LF
Lucas Fidon
cs.CVeess.IVcs.LGcs.AIcancer biologyImage Processing, Computer-AssistedMeningomyeloceleMRIWhite MatterAlgorithms
On Valency
published · living versionsW_ctyr365s·v1 · currentpublished
Identifying the Best Machine Learning Algorithms for Brain Tumor Segmentation, Progression Assessment, and Overall Survival Prediction in the BRATS Challenge
with Spyridon Bakas, Mauricio Reyes, Andras Jakab, Stefan Bauer +422
1 version
Preprints & journals
34 papers in the corpus · 2017–2025Multiple instance learning with spatial transcriptomics for interpretable patient-level predictions: application in glioblastoma10.1101/2025.10.13.682206v1 · Grouard, S., Esposito, C., El Khoury, J. et al.2025 · 0 citationsbioRxiv
Histology and spatial transcriptomic integration revealed infiltration zone with specific cell composition as a prognostic hotspot in glioblastoma10.1101/2025.10.08.681087v4 · Fidon, L., Lubrano, M., Hoffmann, C. et al.2025 · 2 citationsbioRxiv
CARMIL: Context-Aware Regularization on Multiple Instance Learning models for Whole Slide Images2408.00427v2 · Thiziri Nait Saada, Valentina Di Proietto, Benoit Schmauch et al.2024 · 1 citationarXiv
A Dempster-Shafer Approach to Trustworthy AI With Application to Fetal Brain MRI Segmentation.38198270 · Fidon, Lucas, Aertsen, Michael, Kofler, Florian et al.2024 · 42 citationsIEEE transactions on pattern analysis and machine intelligence. 2024;46(5):3784-3795
Assessment of longitudinal brain development using super-resolution magnetic resonance imaging following fetal surgery for open spina bifida.37161647 · Mufti, N, Chappell, J, Aertsen, M et al.2023 · 6 citationsUltrasound in obstetrics & gynecology : the official journal of the International Society of Ultrasound in Obstetrics and Gynecology. 2023;62(5):707-720
Scaling Self-Supervised Learning for Histopathology with Masked Image Modeling10.1101/2023.07.21.23292757v3 · Filiot, A., Ghermi, R., Olivier, A. et al.2023 · 148 citationsmedRxiv
Trustworthy Deep Learning for Medical Image Segmentation2305.17456v1 · Lucas Fidon2023 · 1 citationarXiv
Fetal brain tissue annotation and segmentation challenge results.37267773 · Payette, Kelly, Li, Hongwei Bran, de Dumast, Priscille et al.2023 · 67 citationsMedical image analysis. 2023;88:102833
Application of Automatic Segmentation on Super-Resolution Reconstruction MR Images of the Abnormal Fetal Brain.36863845 · Deprest, T, Fidon, L, De Keyzer, F et al.2023 · 8 citationsAJNR. American journal of neuroradiology. 2023;44(4):486-491
Longitudinal MRI Evaluation of Brain Development in Fetuses with Congenital Diaphragmatic Hernia around the Time of Fetal Endotracheal Occlusion.36657946 · Emam, D, Aertsen, M, Van der Veeken, L et al.2023 · 13 citationsAJNR. American journal of neuroradiology. 2023;44(2):205-211
Biomedical image analysis competitions: The state of current participation practice2212.08568v2 · Matthias Eisenmann, Annika Reinke, Vivienn Weru et al.2022 · 18 citationsarXiv
A spatio-temporal atlas of the developing fetal brain with spina bifida aperta.37645096 · Fidon, Lucas, Viola, Elizabeth, Mufti, Nada et al.2024 · 20 citationsOpen research Europe. 2021;1:123
blob loss: instance imbalance aware loss functions for semantic segmentation2205.08209v3 · Florian Kofler, Suprosanna Shit, Ivan Ezhov et al.2022 · 30 citationsarXiv
Deep Quality Estimation: Creating Surrogate Models for Human Quality Ratings2205.10355v2 · Florian Kofler, Ivan Ezhov, Lucas Fidon et al.2022 · 3 citationsarXiv
ECONet: Efficient Convolutional Online Likelihood Network for Scribble-based Interactive Segmentation2201.04584v4 · Muhammad Asad, Lucas Fidon, Tom Vercauteren2022 · 9 citationsarXiv
Generalized Wasserstein Dice Loss, Test-time Augmentation, and Transformers for the BraTS 2021 challenge2112.13054v1 · Lucas Fidon, Suprosanna Shit, Ivan Ezhov et al.2021 · 14 citationsarXiv
