IC
István Csabai
astro-phastro-ph.COastro-ph.IMDeep Learningcs.DBcs.SIphysics.soc-phastro-ph.GAbioinformaticscancer biology
On Valency
published · living versionsW_t3zb8av2·v1 · currentpublished
Photometric redshifts for the SDSS Data Release 12
with Róbert Beck, László Dobos, Tamás Budavári, Alexander S. Szalay
1 version
Preprints & journals
222 papers in the corpus · 1991–2026One-carbon metabolism controls colorectal cancer cell state and chemosensitivity through chromatin remodeling10.64898/2026.09.30.755690v1 · Vizkeleti, L., Kiss, C., Tisza, V. et al.2026 · 0 citationsbioRxiv
Probing dark energy evolution with Quaia quasars through the integrated Sachs-Wolfe effect2607.22461v1 · M. Ghodsi Yengejeh, J. R. Bermejo-Climent, A. Kov'acs et al.2026 · 0 citationsarXiv
Author Correction: Geographics and bacterial networks differently shape the acquired and latent global sewage resistomes.42386758 · Martiny, Hannah-Marie, Munk, Patrick, Fuschi, Alessandro et al.2026 · 0 citationsNature communications. 2026;17(1)
Metagenomic peek into a corn mummy.42336979 · Solymosi, Norbert, Pap, Bernadett, Nagy, Sára Ágnes et al.2026 · 0 citationsScientific reports. 2026;16(1)
Million-scale multimodal pollen microscopy with expert-guided foundation models2606.17809v2 · Andr'as Biricz, Bjorn Gedda, Don'at Magyar et al.2026 · 1 citationarXiv
STEPSIC: Initial condition generator for stereographic cosmological simulations2605.10354v1 · Bal'azs P'al, G'abor R'acz, Istv'an Csabai et al.2026 · 0 citationsarXiv
Cylindrical cosmological simulations with StePS2602.20787v2 · G'abor R'acz, Viola H. Varga, Bal'azs P'al et al.2026 · 0 citationsA&A 710, A101 (2026)
A multimodal AI biomarker PATH-ORACLE improves prediction of recurrence in stage I lung adenocarcinoma.41646758 · Kilim, Oz, Pipek, Orsolya, Sztupinszki, Zsofia et al.2026 · 0 citationsmedRxiv : the preprint server for health sciences. 2026
Zero-shot biological reasoning with open-weights large language models reproduces CRISPR screen based prediction of synthetic lethal interactions.10.64898/2026.01.28.702211v2 · Prosz, A. G., Sztupinszki, Z., Diossy, M. et al.2026 · 0 citationsbioRxiv
Integrated Sachs-Wolfe maps from the Gower Street CDM simulations2512.24369v1 · Mina Ghodsi Yengejeh, Andr'as Kov'acs, Istv'an Szapudi et al.2025 · 0 citationsA&A 709, A101 (2026)
Efficient and scalable training set generation for automated pollen monitoring with Hirst-type samplers.41408094 · Biricz, András, Magyar, Donát, Gedda, Björn et al.2026 · 2 citationsScientific reports. 2025;16(1):2002
Fourier transform mid-infrared imaging and rapid evaporative ionization mass spectrometry imaging in FFPE colorectal adenocarcinoma samples.41335335 · Borkovits, B, Török, Cs, Kontsek, E et al.2026 · 0 citationsPathologie (Heidelberg, Germany). 2026;47(Suppl 1):44-50
A case study using sewage metagenomic data for assessment of text-to-SQL capabilities in large language models.41274992 · Becsei, Ágnes, Stéger, József, Visontai, Dávid et al.2025 · 0 citationsScientific reports. 2025;15(1):44557
Geographics and bacterial networks differently shape the acquired and latent global sewage resistomes.41271719 · Martiny, Hannah-Marie, Munk, Patrick, Fuschi, Alessandro et al.2025 · 16 citationsNature communications. 2025;16(1):10278
Artificial intelligence and One Health: potential for spillover prediction?40972634 · Koopmans, Marion, Csabai, Istvan, Remondini, Daniel et al.2026 · 4 citationsThe Lancet. Infectious diseases. 2026;26(3):219-220
Examination of Genetic and Epigenetic Characteristics of Patients with Hyperhomocysteinemia Following High-Dose Folic Acid Consumption.40647238 · Bartak, Barbara K, Nagy, Zsofia B, Szakallas, Nikolett et al.2025 · 4 citationsNutrients. 2025;17(13)
Streamlining tuberculosis detection with foundation model-based weakly supervised transformer.40561575 · Bedőházi, Zsolt, Biricz, András, Foster, Nick et al.2025 · 4 citationsComputers in biology and medicine. 2025;195:110554
