CM
Carmen Molina-Paris
gr-qchep-thModels, Biologicalhep-phastro-phmathematical modelModels, Immunologicalcond-mat.stat-mechGenome, Viralimmunology
On Valency
published · living versionsW_gq5pxzse·v1 · currentpublished
Effective action for stochastic partial differential equations
with David Hochberg, Juan Perez-Mercader, Matt Visser
1 version
Preprints & journals
104 papers in the corpus · 1996–2026Anisotropic Gold Nanoconjugates Bearing Immunoinformatically Designed T-Cell Epitope-Containing Peptides: Comparative Evaluation in THP-1 and Human Primary Macrophages.42794827 · Contreras-Trigo, Braulio, Guzmán-Gutiérrez, Enrique, Zúñiga, Eduardo et al.2026 · 0 citationsInternational journal of molecular sciences. 2026;27(18)
Mechanistic mathematical model of the in vitro infection dynamics of Bunyamwera and Batai viruses including MOI-dependent shortening of the eclipse phase.42368258 · Whaler, Bevelynn, Todd, Eleanor, Shaw, Amelia B et al.2026 · 0 citationsArXiv. 2026
Multiple Reassortments, Limited Geographic Spread, and Comparable Pathogenicity of Crimean-Congo Hemorrhagic Fever Viruses in Sivas Province, Türkiye.42324912 · Lin, Qianying, Elaldi, Nazif, Yigit, Mesut et al.2026 · 1 citationJournal of medical virology. 2026;98(6):e71027
Genomic characterisation of Crimean-Congo haemorrhagic fever virus (CCHFV) in Tajikistan identifies a novel reassortant virus.41945610 · D'Addiego, Jake, Tishkova, Farida, Mullojonova, Manija et al.2026 · 1 citationPLoS neglected tropical diseases. 2026;20(4):e0014204
Mechanistic within-host mathematical model of inhalational anthrax.40991654 · Whaler, Bevelynn, Lythe, Grant, Gillard, Joseph J et al.2025 · 1 citationPLoS computational biology. 2025;21(9):e1013439
wavess: An R package for simulation of adaptive within-host virus sequence evolution.40966297 · Sambaturu, Narmada, Lapp, Zena, Tria, Fernando D K et al.2025 · 1 citationPLoS computational biology. 2025;21(9):e1013437
A mathematical framework for human neutrophil state transitions inferred from single-cell RNA sequence data.40631139 · Wigerblad, Gustaf, Carruthers, Jonathan, Ray, Sumanta et al.2025 · 1 citationbioRxiv : the preprint server for biology. 2025
A consensus mathematical model of vaccine-induced antibody dynamics for multiple vaccine platforms and pathogens.40642065 · Wilding, Kristen M, Molina-París, Carmen, Kubicek-Sutherland, Jessica Z et al.2025 · 4 citationsFrontiers in immunology. 2025;16:1596518
SIV proviruses seeded later in infection are harbored in short-lived CD4+ T cells.40327506 · Sambaturu, Narmada, Fray, Emily J, Hariharan, Vivek et al.2025 · 3 citationsCell reports. 2025;44(5):115663
Longitudinal seroprevalence of Crimean-Congo hemorrhagic fever virus in Southern Uganda.39945753 · Mihalakakos, Evan A, Ssempijja, Victor, Ribeiro, Ruy M et al.2025 · 5 citationsEmerging microbes & infections. 2025;14(1):2465315
Quantification of heterogeneity in human CD8+ T cell responses to vaccine antigens: an HLA-guided perspective.39624092 · Harris, Duane C, Shanker, Apoorv, Montoya, Makaela M et al.2024 · 1 citationFrontiers in immunology. 2024;15:1420284
Stochastic journeys of cell progenies through compartments and the role of self-renewal, symmetric and asymmetric division.39009631 · Dreiwi, Hanan, Feliciangeli, Flavia, Castro, Mario et al.2024 · 0 citationsScientific reports. 2024;14(1):16287
A story of viral co-infection, co-transmission and co-feeding in ticks: how to compute an invasion reproduction number.38562445 · Belluccini, Giulia, Lin, Qianying, Williams, Bevelynn et al.2024 · 0 citationsArXiv. 2024
Exploring the therapeutic potential of defective interfering particles in reducing the replication of SARS-CoV-210.1101/2024.03.11.584367v1 · Locke, M., Grebennikov, D., Sazonov, I. et al.2024 · 1 citationbioRxiv
