KC
Kwanghun Chung
neuroscienceBrain MappingBrainbioengineeringeess.IVNeuronsq-bio.NCacoustic stimulationactive neuronal ensemblesAlgorithms
On Valency
published · living versionsW_qwe58ep4·v1 · currentpublished
The Open Connectome Project Data Cluster: Scalable Analysis and Vision for High-Throughput Neuroscience
with Randal Burns, William Gray Roncal, Dean Kleissas, Kunal Lillaney +15
1 version
Preprints & journals
67 papers in the corpus · 2007–2025Uniform volumetric single-cell processing for organ-scale molecular phenotyping.39856430 · Yun, Dae Hee, Park, Young-Gyun, Cho, Jae Hun et al.2025 · 20 citationsNature biotechnology. 2025;43(12):2031-2042
CAA-related enlarged perivascular spaces are associated with abnormal angioarchitecture in human brain tissue: A key role for white matter atrophy?40919822 · Giraud, Marion, Yun, Dae Hee, Munting, Leon P et al.2025 · 1 citationJournal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism. 2025:271678X251369256
The noncoding circular RNA circHomer1 regulates synaptic development and experience-dependent plasticity in the mouse visual cortex.41054542 · Jenks, Kyle R, Cai, Ying, Nayan, Marvin Eduarte et al.2025 · 4 citationsiScience. 2025;28(9):113421
Glioblastoma Cortical Organoids Recapitulate Cell-State Heterogeneity and Intercellular Transfer.39373549 · Mangena, Vamsi, Chanoch-Myers, Rony, Sartore, Rafaela et al.2025 · 48 citationsCancer discovery. 2025;15(2):299-315
Inflammatory and anti-inflammatory cytokines bidirectionally modulate amygdala circuits regulating anxiety.40199321 · Lee, Byeongjun, Kwon, Jeong-Tae, Jeong, Yire et al.2025 · 73 citationsCell. 2025;188(8):2190-2202.e15
The noncoding circular RNA circHomer1 regulates synaptic development and experience-dependent plasticity in mouse visual cortex10.1101/2024.07.19.603416v3 · Jenks, K. R., Cai, Y., Nayan, M. E. et al.2024 · 2 citationsbioRxiv
Epitope-preserving magnified analysis of proteome (eMAP).34767453 · Park, Joha, Khan, Sarim, Yun, Dae Hee et al.2024 · 50 citationsScience advances. 2021;7(46):eabf6589
Protection of tissue physicochemical properties using polyfunctional crosslinkers.30556815 · Park, Young-Gyun, Sohn, Chang Ho, Chen, Ritchie et al.2024 · 497 citationsNature biotechnology. 2018
TISSUE CLEARING.35128463 · Richardson, Douglas S, Guan, Webster, Matsumoto, Katsuhiko et al.2024 · 197 citationsNature reviews. Methods primers. 2021;1(1)
Integrated platform for multiscale molecular imaging and phenotyping of the human brain.38870291 · Park, Juhyuk, Wang, Ji, Guan, Webster et al.2024 · 56 citationsScience (New York, N.Y.). 2024;384(6701):eadh9979
Integrated platform for multi-scale molecular imaging and phenotyping of the human brain10.1101/2022.03.13.484171v3 · Park, J., Wang, J., Guan, W. et al.2022 · 13 citationsbioRxiv
The Open Connectome Project Data Cluster: Scalable Analysis and Vision for High-Throughput Neuroscience.24401992 · Burns, Randal, Roncal, William Gray, Kleissas, Dean et al.2023 · 57 citationsScientific and statistical database management : International Conference, SSDBM ... : proceedings. International Conference on Scientific and Statistical Database Management. 2013
Mapping thalamic innervation to individual L2/3 pyramidal neurons and modeling their 'readout' of visual input.36732641 · Balcioglu, Aygul, Gillani, Rebecca, Doron, Michael et al.2023 · 32 citationsNature neuroscience. 2023;26(3):470-480
Near-Infrared Fluorescent Carbon Nanotube Sensors for the Plant Hormone Family Gibberellins.36651830 · Boonyaves, Kulaporn, Ang, Mervin Chun-Yi, Park, Minkyung et al.2023 · 75 citationsNano letters. 2023;23(3):916-924
