CL
Chun-Liang Li
cs.LGcs.CVcs.AIstat.MLcs.CLLeukemia, Myeloid, AcuteCTCFGene Expression Regulation, Leukemicgenome editingLeukemia
On Valency
published · living versionsW_cf2dagf8·v1 · currentpublished
Object-Oriented Harness: Evolving Agent Harnesses through Object-Oriented Design
with Gaotang Li, Bhavana Dalvi Mishra, Yifei Ming, Yanfei Chen +7
1 version
W_eyupgefd·v2published
Preprints & journals
150 papers in the corpus · 2004–2026WhatIf-Bench: Benchmarking Intervention-Aware Time Series Forecasting2610.26582v2 · Arjun Ashok, Mihir Parmar, Palash Goyal et al.2026 · 0 citationsarXivon Valency
SEER: Self-Evolving Event Reasoning and Retrieval for Time Series Forecasting2610.04109v1 · Mingtian Tan, Palash Goyal, Mihir Parmar et al.2026 · 0 citationsarXiv
MBNL1 hijacks a structured single-stranded distal DNA element to sustain FLT3 expression in KMT2A-rearranged leukemias.42566532 · Che, Meixia, Fields, Shaela, Yi, Siqi et al.2026 · 0 citationsScience advances. 2026;12(32):eaec2331
Chemokine-Dependent Natural Killer Cells Prevent Pulmonary Metastasis in a Newly Established Mouse Osteosarcoma Model10.64898/2026.07.19.738728v1 · Yang, J., Zindy, F., Fields, S. et al.2026 · 0 citationsbioRxiv
Rbm5 sustains leukemia stem cells through a Myc-driven transcriptional circuitry.42463942 · Zhang, Mengli, Fields, Shaela, Zhang, Qiong et al.2026 · 0 citationsLeukemia. 2026;40(10):2167-2180
The H3K4 methyltransferase KMT2D is an essential cofactor for GATA1 at erythroid gene enhancers.42409830 · Zhang, Jianxiang, Xin, Ye, Cheng, Li et al.2026 · 0 citationsNature communications. 2026;17(1)
A Conserved Enhancer Locus in Extrachromosomal DNA and Homogeneously Staining Regions Activates MYC Transcription in Group 3 Medulloblastoma.42018144 · Friske, Jake D, Cuisin, Flore, Guernalec, Paloma et al.2026 · 0 citationsCancer research. 2026;86(13):3160-3178
Deciphering resistance mechanisms to auxin-inducible protein degradation in mammalian cells.42248454 · Hyle, Judith, Liu, Zhenling, Fields, Shaela et al.2026 · 0 citationsThe Journal of biological chemistry. 2026;302(7):113232
ScientistOne: Towards Human-Level Autonomous Research via Chain-of-Evidence2605.26340v1 · Rui Meng, Bhavana Dalvi Mishra, Jiefeng Chen et al.2026 · 0 citationsarXiv
Inductive Deductive Synthesis: Enabling AI to Generate Formally Verified Systems2605.23109v1 · Shubham Agarwal, Alexander Krentsel, Shu Liu et al.2026 · 0 citationsarXiv
ARID1A Mediates SWI/SNF-Independent Maintenance of Heterochromatin Architecture to Restrain Viral Mimicry and Immunogenicity in Colon Cancer.41661654 · Li, Qian, Zhang, Zhe, Wang, Yihao et al.2026 · 4 citationsCancer research. 2026;86(10):2344-2359
Nexus : An Agentic Framework for Context-Aware Time Series Forecasting2605.14389v2 · Sarkar Snigdha Sarathi Das, Palash Goyal, Mihir Parmar et al.2026 · 0 citationsarXiv
STRIDE: Reasoning-Aware Training for Time Series Forecasting2605.08625v2 · Md Atik Ahamed, Mihir Parmar, Palash Goyal et al.2026 · 0 citationsarXiv
LEAF: A Living Benchmark for Event-Augmented Forecasting2605.16358v2 · Mingtian Tan, Mihir Parmar, Palash Goyal et al.2026 · 0 citationsarXiv
Serpine1 regulates Th17 cell differentiation and exacerbates IMQ-induced skin inflammation.42118108 · Saimaier, Kaidireya, Xie, Ling, Wang, Chun et al.2026 · 0 citationsJournal of immunology (Baltimore, Md. : 1950). 2026;215(4)
VSAS-Bench: Real-Time Evaluation of Visual Streaming Assistant Models2604.07634v2 · Pavan Kumar Anasosalu Vasu, Cem Koc, Fartash Faghri et al.2026 · 0 citationsarXiv
