QJ
Qiao Jin
cs.CLcs.AIcs.IRcs.LGArtificial Intelligencecs.CVq-bio.QMComputational Biologycs.HClarge language models
On Valency
published · living versionsW_f25bmun9·v1 · currentpublished
Incentivizing Tool-Use Reinforcement Learning for Post-Arrival Emergency Care Prediction
with Pengfei Hu, Chenwei Wu, Jun Deng, Zhiyong Lu +2
1 version
Preprints & journals
93 papers in the corpus · 2018–2026Incentivizing Tool-Use Reinforcement Learning for Post-Arrival Emergency Care Prediction2610.21449v2 · Pengfei Hu, Chenwei Wu, Qiao Jin et al.2026 · 0 citationsarXivon Valency
Iterative Design and Evaluation of a VR Nursing Training System: Insights from Clinicians and Student Learners2610.19152v1 · Danhua Zhang, Cynthia Bradley, Christopher Kissell et al.2026 · 0 citationsarXiv
Do AI chatbots find what experts would? Effects of model, user role, and sample size on study retrieval for medical questions2608.13786v2 · Qingfang Liu, Qiao Jin, Joe D. Menke et al.2026 · 0 citationsarXiv
Tutorial: guidance on the use of large language models for medical research.42498804 · Jin, Qiao, Wan, Nicholas, Leaman, Robert et al.2026 · 2 citationsNature protocols. 2026
Knowledge-guided contextual gene set analysis with large language models.42412828 · Wang, Zhizheng, Day, Chi-Ping, Wei, Chih-Hsuan et al.2026 · 0 citationsBioinformatics (Oxford, England). 2026;42(1)
Empowering biomedical evidence exploration and synthesis with deep knowledge graph research.42569156 · Wang, Zifeng, Chen, Zheng, Yang, Ziwei et al.2026 · 3 citationsNature machine intelligence. 2026;8(7):1142-1156
A Curated Dataset for Question Answering on Laboratory Test Reference Ranges and Interpretation.42270658 · Bhasuran, Balu, Jin, Qiao, Deville, Angelique et al.2026 · 0 citationsScientific data. 2026;13(1)
Large Language Models Lack Temporal Awareness of Medical Knowledge2605.13045v1 · Zihan Guan, Qiao Jin, Guangzhi Xiong et al.2026 · 0 citationsarXiv
MedHopQA: A Disease-Centered Multi-Hop Reasoning Benchmark and Evaluation Framework for LLM-Based Biomedical Question Answering.42389245 · Islamaj, Rezarta, Leaman, Robert, Chan, Joey et al.2026 · 0 citationsArXiv. 2026
Cell-o1 : training LLMs to solve single-cell reasoning puzzles with reinforcement learning.42082388 · Fang, Yin, Jin, Qiao, Xiong, Guangzhi et al.2026 · 2 citationsBioinformatics (Oxford, England). 2026;42(5)
Med-V1: Small Language Models for Zero-shot and Scalable Biomedical Evidence Attribution2603.05308v4 · Qiao Jin, Yin Fang, Lauren He et al.2026 · 0 citationsarXiv
Thinking by Subtraction: Confidence-Driven Contrastive Decoding for LLM Reasoning2602.18232v1 · Lexiang Tang, Weihao Gao, Bingchen Zhao et al.2026 · 0 citationsarXiv
CT-Bench: A Benchmark for Multimodal Lesion Understanding in Computed Tomography2602.14879v2 · Qingqing Zhu, Qiao Jin, Tejas S. Mathai et al.2026 · 0 citationsarXiv
MedHopQA: a disease-centred multi-hop reasoning benchmark and evaluation framework for LLM-based biomedical question answering.42742456 · Islamaj, Rezarta, Leaman, Robert, Chan, Joey et al.2026 · 0 citationsDatabase : the journal of biological databases and curation. 2026;2026
Gene-R1: Reasoning with Data-Augmented Lightweight LLMs for Gene Set Analysis.41758163 · Wang, Zhizheng, Yang, Yifan, Jin, Qiao et al.2026 · 0 citationsPacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. 2026;31:494-507
