YL
Yingfeng Luo
cs.CLGenome, PlantMicrobiotaRiceEvolution, MolecularGenome, BacterialRNA-SeqSoftwareTranscriptome454 Sequencing
On Valency
published · living versionsW_af3g4cpf·v1 · currentpublished
PEAR: Adaptive Advantage Reshaping for Perception and Exploration in Large Vision-Language Models
with Junxin Wang, Xiangchen Song, Weiqiao Shan, Runsong Zhao +10
1 version
Preprints & journals
49 papers in the corpus · 2006–2026The complete chloroplast genome sequence and phylogenetic analysis of Zinnia elegans Jacq. 1792 (Asteraceae).42807862 · Ling, Chengcheng, Cheng, Huilin, Luo, Yingfeng et al.2026 · 0 citationsMitochondrial DNA. Part B, Resources. 2026;11(10):1167-1171
The Cucurbita ficifolia Mitochondrial Genome: Repeat-Rich Architecture, Plastid Homology, and Synteny Turnover Across Cucurbitaceae.42792997 · Yang, Jun, Li, Xinhui, Cheng, Huilin et al.2026 · 0 citationsGenes. 2026;17(9)
Genomic and functional characterization of sugar transporters reveals potential roles in sugar accumulation in a modern sugarcane cultivar.42722110 · Li, Baiyang, Mo, Tingming, Zheng, Xinyue et al.2026 · 0 citationsPlant science : an international journal of experimental plant biology. 2026;373:113444
Functional RNA splitting drove the evolutionary emergence of type V CRISPR-Cas systems from transposons.41850286 · Jin, Shuai, Zhu, Zixu, Li, Yunjia et al.2026 · 1 citationCell. 2026;189(7):2189-2193
Functional RNA splitting drove the evolutionary emergence of type V CRISPR-Cas systems from transposons.41027434 · Jin, Shuai, Zhu, Zixu, Li, Yunjia et al.2025 · 15 citationsCell. 2025;188(22):6283-6300.e22
One Size Does Not Fit All: Distribution-Guided Tensor-Wise Adaptive Sparsification for Model Merging2508.06163v2 · Yingfeng Luo, Dingyang Lin, Junxin Wang et al.2025 · 0 citationsarXiv
Step-level Verifier-guided Hybrid Test-Time Scaling for Large Language Models2507.15512v3 · Kaiyan Chang, Yonghao Shi, Chenglong Wang et al.2025 · 0 citationsarXiv
DaapNLRSeek, prediction, and evolution of resistance genes in polyploid sugarcane genomes.40620904 · Huang, Yiting, Luo, Yingfeng, Lin, Xiao2026 · 1 citationiScience. 2025;28(7):112869
VarEPS-MPXV: A risk evaluation system for observed and virtual variations in mpox virus genomes.42903882 · Sun, Qinglan, Shu, Chang, Liu, Yuanbin et al.2026 · 2 citationshLife. 2025;3(7):327-337
Beyond Decoder-only: Large Language Models Can be Good Encoders for Machine Translation2503.06594v2 · Yingfeng Luo, Tong Zheng, Yongyu Mu et al.2025 · 5 citationsarXiv
Enhancing Speech Large Language Models with Prompt-Aware Mixture of Audio Encoders2502.15178v3 · Weiqiao Shan, Yuang Li, Yuhao Zhang et al.2025 · 3 citationsarXiv
Boosting Text-To-Image Generation via Multilingual Prompting in Large Multimodal Models2501.07086v1 · Yongyu Mu, Hengyu Li, Junxin Wang et al.2025 · 3 citationsarXiv
Global Marine Cold Seep Metagenomes Reveal Diversity of Taxonomy, Metabolic Function, and Natural Products.39160620 · Yu, Tao, Luo, Yingfeng, Tan, Xinyu et al.2024 · 13 citationsGenomics, proteomics & bioinformatics. 2024;22(2)
Efficient Prompting Methods for Large Language Models: A Survey2404.01077v2 · Kaiyan Chang, Songcheng Xu, Chenglong Wang et al.2024 · 18 citationsarXiv
VarEPS-Influ:an risk evaluation system of occurred and virtual variations of influenza virus genomes.37889020 · Shu, Chang, Sun, Qinglan, Fan, Guomei et al.2024 · 11 citationsNucleic acids research. 2024;52(D1):D798-D807
Prompting Neural Machine Translation with Translation Memories2301.05380v2 · Abudurexiti Reheman, Tao Zhou, Yingfeng Luo et al.2023 · 20 citationsarXiv