TFRBench: A Reasoning Benchmark for Evaluating Forecasting Systems2604.05364v1 · Md Atik Ahamed, Mihir Parmar, Palash Goyal et al.2026 · 0 citationsarXiv
AMUSE: Audio-Visual Benchmark and Alignment Framework for Agentic Multi-Speaker Understanding2512.16250v1 · Sanjoy Chowdhury, Karren D. Yang, Xudong Liu et al.2025 · 0 citationsarXiv
Deciphering acquired resistance mechanisms to sustained auxin-inducible protein degradation in cells and mice.41040178 · Hyle, Judith, Liu, Zhenling, Fields, Shaela et al.2026 · 0 citationsbioRxiv : the preprint server for biology. 2025
Characterization of the Specific Binding Between Aptamers and Cytochrome c With Pressure-Assisted Capillary Electrophoresis Frontal Analysis.40890566 · Wang, Shuanghao, Li, Chunliang, Wang, Shuangshuang et al.2025 · 3 citationsElectrophoresis. 2025;46(19):1461-1470
Activation of a nongenetic AHR-ELMSAN1 axis optimizes BET-targeting therapy and suppresses leukemia stem cells in preclinical models.40768599 · Zhou, Xinyue, Moreira, Steven, Restelli, Cecilia et al.2025 · 3 citationsScience translational medicine. 2025;17(810):eadn5400
PIKfyve Inhibition Induces Antitumor Immunogenicity by Attenuating STING Trafficking and Lysosomal Degradation.40403159 · He, Jie, Huang, Rui, Zong, Chunyan et al.2025 · 3 citationsCancer immunology research. 2025;13(8):1266-1283
The Delta Learning Hypothesis: Preference Tuning on Weak Data can Yield Strong Gains2507.06187v1 · Scott Geng, Hamish Ivison, Chun-Liang Li et al.2025 · 0 citationsarXiv
Serpine1 plays a critical role in Th17 cell differentiation and psoriasis pathogenesis10.1101/2025.05.08.652800v1 · Saimaier, K., Xie, L., Wang, C. et al.2025 · 0 citationsbioRxiv
Deciphering the role of RNA in regulating CTCF's DNA binding affinity in leukemia cells.40355969 · Hyle, Judith, Qi, Wenjie, Djekidel, Mohamed Nadhir et al.2025 · 5 citationsGenome biology. 2025;26(1):126
FocalLens: Instruction Tuning Enables Zero-Shot Conditional Image Representations2504.08368v1 · Cheng-Yu Hsieh, Pavan Kumar Anasosalu Vasu, Fartash Faghri et al.2025 · 0 citationsarXiv
Coordinated Role of Autophagy and ERAD in Maintaining Neuroendocrine Function by Preventing Prohormone Aggregation.40051383 · Pan, Xuya, He, Xing, Wu, Su et al.2025 · 4 citationsAdvanced science (Weinheim, Baden-Wurttemberg, Germany). 2025;12(23):e2411662
FastVLM: Efficient Vision Encoding for Vision Language Models2412.13303v2 · Pavan Kumar Anasosalu Vasu, Fartash Faghri, Chun-Liang Li et al.2024 · 33 citationsarXiv
Case report: a rare case of intradural and pleural wall cystic echinococcosis.39285332 · Zhao, Jianchen, Xu, Lingping, Lin, Xiaozhou et al.2024 · 2 citationsBMC infectious diseases. 2024;24(1):980
MUSCLE: A Model Update Strategy for Compatible LLM Evolution2407.09435v2 · Jessica Echterhoff, Fartash Faghri, Raviteja Vemulapalli et al.2024 · 4 citationsarXiv
Graph-Based Captioning: Enhancing Visual Descriptions by Interconnecting Region Captions2407.06723v2 · Yu-Guan Hsieh, Cheng-Yu Hsieh, Shih-Ying Yeh et al.2024 · 0 citationsarXiv
Dynamic Foxp3-chromatin interaction controls tunable Treg cell function.38935023 · He, Minghong, Zong, Xinying, Xu, Beisi et al.2024 · 36 citationsThe Journal of experimental medicine. 2024;221(9)
Found in the Middle: Calibrating Positional Attention Bias Improves Long Context Utilization2406.16008v2 · Cheng-Yu Hsieh, Yung-Sung Chuang, Chun-Liang Li et al.2024 · 30 citationsarXiv
The Unmet Promise of Synthetic Training Images: Using Retrieved Real Images Performs Better2406.05184v5 · Scott Geng, Cheng-Yu Hsieh, Vivek Ramanujan et al.2024 · 7 citationsarXiv