Polymerase theta expression is correlated with proliferative capacity but not with DNA repair deficiency status in solid tumors.40542116 · Sztupinszki, Zsofia, Fiam, Regina, Pipek, Orsolya et al.2025 · 2 citationsNPJ precision oncology. 2025;9(1):200
Neural Network-Aided Milk Somatic Cell Count Increase Prediction.40431513 · Nagy, Sára Ágnes, Csabai, István, Varga, Tamás et al.2025 · 6 citationsVeterinary sciences. 2025;12(5)
The CosmoVerse White Paper: Addressing observational tensions in cosmology with systematics and fundamental physics2504.01669v3 · Eleonora Di Valentino, Jackson Levi Said, Adam Riess et al.2025 · 324 citationsPhys. Dark Univ. 49 (2025) 101965
Constraints on AvERA Cosmologies from Cosmic Chronometers and Type Ia Supernovae2503.21369v3 · Adrienn Pataki, P'eter Raffai, Istv'an Csabai et al.2025 · 0 citationsA&A 704, A310 (2025)
Clinical considerations on antimicrobial resistance potential of complex microbiological samples.39897495 · Solymosi, Norbert, Tóth, Adrienn Gréta, Nagy, Sára Ágnes et al.2025 · 2 citationsPeerJ. 2025;13:e18802
ViralPrimer: a web server to monitor viral nucleic acid amplification tests' primer efficiency during pandemics, with emphasis on SARS-CoV-2 and Mpox.39499138 · Deutsch, Norbert, Dosztányi, Zsuzsanna, Csabai, István et al.2024 · 2 citationsBioinformatics (Oxford, England). 2024;40(11)
Author Correction: Time-series sewage metagenomics distinguishes seasonal, human-derived and environmental microbial communities potentially allowing source-attributed surveillance.39419961 · Becsei, Ágnes, Fuschi, Alessandro, Otani, Saria et al.2026 · 3 citationsNature communications. 2024;15(1):8953
Time-series sewage metagenomics distinguishes seasonal, human-derived and environmental microbial communities potentially allowing source-attributed surveillance.39215001 · Becsei, Ágnes, Fuschi, Alessandro, Otani, Saria et al.2024 · 57 citationsNature communications. 2024;15(1):7551
Transfer learning may explain pigeons' ability to detect cancer in histopathology.39059442 · Kilim, Oz, Báskay, János, Biricz, András et al.2024 · 1 citationBioinspiration & biomimetics. 2024;19(5)
Histopathology and proteomics are synergistic for High-Grade Serous Ovarian Cancer platinum response prediction.38883738 · Kilim, Oz, Olar, Alex, Biricz, András et al.2025 · 13 citationsmedRxiv : the preprint server for health sciences. 2024
Time-series sewage metagenomics can separate the seasonal, human-derived and environmental microbial communities, holding promise for source-attributed surveillance10.1101/2024.05.30.596588v1 · Becsei, A., Fuschi, A., Otani, S. et al.2024 · 1 citationbioRxiv
Author Correction: Mutational signature-based identification of DNA repair deficient gastroesophageal adenocarcinomas for therapeutic targeting.38710943 · Prosz, Aurel, Sahgal, Pranshu, Huffman, Brandon M et al.2025 · 1 citationNPJ precision oncology. 2024;8(1):98
Mutational signature-based identification of DNA repair deficient gastroesophageal adenocarcinomas for therapeutic targeting.38589664 · Prosz, Aurel, Sahgal, Pranshu, Huffman, Brandon M et al.2025 · 8 citationsNPJ precision oncology. 2024;8(1):87
Increased frequency of CHD1 deletions in prostate cancers of African American men is associated with rapid disease progression without inducing homologous recombination deficiency.38645014 · Szallasi, Zoltan, Diossy, Miklos, Tisza, Viktoria et al.2024 · 6 citationsResearch square. 2024
Classification of colorectal primer carcinoma from normal colon with mid-infrared spectra2405.10950v1 · B. Borkovits, E. Kontsek, A. Pesti et al.2024 · 2 citationsarXiv
Mobilisation and analyses of publicly available SARS-CoV-2 data for pandemic responses.38358325 · Rahman, Nadim, O'Cathail, Colman, Zyoud, Ahmad et al.2024 · 11 citationsMicrobial genomics. 2024;10(2)