Improved pea reference genome and pan-genome highlight genomic features and evolutionary characteristics.36138232 · Yang, Tao, Liu, Rong, Luo, Yingfeng et al.2022 · 188 citationsNature genetics. 2022;54(10):1553-1563
A genome and gene catalog of glacier microbiomes.35760913 · Liu, Yongqin, Ji, Mukan, Yu, Tao et al.2022 · 146 citationsNature biotechnology. 2022;40(9):1341-1348
Composition and Ecological Roles of the Core Microbiome along the Abyssal-Hadal Transition Zone Sediments of the Mariana Trench.35768947 · Jing, Hongmei, Xiao, Xiang, Zhang, Yue et al.2022 · 37 citationsMicrobiology spectrum. 2022;10(3):e0198821
Amplicon-based sequencing and co-occurence network analysis reveals notable differences of microbial community structure in healthy and dandruff scalps.35439925 · Wang, Li, Yu, Tao, Zhu, Yaxin et al.2022 · 18 citationsBMC genomics. 2022;23(1):312
VarEPS: an evaluation and prewarning system of known and virtual variations of SARS-CoV-2 genomes.34634813 · Sun, Qinglan, Shu, Chang, Shi, Wenyu et al.2022 · 28 citationsNucleic acids research. 2022;50(D1):D888-D897
The NiuTrans Machine Translation Systems for WMT212109.10485v1 · Shuhan Zhou, Tao Zhou, Binghao Wei et al.2021 · 1 citationarXiv
Genome-wide specificity of prime editors in plants.33859403 · Jin, Shuai, Lin, Qiupeng, Luo, Yingfeng et al.2021 · 128 citationsNature biotechnology. 2021;39(10):1292-1299
A Simple and Effective Approach to Robust Unsupervised Bilingual Dictionary Induction2011.14874v1 · Yanyang Li, Yingfeng Luo, Ye Lin et al.2020 · 8 citationsarXiv
Rationally Designed APOBEC3B Cytosine Base Editors with Improved Specificity.32721385 · Jin, Shuai, Fei, Hongyuan, Zhu, Zixu et al.2020 · 159 citationsMolecular cell. 2020;79(5):728-740.e6
IC4R-2.0: Rice Genome Reannotation Using Massive RNA-seq Data.32683045 · Sang, Jian, Zou, Dong, Wang, Zhennan et al.2021 · 38 citationsGenomics, proteomics & bioinformatics. 2020;18(2):161-172
The genome evolution and domestication of tropical fruit mango.32143734 · Wang, Peng, Luo, Yingfeng, Huang, Jianfeng et al.2021 · 250 citationsGenome biology. 2020;21(1):60
The apricot (Prunus armeniaca L.) genome elucidates Rosaceae evolution and beta-carotenoid synthesis.31754435 · Jiang, Fengchao, Zhang, Junhuan, Wang, Sen et al.2020 · 171 citationsHorticulture research. 2019;6:128
The HuangZaoSi Maize Genome Provides Insights into Genomic Variation and Improvement History of Maize.30807824 · Li, Chunhui, Song, Wei, Luo, Yingfeng et al.2019 · 55 citationsMolecular plant. 2019;12(3):402-409
Genome structure and evolution of Antirrhinum majus L.30692677 · Li, Miaomiao, Zhang, Dongfen, Gao, Qiang et al.2019 · 107 citationsNature plants. 2019;5(2):174-183
PacBio full-length cDNA sequencing integrated with RNA-seq reads drastically improves the discovery of splicing transcripts in rice.30288819 · Zhang, Guoqiang, Sun, Min, Wang, Jianfeng et al.2020 · 137 citationsThe Plant journal : for cell and molecular biology. 2019;97(2):296-305
Identification of a G2-like transcription factor, OsPHL3, functions as a negative regulator of flowering in rice by co-expression and reverse genetic analysis.30081823 · Zeng, Liping, Liu, Xue, Zhou, Zhuangzhi et al.2019 · 24 citationsBMC plant biology. 2018;18(1):157
Erratum: Comparative genomics reveals adaptive evolution of Asian tapeworm in switching to a new intermediate host.27808088 · Wang, Shuai, Wang, Sen, Luo, Yingfeng et al.2019 · 13 citationsNature communications. 2016;7:13469