Dataset Decomposition: Faster LLM Training with Variable Sequence Length Curriculum2405.13226v2 · Hadi Pouransari, Chun-Liang Li, Jen-Hao Rick Chang et al.2024 · 4 citationsarXiv
CodecLM: Aligning Language Models with Tailored Synthetic Data2404.05875v1 · Zifeng Wang, Chun-Liang Li, Vincent Perot et al.2024 · 8 citationsarXiv
RNA-binding protein RBM5 plays an essential role in acute myeloid leukemia by activating the oncogenic protein HOXA9.38216972 · Zhang, Mengli, Hyle, Judith, Chen, Xiaowen et al.2024 · 17 citationsGenome biology. 2024;25(1):16
Chain-of-Table: Evolving Tables in the Reasoning Chain for Table Understanding2401.04398v2 · Zilong Wang, Hao Zhang, Chun-Liang Li et al.2024 · 17 citationsarXiv
Long-Read Sequencing Reveals Alternative Splicing-Driven, Shared Immunogenic Neoepitopes Regardless of SF3B1 Status in Uveal Melanoma.37756564 · Yao, Tengteng, Zhang, Zhe, Li, Qian et al.2023 · 22 citationsCancer immunology research. 2023;11(12):1671-1687
Systematic characterization of the HOXA9 downstream targets in MLL-r leukemia by noncoding CRISPR screens.38016946 · Wright, Shaela, Zhao, Xujie, Rosikiewicz, Wojciech et al.2023 · 10 citationsNature communications. 2023;14(1):7464
ETV6 represses inflammatory response genes and regulates HSPC function during stress hematopoiesis in mice.37522715 · Bloom, Mackenzie, Oak, Ninad, Baskin-Doerfler, Rebekah et al.2023 · 19 citationsBlood advances. 2023;7(18):5608-5623
CRISPR screen identifies the role of RBBP8 in mediating unfolded protein response induced liver damage through regulating protein synthesis.37591836 · Wang, Heting, Pan, Xuya, Xiang, Xiaoxin et al.2023 · 7 citationsCell death & disease. 2023;14(8):531
Tool Documentation Enables Zero-Shot Tool-Usage with Large Language Models2308.00675v1 · Cheng-Yu Hsieh, Si-An Chen, Chun-Liang Li et al.2023 · 10 citationsarXiv
An Expanded Benchmark that Rediscovers and Affirms the Edge of Uncertainty Sampling for Active Learning in Tabular Datasets2306.08954v3 · Po-Yi Lu, Yi-Jie Cheng, Chun-Liang Li et al.2023 · 3 citationsPublished in Transactions on Machine Learning Research (TMLR), 2025
FormNetV2: Multimodal Graph Contrastive Learning for Form Document Information Extraction2305.02549v2 · Chen-Yu Lee, Chun-Liang Li, Hao Zhang et al.2023 · 10 citationsarXiv
Distilling Step-by-Step! Outperforming Larger Language Models with Less Training Data and Smaller Model Sizes2305.02301v2 · Cheng-Yu Hsieh, Chun-Liang Li, Chih-Kuan Yeh et al.2023 · 322 citationsarXiv
Interrogating bromodomain inhibitor resistance in KMT2A-rearranged leukemia through combinatorial CRISPR screens.37036970 · Wright, Shaela, Hu, Jianzhong, Wang, Hong et al.2023 · 13 citationsProceedings of the National Academy of Sciences of the United States of America. 2023;120(16):e2220134120
Malignant Progression of an Ancestral Bone Marrow Clone Harboring a CIC-NUTM2A Fusion in Isolated Myeloid Sarcoma.36637394 · Kamens, Jennifer L, Dang, Jinjun, Shaw, Timothy I et al.2023 · 4 citationsMolecular cancer research : MCR. 2023;21(4):301-306
TSMixer: An All-MLP Architecture for Time Series Forecasting2303.06053v5 · Si-An Chen, Chun-Liang Li, Nate Yoder et al.2023 · 161 citationsTransactions on Machine Learning Research (TMLR), 09/2023
Pic2Word: Mapping Pictures to Words for Zero-shot Composed Image Retrieval2302.03084v2 · Kuniaki Saito, Kihyuk Sohn, Xiang Zhang et al.2023 · 145 citationsarXiv
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