Vertical full-colour micro-LEDs via 2D materials-based layer transfer.36725999 · Shin, Jiho, Kim, Hyunseok, Sundaram, Suresh et al.2023 · 302 citationsNature. 2023;614(7946):81-87
Filopodia are a structural substrate for silent synapses in adult neocortex.36450984 · Vardalaki, Dimitra, Chung, Kwanghun, Harnett, Mark T2022 · 103 citationsNature. 2022;612(7939):323-327
Axon Tracing and Centerline Detection using Topologically-Aware 3D U-Nets.36085649 · Pollack, Dylan, Gjesteby, Lars A, Snyder, Michael et al.2022 · 7 citationsAnnual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference. 2022;2022:238-242
Spatial mapping of protein composition and tissue organization: a primer for multiplexed antibody-based imaging.34811556 · Hickey, John W, Neumann, Elizabeth K, Radtke, Andrea J et al.2022 · 348 citationsNature methods. 2022;19(3):284-295
Functional dissection of neural circuitry using a genetic reporter for fMRI.35241803 · Ghosh, Souparno, Li, Nan, Schwalm, Miriam et al.2022 · 25 citationsNature neuroscience. 2022;25(3):390-398
Autism genes converge on asynchronous development of shared neuron classes.35110736 · Paulsen, Bruna, Velasco, Silvia, Kedaigle, Amanda J et al.2022 · 487 citationsNature. 2022;602(7896):268-273
Brain-wide mapping reveals that engrams for a single memory are distributed across multiple brain regions.35379803 · Roy, Dheeraj S, Park, Young-Gyun, Kim, Minyoung E et al.2022 · 244 citationsNature communications. 2022;13(1):1799
Basic principles of hydrogel-based tissue transformation technologies and their applications.34358468 · Choi, Seo Woo, Guan, Webster, Chung, Kwanghun2022 · 109 citationsCell. 2021;184(16):4115-4136
Publisher Correction: A metastasis map of human cancer cell lines.34732899 · Jin, Xin, Demere, Zelalem, Nair, Karthik et al.2021 · 7 citationsNature. 2021;599(7885):E7
Cellular anatomy of the mouse primary motor cortex.34616071 · Muñoz-Castañeda, Rodrigo, Zingg, Brian, Matho, Katherine S et al.2021 · 317 citationsNature. 2021;598(7879):159-166
Spatial mapping of protein composition and tissue organization: a primer for multiplexed antibody-based imaging2107.07953v1 · John W. Hickey, Elizabeth K. Neumann, Andrea J. Radtke et al.2021 · 350 citationsarXiv
Multiscale 3D phenotyping of human cerebral organoids.33293587 · Albanese, Alexandre, Swaney, Justin M, Yun, Dae Hee et al.2021 · 95 citationsScientific reports. 2020;10(1):21487
Divergent pallidal pathways underlying distinct Parkinsonian behavioral deficits.33723433 · Lilascharoen, Varoth, Wang, Eric Hou-Jen, Do, Nam et al.2021 · 99 citationsNature neuroscience. 2021;24(4):504-515
Publisher Correction: Tissue clearing and its applications in neuroscience.32152524 · Ueda, Hiroki R, Ertürk, Ali, Chung, Kwanghun et al.2021 · 72 citationsNature reviews. Neuroscience. 2020;21(5):298
A metastasis map of human cancer cell lines.33299191 · Jin, Xin, Demere, Zelalem, Nair, Karthik et al.2021 · 468 citationsNature. 2020;588(7837):331-336
Functional dissection of neural circuitry using a genetic reporter for fMRI10.1101/2020.12.27.424403v1 · Ghosh, S., Li, N., Bartelle, B. B. et al.2020 · 25 citationsbioRxiv
Divergent pallidal pathways underlying distinct Parkinsonian behavioral deficits10.1101/2020.11.27.401554v1 · Lim, B., Lilascharoen, V., Wang, E. H.-J. et al.2020 · 99 citationsbioRxiv
Human brain organoids reveal accelerated development of cortical neuron classes as a shared feature of autism risk genes10.1101/2020.11.10.376509v1 · Paulsen, B., Velasco, S., Kedaigle, A. J. et al.2020 · 20 citationsbioRxiv
