MD
Misko Dzamba
physics.chem-phcs.LGGenome, Viralphysics.comp-phATRTBiological EvolutionChromosome MappingCo-evolutioncond-mat.mtrl-sciCo-speciation
On Valency
published · living versionsW_qspcx4nn·v2 · currentpublished
Quantum-accurate atomistic modeling of enzyme catalysis using a machine learned potential
with Meng Gao, Armin Shayesteh Zadeh, Aniruddha Seal, Siva Dasetty +8
2 versions
Preprints & journals
17 papers in the corpus · 2010–2026Quantum-accurate atomistic modeling of enzyme catalysis using a machine learned potential2609.09293v2 · Meng Gao, Armin Shayesteh Zadeh, Aniruddha Seal et al.2026 · 0 citationsarXivon Valency
The Open Materials 2024 (OMat24) inorganic materials dataset and models.42230827 · Barros-Luque, Luis, Shuaibi, Muhammed, Fu, Xiang et al.2026 · 21 citationsNature computational science. 2026;6(6):642-652
Open Molecular Crystals 2025 (OMC25) dataset and models.41639080 · Gharakhanyan, Vahe, Barroso-Luque, Luis, Yang, Yi et al.2026 · 20 citationsScientific data. 2026;13(1)
FastCSP: Accelerated Molecular Crystal Structure Prediction with Universal Model for Atoms2508.02641v2 · Vahe Gharakhanyan, Yi Yang, Luis Barroso-Luque et al.2025 · 3 citationsarXiv
UMA: A Family of Universal Models for Atoms2506.23971v2 · Brandon M. Wood, Misko Dzamba, Xiang Fu et al.2025 · 86 citationsarXiv
The Open Molecules 2025 (OMol25) Dataset, Evaluations, and Models2505.08762v2 · Daniel S. Levine, Muhammed Shuaibi, Evan Walter Clark Spotte-Smith et al.2025 · 80 citationsarXiv
Learning Smooth and Expressive Interatomic Potentials for Physical Property Prediction2502.12147v2 · Xiang Fu, Brandon M. Wood, Luis Barroso-Luque et al.2025 · 33 citationsarXiv
Open Materials 2024 (OMat24) Inorganic Materials Dataset and Models2410.12771v2 · Luis Barroso-Luque, Muhammed Shuaibi, Xiang Fu et al.2024 · 97 citationsarXiv
Structural Variant in Mitochondrial-Associated Gene (MRPL3) Induces Adult-Onset Neurodegeneration with Memory Impairment in the Mouse.32341096 · Cahill, Lindsay S, Cameron, Jessie M, Winterburn, Julie et al.2020 · 12 citationsThe Journal of neuroscience : the official journal of the Society for Neuroscience. 2020;40(23):4576-4585
Hamiltonian Neural Networks1906.01563v3 · Sam Greydanus, Misko Dzamba, Jason Yosinski2019 · 517 citationsarXiv
Integrated (epi)-Genomic Analyses Identify Subgroup-Specific Therapeutic Targets in CNS Rhabdoid Tumors.27960086 · Torchia, Jonathon, Golbourn, Brian, Feng, Shengrui et al.2017 · 251 citationsCancer cell. 2016;30(6):891-908
Identification of complex genomic rearrangements in cancers using CouGaR.27986820 · Dzamba, Misko, Ramani, Arun K, Buczkowicz, Pawel et al.2018 · 27 citationsGenome research. 2017;27(1):107-117
A novel strain of cynomolgus macaque cytomegalovirus: implications for host-virus co-evolution.27044312 · Russell, Justen N Hoffman, Marsh, Angie K, Willer, David O et al.2016 · 15 citationsBMC genomics. 2016;17:277
Genomic analysis of diffuse intrinsic pontine gliomas identifies three molecular subgroups and recurrent activating ACVR1 mutations.24705254 · Buczkowicz, Pawel, Hoeman, Christine, Rakopoulos, Patricia et al.2014 · 648 citationsNature genetics. 2014;46(5):451-6
Genomic sequencing and characterization of cynomolgus macaque cytomegalovirus.21994460 · Marsh, Angie K, Willer, David O, Ambagala, Aruna P N et al.2012 · 36 citationsJournal of virology. 2011;85(24):12995-3009
SHRiMP2: sensitive yet practical SHort Read Mapping.21278192 · David, Matei, Dzamba, Misko, Lister, Dan et al.2011 · 348 citationsBioinformatics (Oxford, England). 2011;27(7):1011-2
Detecting copy number variation with mated short reads.20805290 · Medvedev, Paul, Fiume, Marc, Dzamba, Misko et al.2011 · 176 citationsGenome research. 2010;20(11):1613-22
Career total: 70 works. 17 are in this corpus.
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