Partial supervision for the FeTA challenge 20212111.02408v1 · Lucas Fidon, Michael Aertsen, Suprosanna Shit et al.2021 · 4 citationsarXiv
Distributionally Robust Segmentation of Abnormal Fetal Brain 3D MRI2108.04175v1 · Lucas Fidon, Michael Aertsen, Nada Mufti et al.2021 · 26 citationsarXiv
Label-set Loss Functions for Partial Supervision: Application to Fetal Brain 3D MRI Parcellation2107.03846v2 · Lucas Fidon, Michael Aertsen, Doaa Emam et al.2021 · 32 citationsarXiv
Cortical spectral matching and shape and volume analysis of the fetal brain pre- and post-fetal surgery for spina bifida: a retrospective study.33934181 · Mufti, Nada, Aertsen, Michael, Ebner, Michael et al.2021 · 20 citationsNeuroradiology. 2021;63(10):1721-1734
Image Compositing for Segmentation of Surgical Tools Without Manual Annotations.33556005 · Garcia-Peraza-Herrera, Luis C, Fidon, Lucas, D'Ettorre, Claudia et al.2021 · 51 citationsIEEE transactions on medical imaging. 2021;40(5):1450-1460
MONAIfbs: MONAI-based fetal brain MRI deep learning segmentation2103.13314v1 · Marta B.M. Ranzini, Lucas Fidon, S'ebastien Ourselin et al.2021 · 19 citationsarXiv
Explainable-by-design Semi-Supervised Representation Learning for COVID-19 Diagnosis from CT Imaging2011.11719v3 · Abel D'iaz Berenguer, Hichem Sahli, Boris Joukovsky et al.2020 · 8 citationsarXiv
Generalized Wasserstein Dice Score, Distributionally Robust Deep Learning, and Ranger for brain tumor segmentation: BraTS 2020 challenge2011.01614v2 · Lucas Fidon, Sebastien Ourselin, Tom Vercauteren2020 · 54 citationsarXiv
Comparative study of deep learning methods for the automatic segmentation of lung, lesion and lesion type in CT scans of COVID-19 patients2007.15546v4 · Sofie Tilborghs, Ine Dirks, Lucas Fidon et al.2020 · 15 citationsarXiv
Dosimetry-Driven Quality Measure of Brain Pseudo Computed Tomography Generated From Deep Learning for MRI-Only Radiation Therapy Treatment Planning.32417412 · Alvarez Andres, Emilie, Fidon, Lucas, Vakalopoulou, Maria et al.2021 · 43 citationsInternational journal of radiation oncology, biology, physics. 2020;108(3):813-823
Distributionally Robust Deep Learning using Hardness Weighted Sampling2001.02658v4 · Lucas Fidon, Michael Aertsen, Thomas Deprest et al.2020 · 6 citationshttps://www.melba-journal.org/papers/2022:019.html
Incompressible image registration using divergence-conforming B-splines1907.01593v3 · Lucas Fidon, Michael Ebner, Luis C. Garcia-Peraza-Herrera et al.2019 · 3 citationsarXiv
Identifying the Best Machine Learning Algorithms for Brain Tumor Segmentation, Progression Assessment, and Overall Survival Prediction in the BRATS Challenge1811.02629v3 · Spyridon Bakas, Mauricio Reyes, Andras Jakab et al.2018 · 1,441 citationsarXivon Valency
NiftyNet: a deep-learning platform for medical imaging.29544777 · Gibson, Eli, Li, Wenqi, Sudre, Carole et al.2018 · 553 citationsComputer methods and programs in biomedicine. 2018;158:113-122
On the Compactness, Efficiency, and Representation of 3D Convolutional Networks: Brain Parcellation as a Pretext Task1707.01992v1 · Wenqi Li, Guotai Wang, Lucas Fidon et al.2017 · 336 citationsarXiv
Generalised Wasserstein Dice Score for Imbalanced Multi-class Segmentation using Holistic Convolutional Networks1707.00478v4 · Lucas Fidon, Wenqi Li, Luis C. Garcia-Peraza-Herrera et al.2017 · 159 citationsarXiv
Scalable multimodal convolutional networks for brain tumour segmentation1706.08124v1 · Lucas Fidon, Wenqi Li, Luis C. Garcia-Peraza-Herrera et al.2017 · 58 citationsarXiv
ToolNet: Holistically-Nested Real-Time Segmentation of Robotic Surgical Tools1706.08126v2 · Luis C. Garcia-Peraza-Herrera, Wenqi Li, Lucas Fidon et al.2017 · 150 citationsarXiv
Career total: 64 works. 34 are in this corpus.
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