MR
Markus Rempfler
cs.CVAlgorithmsBenchmarkingcs.LGeess.IVNeural Networks, ComputerSegmentationBenchmarkbioinformaticsCaenorhabditis elegans
On Valency
published · living versionsW_j5haz7ag·v1 · currentpublished
Automatic Liver and Lesion Segmentation in CT Using Cascaded Fully Convolutional Neural Networks and 3D Conditional Random Fields
with Patrick Ferdinand Christ, Mohamed Ezzeldin A. Elshaer, Florian Ettlinger, Sunil Tatavarty +8
1 version
Preprints & journals
22 papers in the corpus · 2014–2023C. elegans molting requires rhythmic accumulation of the Grainyhead/LSF transcription factor GRH-1.36688410 · Meeuse, Milou W M, Hauser, Yannick P, Nahar, Smita et al.2023 · 23 citationsThe EMBO journal. 2023;42(4):e111895
The Liver Tumor Segmentation Benchmark (LiTS).36481607 · Bilic, Patrick, Christ, Patrick, Li, Hongwei Bran et al.2023 · 1,394 citationsMedical image analysis. 2023;84:102680
VerSe: A Vertebrae labelling and segmentation benchmark for multi-detector CT images.34340104 · Sekuboyina, Anjany, Husseini, Malek E, Bayat, Amirhossein et al.2021 · 374 citationsMedical image analysis. 2021;73:102166
deepBlink: threshold-independent detection and localization of diffraction-limited spots.34197605 · Eichenberger, Bastian Th, Zhan, YinXiu, Rempfler, Markus et al.2021 · 47 citationsNucleic acids research. 2021;49(13):7292-7297
The MICCAI Hackathon on reproducibility, diversity, and selection of papers at the MICCAI conference2103.05437v2 · Fabian Balsiger, Alain Jungo, Naren Akash R J et al.2021 · 0 citationsarXiv
RDCNet: Instance segmentation with a minimalist recurrent residual network2010.00991v1 · Raphael Ortiz, Gustavo de Medeiros, Antoine H.F.M. Peters et al.2020 · 11 citationsarXiv
Labeling Vertebrae with Two-dimensional Reformations of Multidetector CT Images: An Adversarial Approach for Incorporating Prior Knowledge of Spine Anatomy.33937818 · Sekuboyina, Anjany, Rempfler, Markus, Valentinitsch, Alexander et al.2022 · 44 citationsRadiology. Artificial intelligence. 2020;2(2):e190074
Probabilistic Point Cloud Reconstructions for Vertebral Shape Analysis1907.09254v2 · Anjany Sekuboyina, Markus Rempfler, Alexander Valentinitsch et al.2019 · 9 citationsarXiv
Self-organization and symmetry breaking in intestinal organoid development.31019299 · Serra, Denise, Mayr, Urs, Boni, Andrea et al.2019 · 561 citationsNature. 2019;569(7754):66-72
Labelling Vertebrae with 2D Reformations of Multidetector CT Images: An Adversarial Approach for Incorporating Prior Knowledge of Spine Anatomy1902.02205v4 · Anjany Sekuboyina, Markus Rempfler, Alexander Valentinitsch et al.2019 · 0 citationsarXiv
Panoptic imaging of transparent mice reveals whole-body neuronal projections and skull-meninges connections.30598527 · Cai, Ruiyao, Pan, Chenchen, Ghasemigharagoz, Alireza et al.2019 · 465 citationsNature neuroscience. 2019;22(2):317-327
Panoptic vDISCO imaging reveals neuronal connectivity, remote trauma effects and meningeal vessels in intact transparent mice10.1101/374785v1 · Cai, R., Pan, C., Ghasemigharagoz, A. et al.2018 · 18 citationsbioRxiv
Tracing cell lineages in videos of lens-free microscopy.29933115 · Rempfler, Markus, Stierle, Valentin, Ditzel, Konstantin et al.2019 · 19 citationsMedical image analysis. 2018;48:147-161
Btrfly Net: Vertebrae Labelling with Energy-based Adversarial Learning of Local Spine Prior1804.01307v2 · Anjany Sekuboyina, Markus Rempfler, Jan Kukacka et al.2018 · 70 citationsarXiv
Deep-FExt: Deep Feature Extraction for Vessel Segmentation and Centerline Prediction1704.03743v1 · Giles Tetteh, Markus Rempfler, Bjoern H. Menze et al.2017 · 17 citationsWang Q., Shi Y., Suk HI., Suzuki K. (eds) Machine Learning in Medical Imaging. MLMI 2017. Lecture Notes in Computer Science, vol 10541. Springer, Cham
Automated Unsupervised Segmentation of Liver Lesions in CT scans via Cahn-Hilliard Phase Separation1704.02348v1 · Jana Lipkov'a, Markus Rempfler, Patrick Christ et al.2017 · 8 citationsarXiv
Automatic Liver and Tumor Segmentation of CT and MRI Volumes using Cascaded Fully Convolutional Neural Networks1702.05970v2 · Patrick Ferdinand Christ, Florian Ettlinger, Felix Grun et al.2017 · 278 citationsarXiv
Efficient Algorithms for Moral Lineage Tracing1702.04111v2 · Markus Rempfler, Jan-Hendrik Lange, Florian Jug et al.2017 · 12 citationsarXiv
Automatic Liver and Lesion Segmentation in CT Using Cascaded Fully Convolutional Neural Networks and 3D Conditional Random Fields1610.02177v1 · Patrick Ferdinand Christ, Mohamed Ezzeldin A. Elshaer, Florian Ettlinger et al.2016 · 623 citationsarXivon Valency
The Minimum Cost Connected Subgraph Problem in Medical Image Analysis1606.06135v1 · Markus Rempfler, Bjoern Andres, Bjoern H. Menze2016 · 10 citationsarXiv
Reconstructing cerebrovascular networks under local physiological constraints by integer programming.25977158 · Rempfler, Markus, Schneider, Matthias, Ielacqua, Giovanna D et al.2016 · 27 citationsMedical image analysis. 2015;25(1):86-94
Extracting vascular networks under physiological constraints via integer programming.25485417 · Rempfler, Markus, Schneider, Matthias, Ielacqua, Giovanna D et al.2015 · 9 citationsMedical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. 2014;17(Pt 2):505-12
Career total: 37 works. 22 are in this corpus.
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