The reproduction number and its probability distribution for stochastic viral dynamics.38264928 · Williams, Bevelynn, Carruthers, Jonathan, Gillard, Joseph J et al.2024 · 12 citationsJournal of the Royal Society, Interface. 2024;21(210):20230400
Multi-variate model of T cell clonotype competition and homeostasis.38081863 · Luque Duque, Daniel, Gaevert, Jessica A, Thomas, Paul G et al.2023 · 0 citationsScientific reports. 2023;13(1):21995
Last in first out: SIV proviruses seeded later in infection are harbored in short-lived CD4+ T cells.37961482 · Sambaturu, Narmada, Fray, Emily J, Wu, Fengting et al.2025 · 0 citationsbioRxiv : the preprint server for biology. 2023
Modeling the evolution of segment trees reveals deficiencies in current inferential methods for genomic reassortment.37790507 · Lin, Qianying, Goldberg, Emma E, Leitner, Thomas et al.2024 · 4 citationsbioRxiv : the preprint server for biology. 2023
Antiretroviral therapy reveals triphasic decay of intact SIV genomes and persistence of ancestral variants.36809762 · Fray, Emily J, Wu, Fengting, Simonetti, Francesco R et al.2023 · 28 citationsCell host & microbe. 2023;31(3):356-372.e5
Why are cell populations maintained via multiple compartments?36349449 · Feliciangeli, Flavia, Dreiwi, Hanan, López-García, Martín et al.2022 · 3 citationsJournal of the Royal Society, Interface. 2022;19(196):20220629
Tuning of cytokine signaling through imbalanced abundances of receptors and kinases10.1101/2022.10.07.511173v1 · Sta, L., Voisinne, G., Cotari, J. et al.2022 · 1 citationbioRxiv
Counting generations in birth and death processes with competing Erlang and exponential waiting times.35789162 · Belluccini, Giulia, López-García, Martín, Lythe, Grant et al.2022 · 11 citationsScientific reports. 2022;12(1):11289
Algebraic study of receptor-ligand systems: a dose-response analysis2206.13364v1 · L'ea Sta, Michael Adamer, Carmen Molina-Par'is2022 · 4 citationsarXiv
Receptor tyrosine kinases regulate signal transduction through a liquid-liquid phase separated state.35231400 · Lin, Chi-Chuan, Suen, Kin Man, Jeffrey, Polly-Anne et al.2022 · 99 citationsMolecular cell. 2022;82(6):1089-1106.e12
Monitoring VEGF-Stimulated Calcium Ion Flux in Endothelial Cells.35451752 · Critchley, William R, Fearnley, Gareth W F, Abdul-Zani, Izma et al.2022 · 3 citationsMethods in molecular biology (Clifton, N.J.). 2022;2475:113-124
A multi-stage model of cell proliferation and death: tracking cell divisions with Erlang distributions2112.00371v1 · Giulia Belluccini, Mart'in L'opez-Garc'ia, Grant Lythe et al.2021 · 2 citationsarXiv
A stochastic model of cell proliferation and death across a sequence of compartments2111.11753v1 · Hanan Dreiwi, Flavia Feliciangeli, Mario Castro et al.2021 · 0 citationsarXiv
Quantifying T Cell Cross-Reactivity: Influenza and Coronaviruses.34578367 · Gaevert, Jessica Ann, Luque Duque, Daniel, Lythe, Grant et al.2022 · 15 citationsViruses. 2021;13(9)
A Stochastic Intracellular Model of Anthrax Infection With Spore Germination Heterogeneity.34497601 · Williams, Bevelynn, López-García, Martín, Gillard, Joseph J et al.2021 · 8 citationsFrontiers in immunology. 2021;12:688257
Competitive binding of STATs to receptor phospho-Tyr motifs accounts for altered cytokine responses.33871355 · Wilmes, Stephan, Jeffrey, Polly-Anne, Martinez-Fabregas, Jonathan et al.2021 · 35 citationseLife. 2021;10
Fusion and fission events regulate endosome maturation and viral escape.33846408 · Castro, Mario, Lythe, Grant, Smit, Jolanda et al.2021 · 12 citationsScientific reports. 2021;11(1):7845
Quantification of Ebola virus replication kinetics in vitro2010.09898v1 · Laura E. Liao, Jonathan Carruthers, Sophie J. Smither et al.2020 · 18 citationsPLOS Comput. Biol., 16(11):e1008375, November, 2020
