JV
Joshua T. Vogelstein
stat.MLcs.LGneurosciencestat.MEq-bio.NCq-bio.QMstat.APcs.DCcs.CVAlgorithms
On Valency
published · living versionsW_qwe58ep4·v1 · currentpublished
The Open Connectome Project Data Cluster: Scalable Analysis and Vision for High-Throughput Neuroscience
with Randal Burns, William Gray Roncal, Dean Kleissas, Kunal Lillaney +15
1 version
Preprints & journals
208 papers in the corpus · 1997–2026Inference for Multiple Heterogeneous Networks with a Common Invariant Subspace.34650343 · Arroyo, Jesús, Athreya, Avanti, Cape, Joshua et al.2026 · 41 citationsJournal of machine learning research : JMLR. 2021;22(141):1-49
Supervised Dimensionality Reduction for Big Data1709.01233v9 · Joshua T. Vogelstein, Eric Bridgeford, Minh Tang et al.2017 · 81 citationsNature Communications, volume 12, Article number 2872 (2021)
Statistically valid explainable black-box machine learning: applications in sex classification across species using brain imaging.41989998 · Liu, Tingshan, Dey, Jayanta, Xu, Beiya et al.2026 · 0 citationsPloS one. 2026;21(4):e0346575
Accurate and efficient data-driven psychiatric assessment using machine learning.41526920 · Konishcheva, Kseniia, Leventhal, Bennett L, Koyama, Maki et al.2026 · 0 citationsBMC medical informatics and decision making. 2026;26(1):40
Computing Scalable Multivariate Glocal Invariants of Large (Brain-) Graphs1312.4318v1 · Disa Mhembere, William Gray Roncal, Daniel Sussman et al.2013 · 21 citationsarXiv
Statistically valid explainable black-box machine learning: applications in sex classification across species using brain imaging10.1101/2025.07.09.664026v4 · Liu, T., Dey, J., Xu, B. et al.2025 · 0 citationsbioRxiv
Is Pearson's correlation coefficient enough for functional connectivity in fMRI?41377637 · Jin, Hecheng, Ramirez, Julian S B, Byeon, Kyoungseob et al.2025 · 2 citationsImaging neuroscience (Cambridge, Mass.). 2025;3
Prospective Learning in Retrospect2507.07965v1 · Yuxin Bai, Cecelia Shuai, Ashwin De Silva et al.2025 · 0 citationsarXiv
Translating Artificial Intelligence Breakthroughs into Cancer Diagnostic Breakthroughs.40833461 · Lavista Ferres, Juan M, Fishman, Elliot K, Catmull, Ed et al.2025 · 2 citationsCancer discovery. 2025;15(10):1982-1984
Network Biomarkers of Alzheimer's Disease Risk Derived from Joint Volume and Texture Covariance Patterns in Mouse Models.39975084 · Bridgeford, Eric W, Chung, Jaewon, Anderson, Robert J et al.2025 · 1 citationbioRxiv : the preprint server for biology. 2025
AutoGMM: Automatic Gaussian Mixture Modeling in Python1909.02688v6 · Tingshan Liu, Thomas L. Athey, Benjamin D. Pedigo et al.2019 · 12 citationsarXiv
Minimizing and quantifying uncertainty in AI-informed decisions: Applications in medicine.40833408 · Curtis, Samuel D, Panda, Sambit, Li, Adam et al.2025 · 4 citationsProceedings of the National Academy of Sciences of the United States of America. 2025;122(34):e2424203122
Fragmentation signatures in cancer patients resemble those of patients with vascular or autoimmune diseases.40833414 · Curtis, Samuel D, Liu, Tingshan, Bai, Yuxin et al.2025 · 10 citationsProceedings of the National Academy of Sciences of the United States of America. 2025;122(34):e2426890122
Biological Processing Units: Leveraging an Insect Connectome to Pioneer Biofidelic Neural Architectures2507.10951v1 · Siyu Yu, Zihan Qin, Tingshan Liu et al.2025 · 1 citationarXiv
Multiscale Comparative Connectomics2011.14990v6 · Vivek Gopalakrishnan, Jaewon Chung, Eric Bridgeford et al.2020 · 1 citationarXiv