Annotated dataset for training deep learning models to detect astrocytes in human brain tissue.38242926 · Olar, Alex, Tyler, Teadora, Hoppa, Paulina et al.2024 · 6 citationsScientific data. 2024;11(1):96
Systematic detection of co-infection and intra-host recombination in more than 2 million global SARS-CoV-2 samples.38225254 · Pipek, Orsolya Anna, Medgyes-Horváth, Anna, Stéger, József et al.2024 · 35 citationsNature communications. 2024;15(1):517
Biologically informed deep learning for explainable epigenetic clocks.38225268 · Prosz, Aurel, Pipek, Orsolya, Börcsök, Judit et al.2024 · 42 citationsScientific reports. 2024;14(1):1306
The CMB lensing imprint of cosmic voids detected in the WISE-Pan-STARRS luminous red galaxy catalog2312.08483v1 · G. Camacho-Ciurana, P. Lee, N. Arsenov et al.2023 · 10 citationsA&A 689, A171 (2024)
Bacterial colony size growth estimation by deep learning.37880630 · Nagy, Sára Ágnes, Makrai, László, Csabai, István et al.2023 · 15 citationsBMC microbiology. 2023;23(1):307
Author Correction: A biallelic multiple nucleotide length polymorphism explains functional causality at 5p15.33 prostate cancer risk locus.37857693 · Spisak, Sandor, Tisza, Viktoria, Nuzzo, Pier Vitale et al.2025 · 2 citationsNature communications. 2023;14(1):6623
A biallelic multiple nucleotide length polymorphism explains functional causality at 5p15.33 prostate cancer risk locus.37612286 · Spisak, Sandor, Tisza, Viktoria, Nuzzo, Pier Vitale et al.2023 · 14 citationsNature communications. 2023;14(1):5118
Annotated dataset for deep-learning-based bacterial colony detection.37507412 · Makrai, László, Fodróczy, Bettina, Nagy, Sára Ágnes et al.2023 · 34 citationsScientific data. 2023;10(1):497
Liquid biopsy-based monitoring of residual disease in multiple myeloma by analysis of the rearranged immunoglobulin genes-A feasibility study.37235573 · Marx, Anita, Osváth, Magdolna, Szikora, Bence et al.2023 · 7 citationsPloS one. 2023;18(5):e0285696
Genomic Landscape of Normal and Breast Cancer Tissues in a Hungarian Pilot Cohort.37239898 · Pipek, Orsolya, Alpár, Donát, Rusz, Orsolya et al.2023 · 5 citationsInternational journal of molecular sciences. 2023;24(10)
SARS-CoV-2 receptor-binding domain deep mutational AlphaFold2 structures.36918581 · Kilim, Oz, Mentes, Anikó, Pál, Balázs et al.2023 · 13 citationsScientific data. 2023;10(1):134
Automated prediction of COVID-19 severity upon admission by chest X-ray images and clinical metadata aiming at accuracy and explainability.36918593 · Olar, Alex, Biricz, András, Bedőházi, Zsolt et al.2023 · 5 citationsScientific reports. 2023;13(1):4226
Nucleotide excision repair deficiency is a targetable therapeutic vulnerability in clear cell renal cell carcinoma.36798363 · Prosz, Aurel, Duan, Haohui, Tisza, Viktoria et al.2023 · 10 citationsbioRxiv : the preprint server for biology. 2023
Epigenetic Regulation Explains The Functionality Behind Colon Cancer Specific Biomarker Septin910.1101/2023.01.31.526413v1 · Vizkeleti, L., Kiss, C., Tisza, V. et al.2023 · 0 citationsbioRxiv
Patterns of Somatic Variants in Colorectal Adenoma and Carcinoma Tissue and Matched Plasma Samples from the Hungarian Oncogenome Program.36765865 · Kalmár, Alexandra, Galamb, Orsolya, Szabó, Gitta et al.2023 · 10 citationsCancers. 2023;15(3)
Impact Evaluation of Score Classes and Annotation Regions in Deep Learning-Based Dairy Cow Body Condition Prediction.36670733 · Nagy, Sára Ágnes, Kilim, Oz, Csabai, István et al.2023 · 15 citationsAnimals : an open access journal from MDPI. 2023;13(2)
Porcine cytomegalovirus detection by nanopore-based metagenomic sequencing in a Hungarian pig farm10.1101/2022.12.28.522123v1 · Toth, A. G., Fiam, R., Becsei, A. et al.2022 · 3 citationsbioRxiv
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