge capabilities1306.1392v1 · Alessandro Mirone, Emmanuelle Gouillart, Emmanuel Brun et al.2013 · 526 citationsarXivon Valency
Synchrotron microbeam radiation therapy induces hypoxia in intracerebral gliosarcoma but not in the normal brain.23731617 · Bouchet, Audrey, Lemasson, Benjamin, Christen, Thomas et al.2014 · 97 citationsRadiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology. 2013;108(1):143-8
High-resolution, low-dose phase contrast X-ray tomography for 3D diagnosis of human breast cancers.23091003 · Zhao, Yunzhe, Brun, Emmanuel, Coan, Paola et al.2013 · 195 citationsProceedings of the National Academy of Sciences of the United States of America. 2012;109(45):18290-4
High-resolution breast tomography at high energy: a feasibility study of phase contrast imaging on a whole breast.22516937 · Sztrókay, A, Diemoz, P C, Schlossbauer, T et al.2012 · 61 citationsPhysics in medicine and biology. 2012;57(10):2931-42
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