Prospective Learning: Learning for a Dynamic Future2411.00109v2 · Ashwin De Silva, Rahul Ramesh, Rubing Yang et al.2024 · 0 citationsarXiv
When no answer is better than a wrong answer: a causal perspective on batch effects10.1101/2021.09.03.458920v8 · Bridgeford, E. W., Powell, M., Kiar, G. et al.2021 · 12 citationsbioRxiv
Why experimental variation in neuroimaging should be embraced.39482294 · Kiar, Gregory, Mumford, Jeanette A, Xu, Ting et al.2024 · 15 citationsNature communications. 2024;15(1):9411
Moving beyond processing- and analysis-related variation in resting-state functional brain imaging.39103610 · Li, Xinhui, Bianchini Esper, Nathalia, Ai, Lei et al.2024 · 46 citationsNature human behaviour. 2024;8(10):2003-2017
Learning Interpretable Characteristic Kernels via Decision Forests1812.00029v4 · Sambit Panda, Cencheng Shen, Joshua T. Vogelstein2018 · 3 citationsarXiv
Universally Consistent K-Sample Tests via Dependence Measures1910.08883v5 · Sambit Panda, Cencheng Shen, Ronan Perry et al.2019 · 9 citationsStatistics and Probability Letters 216, 110278, 2025
Bisected graph matching improves automated pairing of bilaterally homologous neurons from connectomes.37409218 · Pedigo, Benjamin D, Winding, Michael, Priebe, Carey E et al.2024 · 8 citationsNetwork neuroscience (Cambridge, Mass.). 2023;7(2):522-538
Neuronal classification from network connectivity via adjacency spectral embedding.34746623 · Mehta, Ketan, Goldin, Rebecca F, Marchette, David et al.2024 · 7 citationsNetwork neuroscience (Cambridge, Mass.). 2021;5(3):689-710
hyppo: A Multivariate Hypothesis Testing Python Package1907.02088v7 · Sambit Panda, Satish Palaniappan, Junhao Xiong et al.2019 · 9 citationsarXiv
Ten Rules for Conducting Retrospective Pharmacoepidemiological Analyses: Example COVID-19 Study.34393782 · Powell, Michael, Koenecke, Allison, Byrd, James Brian et al.2024 · 8 citationsFrontiers in pharmacology. 2021;12:700776
Statistical Analysis of Data Repeatability Measures2005.11911v4 · Zeyi Wang, Eric Bridgeford, Shangsi Wang et al.2020 · 21 citationsarXiv
Robust Vertex Classification1311.5954v2 · Li Chen, Cencheng Shen, Joshua Vogelstein et al.2013 · 14 citationsIEEE Transactions on Pattern Analysis and Machine Intelligence 38(3), 578-590, 2016
Manifold Matching using Shortest-Path Distance and Joint Neighborhood Selection1412.4098v4 · Cencheng Shen, Joshua T. Vogelstein, Carey E. Priebe2014 · 21 citationsPattern Recognition Letters 92, 41-48, 2017
Sparse Projection Oblique Randomer Forests1506.03410v6 · Tyler M. Tomita, James Browne, Cencheng Shen et al.2015 · 8 citationsJournal of Machine Learning Research 21(104), 1-39, 2020
Discovering and Deciphering Relationships Across Disparate Data Modalities1609.05148v8 · Joshua T. Vogelstein, Eric Bridgeford, Qing Wang et al.2016 · 37 citationseLife 8, e41690, 2019
Network Dependence Testing via Diffusion Maps and Distance-Based Correlations1703.10136v5 · Youjin Lee, Cencheng Shen, Carey E. Priebe et al.2017 · 27 citationsBiometrika 106(4), 857-873, 2019
From Distance Correlation to Multiscale Graph Correlation1710.09768v3 · Cencheng Shen, Carey E. Priebe, Joshua T. Vogelstein2017 · 49 citationsJournal of the American Statistical Association 115(529), 280-291, 2020
The Exact Equivalence of Distance and Kernel Methods for Hypothesis Testing1806.05514v5 · Cencheng Shen, Joshua T. Vogelstein2018 · 51 citationsAStA Advances in Statistical Analysis 105(3), 385-403, 2021
Are human connectomes heritable?10.1101/2023.04.02.532875v4 · Chung, J., Bridgeford, E. W., Powell, M. et al.2023 · 0 citationsbioRxiv