The Cytokine Receptor IL-7Rα Impairs IL-2 Receptor Signaling and Constrains the In Vitro Differentiation of Foxp3+ Treg Cells.32791329 · Waickman, Adam T, Keller, Hilary R, Kim, Tae-Hyoun et al.2021 · 28 citationsiScience. 2020;23(8):101421
Stochastic dynamics of Francisella tularensis infection and replication.32479491 · Carruthers, Jonathan, Lythe, Grant, López-García, Martín et al.2020 · 6 citationsPLoS computational biology. 2020;16(6):e1007752
An Investigation of the Effect of Transfected Defective, Ebola Virus Genomes on Ebola Replication.32373552 · Smither, Sophie J, Garcia-Dorival, Isabel, Eastaugh, Lin et al.2021 · 7 citationsFrontiers in cellular and infection microbiology. 2020;10:159
IL7 receptor signaling in T cells: A mathematical modeling perspective.31137085 · Park, Jung-Hyun, Waickman, Adam T, Reynolds, Joseph et al.2020 · 11 citationsWiley interdisciplinary reviews. Systems biology and medicine. 2019;11(5):e1447
Fate of a Naive T Cell: A Stochastic Journey.30894850 · de la Higuera, Luis, López-García, Martín, Castro, Mario et al.2020 · 12 citationsFrontiers in immunology. 2019;10:194
First passage events in biological systems with non-exponential inter-event times.30305644 · Castro, Mario, López-García, Martín, Lythe, Grant et al.2019 · 22 citationsScientific reports. 2018;8(1):15054
Quantifying the phosphorylation timescales of receptor-ligand complexes: a Markovian matrix-analytic approach.30232099 · López-García, M, Nowicka, M, Bendtsen, C et al.2019 · 8 citationsOpen biology. 2018;8(9)
Some deterministic and stochastic mathematical models of naïve T-cell homeostasis.30129198 · Lythe, Grant, Molina-París, Carmen2019 · 24 citationsImmunological reviews. 2018;285(1):206-217
A Novel Stochastic Multi-Scale Model of Francisella tularensis Infection to Predict Risk of Infection in a Laboratory.30034369 · Carruthers, Jonathan, López-García, Martín, Gillard, Joseph J et al.2025 · 12 citationsFrontiers in microbiology. 2018;9:1165
A window of opportunity for cooperativity in the T Cell Receptor.29976994 · Martin-Blanco, N, Blanco, R, Alda-Catalinas, C et al.2018 · 26 citationsNature communications. 2018;9(1):2618
Role of genetic heterogeneity in determining the epidemiological severity of H1N1 influenza.29561846 · Sambaturu, Narmada, Mukherjee, Sumanta, López-García, Martín et al.2018 · 20 citationsPLoS computational biology. 2018;14(3):e1006069
A mathematical study of CD8+ T cell responses calibrated with human data1802.05094v1 · John Paul Gosling, Sheeja M. Krishnan, Grant Lythe et al.2018 · 5 citationsarXiv
Identification of a gene signature for discriminating metastatic from primary melanoma using a molecular interaction network approach.29229936 · Metri, Rahul, Mohan, Abhilash, Nsengimana, Jérémie et al.2019 · 39 citationsScientific reports. 2017;7(1):17314
A unifying mathematical framework for experimental TCR-pMHC kinetic constants.28443634 · Faro, Jose, Castro, Mario, Molina-París, Carmen2019 · 24 citationsScientific reports. 2017;7:46741
A new mechanism shapes the naïve CD8+ T cell repertoire: the selection for full diversity.28212502 · Gonçalves, Pedro, Ferrarini, Marco, Molina-Paris, Carmen et al.2017 · 18 citationsMolecular immunology. 2017;85:66-80
Continuous Effector CD8(+) T Cell Production in a Controlled Persistent Infection Is Sustained by a Proliferative Intermediate Population.27421704 · Chu, H Hamlet, Chan, Shiao-Wei, Gosling, John Paul et al.2017 · 85 citationsImmunity. 2016;45(1):159-71
Stochastic descriptors to study the fate and potential of naive T cell clonotypes in the periphery.27350044 · Artalejo, J R, Gómez-Corral, A, López-García, M et al.2017 · 10 citationsJournal of mathematical biology. 2017;74(3):673-708
Stochastic models of the binding kinetics of VEGF-A to VEGFR1 and VEGFR2 in endothelial cells1606.07269v1 · Martin Lopez-Garcia, Maria Nowicka, Claus Bendtsen et al.2016 · 0 citationsarXiv
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