DD
Daisy Ding
cs.LGstat.MLcs.AIq-bio.QMBlood Proteinscancer biologycs.CLcs.CVGenomicsq-bio.BM
On Valency
published · living versionsW_svtxnew3·v1 · currentpublished
CheXNet: Radiologist-Level Pneumonia Detection on Chest X-Rays with Deep Learning
with Pranav Rajpurkar, Jeremy Irvin, Kaylie Zhu, Brandon Yang +7
1 version
Preprints & journals
28 papers in the corpus · 2017–2026Plasma proteomic signatures of cellular aging predict human disease.42297981 · Ding, Daisy Yi, Bot, Veronica Augustina, Chen, Kenneth L et al.2026 · 15 citationsNature medicine. 2026;32(6):2060-2072
Rapid Optimization Enabled by Single-Molecule Tracking: Discovery of a Potent RUVBL1/2 Inhibitor to Evaluate the Targeting of MYC-Driven Cancers.42017951 · Zheng, Li, Park, Eugene, Lenihan, Jason et al.2026 · 0 citationsJournal of medicinal chemistry. 2026;69(10):12048-12068
Temporal and spatial composition of the tumor microenvironment predicts response to immune checkpoint inhibition in metastatic TNBC.41708895 · Greenwald, Noah F, Nederlof, Iris, Sowers, Cameron et al.2026 · 8 citationsNature cancer. 2026;7(3):435-450
Cellular Aging Signatures in the Plasma Proteome Record Human Health and Disease.41727111 · Ding, Daisy Yi, Bot, Veronica Augustina, Chen, Kenneth L et al.2026 · 2 citationsbioRxiv : the preprint server for biology. 2026
CellFluxV2: An Image Generative Foundation Model for Virtual Cell Modeling10.64898/2026.01.19.696785v1 · Zhang, Y., Su, Y., Wefers, Z. et al.2026 · 2 citationsbioRxiv
Eight decades of follow-up link life course exposures to proteomic organ ageing and longevity.40963758 · Groves, James W, Bot, Veronica Augustina, Ding, Daisy Yi et al.2025 · 7 citationsmedRxiv : the preprint server for health sciences. 2025
Disruption of the cerebrospinal fluid-plasma protein balance in cognitive impairment and aging.40665050 · Farinas, Amelia, Rutledge, Jarod, Bot, Veronica Augustina et al.2025 · 41 citationsNature medicine. 2025;31(8):2578-2589
Quantitative characterization of tissue states using multiomics and ecological spatial analysis.40169791 · Ding, Daisy Yi, Tang, Zeyu, Zhu, Bokai et al.2025 · 24 citationsNature genetics. 2025;57(4):910-921
CellFlux: Simulating Cellular Morphology Changes via Flow Matching2502.09775v3 · Yuhui Zhang, Yuchang Su, Chenyu Wang et al.2025 · 2 citationsarXiv
Temporal and spatial composition of the tumor microenvironment predicts response to immune checkpoint inhibition.39975273 · Greenwald, Noah F, Nederlof, Iris, Sowers, Cameron et al.2026 · 7 citationsbioRxiv : the preprint server for biology. 2025
CoCA: Cooperative Component Analysis2407.16870v1 · Daisy Yi Ding, Alden Green, Min Woo Sun et al.2024 · 0 citationsarXiv
Multimodal Biomedical Data Fusion Using Sparse Canonical Correlation Analysis and Cooperative Learning: A Cohort Study on COVID-19.38045288 · Er, Ahmet Gorkem, Ding, Daisy Yi, Er, Berrin et al.2024 · 14 citationsResearch square. 2023
Can large language models provide useful feedback on research papers? A large-scale empirical analysis2310.01783v1 · Weixin Liang, Yuhui Zhang, Hancheng Cao et al.2023 · 250 citationsarXiv
Machine Learning-guided Lipid Nanoparticle Design for mRNA Delivery2308.01402v2 · Daisy Yi Ding, Yuhui Zhang, Yuan Jia et al.2023 · 14 citationsarXiv
Semi-supervised Cooperative Learning for Multiomics Data Fusion2308.01458v1 · Daisy Yi Ding, Xiaotao Shen, Michael Snyder et al.2023 · 0 citationsarXiv
Molecular classification and biomarkers of clinical outcome in breast ductal carcinoma in situ: Analysis of TBCRC 038 and RAHBT cohorts.37433282 · Strand, Siri H, Rivero-Gutiérrez, Belén, Houlahan, Kathleen E et al.2026 · 4 citationsCancer cell. 2023;41(7):1381
Molecular classification and biomarkers of clinical outcome in breast ductal carcinoma in situ: Analysis of TBCRC 038 and RAHBT cohorts.36400020 · Strand, Siri H, Rivero-Gutiérrez, Belén, Houlahan, Kathleen E et al.2022 · 74 citationsCancer cell. 2022;40(12):1521-1536.e7
Cooperative learning for multiview analysis.36095183 · Ding, Daisy Yi, Li, Shuangning, Narasimhan, Balasubramanian et al.2022 · 75 citationsProceedings of the National Academy of Sciences of the United States of America. 2022;119(38):e2202113119
DCIS genomic signatures define biology and clinical outcome: Human Tumor Atlas Network (HTAN) analysis of TBCRC 038 and RAHBT cohorts10.1101/2021.06.16.448585v3 · Strand, S. H., Rivero-Gutierrez, B., Houlahan, K. E. et al.2021 · 5 citationsbioRxiv
Handling Missing Data with Graph Representation Learning2010.16418v1 · Jiaxuan You, Xiaobai Ma, Daisy Yi Ding et al.2020 · 111 citationsarXiv
Missingness as Stability: Understanding the Structure of Missingness in Longitudinal EHR data and its Impact on Reinforcement Learning in Healthcare1911.07084v1 · Scott L. Fleming, Kuhan Jeyapragasan, Tony Duan et al.2019 · 2 citationsarXiv
NGBoost: Natural Gradient Boosting for Probabilistic Prediction1910.03225v4 · Tony Duan, Anand Avati, Daisy Yi Ding et al.2019 · 312 citationsarXiv
Counterfactual Reasoning for Fair Clinical Risk Prediction1907.06260v1 · Stephen Pfohl, Tony Duan, Daisy Yi Ding et al.2019 · 30 citationsarXiv
The Effectiveness of Multitask Learning for Phenotyping with Electronic Health Records Data.30864307 · Ding, Daisy Yi, Simpson, Chloé, Pfohl, Stephen et al.2019 · 27 citationsPacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. 2019;24:18-29
Deep learning for chest radiograph diagnosis: A retrospective comparison of the CheXNeXt algorithm to practicing radiologists.30457988 · Rajpurkar, Pranav, Irvin, Jeremy, Ball, Robyn L et al.2019 · 1,447 citationsPLoS medicine. 2018;15(11):e1002686
Learning to Summarize Radiology Findings1809.04698v2 · Yuhao Zhang, Daisy Yi Ding, Tianpei Qian et al.2018 · 126 citationsarXiv
MURA: Large Dataset for Abnormality Detection in Musculoskeletal Radiographs1712.06957v4 · Pranav Rajpurkar, Jeremy Irvin, Aarti Bagul et al.2017 · 254 citationsarXiv
CheXNet: Radiologist-Level Pneumonia Detection on Chest X-Rays with Deep Learning1711.05225v3 · Pranav Rajpurkar, Jeremy Irvin, Kaylie Zhu et al.2017 · 2,279 citationsarXivon Valency
Career total: 38 works. 28 are in this corpus.
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