Comparative genomics reveals adaptive evolution of Asian tapeworm in switching to a new intermediate host.27653464 · Wang, Shuai, Wang, Sen, Luo, Yingfeng et al.2019 · 59 citationsNature communications. 2016;7:12845
The rubber tree genome reveals new insights into rubber production and species adaptation.27255837 · Tang, Chaorong, Yang, Meng, Fang, Yongjun et al.2018 · 432 citationsNature plants. 2016;2(6):16073
An integrated RNA-Seq and network study reveals a complex regulation process of rice embryo during seed germination.26116530 · Wei, Ting, He, Zilong, Tan, XinYu et al.2015 · 22 citationsBiochemical and biophysical research communications. 2015;464(1):176-81
Metatranscriptomic analyses of plant cell wall polysaccharide degradation by microorganisms in the cow rumen.25501482 · Dai, Xin, Tian, Yan, Li, Jinting et al.2016 · 236 citationsApplied and environmental microbiology. 2015;81(4):1375-86
Estrogen alters the profile of the transcriptome in river snail Bellamya aeruginosa.25398503 · Lei, Kun, Liu, Ruizhi, An, Li-Hui et al.2015 · 8 citationsEcotoxicology (London, England). 2015;24(2):330-8
Transcriptomic response to estrogen exposure in the male Zhikong scallop, Chlamys farreri.25455372 · An, Li-Hui, Zheng, Bing-Hui, Liu, Rui-Zhi et al.2015 · 8 citationsMarine pollution bulletin. 2014;89(1-2):59-66
Transcriptional profiling of biomass degradation-related genes during Trichoderma reesei growth on different carbon sources.24445169 · Chen, Xiuzhen, Luo, Yingfeng, Yu, Hongtao et al.2014 · 23 citationsJournal of biotechnology. 2014;173:59-64
Detection and genotyping of restriction fragment associated polymorphisms in polyploid crops with a pseudo-reference sequence: a case study in allotetraploid Brassica napus.23706002 · Chen, Xun, Li, Xuemin, Zhang, Bing et al.2014 · 50 citationsBMC genomics. 2013;14:346
The genomes of four tapeworm species reveal adaptations to parasitism.23485966 · Tsai, Isheng J, Zarowiecki, Magdalena, Holroyd, Nancy et al.2013 · 762 citationsNature. 2013;496(7443):57-63
BIGrat: a repeat resolver for pyrosequencing-based re-sequencing with Newbler.23069129 · Zhang, Tongwu, Luo, Yingfeng, Chen, Yaping et al.2013 · 9 citationsBMC research notes. 2012;5:567
Comparative transcriptome analysis of transporters, phytohormone and lipid metabolism pathways in response to arsenic stress in rice (Oryza sativa).22537016 · Yu, Lu-jun, Luo, Ying-feng, Liao, Bin et al.2012 · 216 citationsThe New phytologist. 2012;195(1):97-112
Metagenomic insights into the fibrolytic microbiome in yak rumen.22808161 · Dai, Xin, Zhu, Yaxin, Luo, Yingfeng et al.2013 · 108 citationsPloS one. 2012;7(7):e40430
BIGpre: a quality assessment package for next-generation sequencing data.22289480 · Zhang, Tongwu, Luo, Yingfeng, Liu, Kan et al.2012 · 34 citationsGenomics, proteomics & bioinformatics. 2011;9(6):238-44
Genomic organization and promoter analysis of the Trichomonas vaginalis core histone gene families.19744576 · Cong, Peikuan, Luo, Yingfeng, Bao, Weidong et al.2010 · 8 citationsParasitology international. 2010;59(1):29-34
Complete genome of Phenylobacterium zucineum--a novel facultative intracellular bacterium isolated from human erythroleukemia cell line K562.18700039 · Luo, Yingfeng, Xu, Xiaoli, Ding, Zonghui et al.2008 · 15 citationsBMC genomics. 2008;9:386
Transcriptome analysis of Deinagkistrodon acutus venomous gland focusing on cellular structure and functional aspects using expressed sequence tags.16776837 · Zhang, Bing, Liu, Qinghua, Yin, Wei et al.2006 · 73 citationsBMC genomics. 2006;7:152
Career total: 99 works. 49 are in this corpus.
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