Depolarization signatures map gold nanorods within biological tissue.29201136 · Lippok, Norman, Villiger, Martin, Albanese, Alexandre et al.2020 · 37 citationsNature photonics. 2017;11:583-588
Elasticizing tissues for reversible shape transformation and accelerated molecular labeling.32424271 · Ku, Taeyun, Guan, Webster, Evans, Nicholas B et al.2020 · 99 citationsNature methods. 2020;17(6):609-613
Active Learning Pipeline for Brain Mapping in a High Performance Computing Environment2006.14684v1 · Adam Michaleas, Lars A. Gjesteby, Michael Snyder et al.2020 · 7 citationsarXiv
Tissue clearing and its applications in neuroscience.31896771 · Ueda, Hiroki R, Ertürk, Ali, Chung, Kwanghun et al.2020 · 663 citationsNature reviews. Neuroscience. 2020;21(2):61-79
3D mapping reveals network-specific amyloid progression and subcortical susceptibility in mice.31602409 · Gail Canter, Rebecca, Huang, Wen-Chin, Choi, Heejin et al.2020 · 98 citationsCommunications biology. 2019;2:360
Self-Supervised Feature Extraction for 3D Axon Segmentation2004.09629v1 · Tzofi Klinghoffer, Peter Morales, Young-Gyun Park et al.2020 · 21 citationsarXiv
Multi-sensory Gamma Stimulation Ameliorates Alzheimer's-Associated Pathology and Improves Cognition.30879788 · Martorell, Anthony J, Paulson, Abigail L, Suk, Ho-Jun et al.2020 · 833 citationsCell. 2019;177(2):256-271.e22
Whole-Brain Analysis of Cells and Circuits by Tissue Clearing and Light-Sheet Microscopy.30381424 · Mano, Tomoyuki, Albanese, Alexandre, Dodt, Hans-Ulrich et al.2019 · 60 citationsThe Journal of neuroscience : the official journal of the Society for Neuroscience. 2018;38(44):9330-9337
Npas4 Is a Critical Regulator of Learning-Induced Plasticity at Mossy Fiber-CA3 Synapses during Contextual Memory Formation.29429933 · Weng, Feng-Ju, Garcia, Rodrigo I, Lutzu, Stefano et al.2019 · 114 citationsNeuron. 2018;97(5):1137-1152.e5
Brain-wide mapping of contextual fear memory engram ensembles supports the dispersed engram complex hypothesis10.1101/668483v1 · Roy, D. S., Park, Y.-G., Ogawa, S. K. et al.2019 · 40 citationsbioRxiv
Scalable image processing techniques for quantitative analysis of volumetric biological images from light-sheet microscopy10.1101/576595v1 · Swaney, J., Kamentsky, L., Evans, N. B. et al.2019 · 31 citationsbioRxiv
Kill or be killed: The epic battle between Zika virus and cells revealed.28275155 · Chung, Kwanghun2019 · 0 citationsScience translational medicine. 2017;9(380)
Modeling human brain development.28592564 · Chung, Kwanghun2019 · 0 citationsScience translational medicine. 2017;9(393)
Accelerating the production of insulating brain cells.28701477 · Chung, Kwanghun2019 · 0 citationsScience translational medicine. 2017;9(398)
Label-free volumetric optical imaging of intact murine brains.28401897 · Ren, Jian, Choi, Heejin, Chung, Kwanghun et al.2018 · 22 citationsScientific reports. 2017;7:46306
In situ expansion of engineered human liver tissue in a mouse model of chronic liver disease.28724577 · Stevens, Kelly R, Scull, Margaret A, Ramanan, Vyas et al.2018 · 170 citationsScience translational medicine. 2017;9(399)
Self-organized developmental patterning and differentiation in cerebral organoids.28283582 · Renner, Magdalena, Lancaster, Madeline A, Bian, Shan et al.2017 · 415 citationsThe EMBO journal. 2017;36(10):1316-1329
Toward off-the-shelf adoptive T cell therapies.28424328 · Chung, Kwanghun2017 · 1 citationScience translational medicine. 2017;9(386)
Career total: 111 works. 67 are in this corpus.Showing the 50 most recent.
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