Valid Two-Sample Graph Testing via Optimal Transport Procrustes and Multiscale Graph Correlation with Applications in Connectomics1911.02741v6 · Jaewon Chung, Bijan Varjavand, Jesus Arroyo et al.2019 · 7 citationsarXiv
A low-resource reliable pipeline to democratize multi-modal connectome estimation and analysis10.1101/2021.11.01.466686v2 · Chung, J., Lawrence, R., Loftus, A. et al.2021 · 3 citationsbioRxiv
Accurate and efficient data-driven psychiatric assessment using machine learningsekfw_v1 · Kseniia Konishcheva, Bennett Leventhal, Maki S. Koyama et al.2024 · 0 citationsPsyArXiv
Preserving Derivative Information while Transforming Neuronal Curves.36994162 · Athey, Thomas L, Tward, Daniel J, Mueller, Ulrich et al.2024 · 0 citationsArXiv. 2023
Preserving Derivative Information while Transforming Neuronal Curves.37034653 · Athey, Thomas L, Tward, Daniel J, Mueller, Ulrich et al.2024 · 0 citationsResearch square. 2023
First Organoid Intelligence (OI) workshop to form an OI community.36925616 · Morales Pantoja, Itzy E, Smirnova, Lena, Muotri, Alysson R et al.2024 · 55 citationsFrontiers in artificial intelligence. 2023;6:1116870
Moving Beyond Processing and Analysis-Related Variation in Neuroscience10.1101/2021.12.01.470790v3 · Li, X., Esper, N. B., Ai, L. et al.2021 · 58 citationsbioRxiv
Learning sources of variability from high-dimensional observational studies2307.13868v2 · Eric W. Bridgeford, Jaewon Chung, Brian Gilbert et al.2023 · 3 citationsarXiv
The Open Connectome Project Data Cluster: Scalable Analysis and Vision for High-Throughput Neuroscience.24401992 · Burns, Randal, Roncal, William Gray, Kleissas, Dean et al.2023 · 57 citationsScientific and statistical database management : International Conference, SSDBM ... : proceedings. International Conference on Scientific and Statistical Database Management. 2013
BrainLine: An Open Pipeline for Connectivity Analysis of Heterogeneous Whole-Brain Fluorescence Volumes.37394568 · Athey, Thomas L, Wright, Matthew A, Pavlovic, Marija et al.2023 · 1 citationNeuroinformatics. 2023;21(4):637-639
Federated causal inference in heterogeneous observational data.37553084 · Xiong, Ruoxuan, Koenecke, Allison, Powell, Michael et al.2023 · 44 citationsStatistics in medicine. 2023;42(24):4418-4439
Alpha-1 adrenergic receptor antagonists to prevent hyperinflammation and death from lower respiratory tract infection.32550250 · Koenecke, Allison, Powell, Michael, Xiong, Ruoxuan et al.2023 · 9 citationsArXiv. 2021
Dynamic Silos: Increased Modularity in Intra-organizational Communication Networks during the Covid-19 Pandemic2104.00641v6 · Tiona Zuzul, Emily Cox Pahnke, Jonathan Larson et al.2021 · 8 citationsarXiv
ReX: an integrative tool for quantifying and optimizing measurement reliability for the study of individual differences.37264147 · Xu, Ting, Kiar, Gregory, Cho, Jae Wook et al.2023 · 36 citationsNature methods. 2023;20(7):1025-1028
Generative network modeling reveals quantitative definitions of bilateral symmetry exhibited by a whole insect brain connectome.36976249 · Pedigo, Benjamin D, Powell, Mike, Bridgeford, Eric W et al.2023 · 14 citationseLife. 2023;12
The connectome of an insect brain.36893230 · Winding, Michael, Pedigo, Benjamin D, Barnes, Christopher L et al.2023 · 483 citationsScience (New York, N.Y.). 2023;379(6636):eadd9330
Career total: 566 works. 208 are in this corpus.Showing the 50 most recent.
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