DeepEvidence: Empowering Biomedical Discovery with Deep Knowledge Graph Research2601.11560v1 · Zifeng Wang, Zheng Chen, Ziwei Yang et al.2025 · 0 citationsarXiv
AgentMD: Empowering language agents for risk prediction with large-scale clinical tool learning.41130954 · Jin, Qiao, Wang, Zhizheng, Yang, Yifan et al.2025 · 22 citationsNature communications. 2025;16(1):9377
GenLARP: Enabling Immersive Live Action Role-Play through LLM-Generated Worlds and Characters2510.14277v1 · Yichen Yu, Yifan Jiang, Mandy Lui et al.2025 · 0 citationsarXiv
Adversarial prompt and fine-tuning attacks threaten medical large language models.41068092 · Yang, Yifan, Jin, Qiao, Huang, Furong et al.2025 · 19 citationsNature communications. 2025;16(1):9011
A foundation model for human-AI collaboration in medical literature mining.40993125 · Wang, Zifeng, Cao, Lang, Jin, Qiao et al.2025 · 28 citationsNature communications. 2025;16(1):8361
Risks of AI scientists: prioritizing safeguarding over autonomy.40968279 · Tang, Xiangru, Jin, Qiao, Zhu, Kunlun et al.2025 · 53 citationsNature communications. 2025;16(1):8317
Gene-R1: Reasoning with Data-Augmented Lightweight LLMs for Gene Set Analysis.41479449 · Wang, Zhizheng, Yang, Yifan, Jin, Qiao et al.2026 · 0 citationsArXiv. 2025
Accelerating clinical evidence synthesis with large language models.40775042 · Wang, Zifeng, Cao, Lang, Danek, Benjamin et al.2026 · 67 citationsNPJ digital medicine. 2025;8(1):509
GeneAgent: self-verification language agent for gene-set analysis using domain databases.40721871 · Wang, Zhizheng, Jin, Qiao, Wei, Chih-Hsuan et al.2025 · 65 citationsNature methods. 2025;22(8):1677-1685
How well do multimodal LLMs interpret CT scans? An auto-evaluation framework for analyses.40578543 · Zhu, Qingqing, Hou, Benjamin, Mathai, Tejas Sudarshan et al.2025 · 8 citationsJournal of biomedical informatics. 2025;168:104864
MedCite: Can Language Models Generate Verifiable Text for Medicine?2506.06605v1 · Xiao Wang, Mengjue Tan, Qiao Jin et al.2025 · 1 citationarXiv
Knowledge-guided Contextual Gene Set Analysis Using Large Language Models.40503027 · Wang, Zhizheng, Day, Chi-Ping, Wei, Chih-Hsuan et al.2026 · 0 citationsArXiv. 2025
LabQAR: A Manually Curated Dataset for Question Answering on Laboratory Test Reference Ranges and Interpretation.40502613 · Bhasuran, Balu, Jin, Qiao, Deville, Angelique et al.2026 · 0 citationsmedRxiv : the preprint server for health sciences. 2025
Developing Large Language Models for Clinical Research Using One Million Clinical Trials2505.16097v2 · Zifeng Wang, Jiacheng Lin, Qiao Jin et al.2025 · 0 citationsarXiv
Recommending Clinical Trials for Online Patient Cases using Artificial Intelligence.41726429 · Chan, Joey, Jin, Qiao, Wan, Nicholas et al.2026 · 0 citationsAMIA ... Annual Symposium proceedings. AMIA Symposium. 2024;2024:228-237
Humans and Large Language Models in Clinical Decision Support: A Study with Medical Calculators.41726433 · Wan, Nicholas C, Jin, Qiao, Chan, Joey et al.2026 · 0 citationsAMIA ... Annual Symposium proceedings. AMIA Symposium. 2024;2024:1305-1314
Leveraging long context in retrieval augmented language models for medical question answering.40316710 · Zhang, Gongbo, Xu, Zihan, Jin, Qiao et al.2025 · 79 citationsNPJ digital medicine. 2025;8(1):239
Benchmarking large language models for biomedical natural language processing applications and recommendations.41031069 · Chen, Qingyu, Hu, Yan, Peng, Xueqing et al.2025 · 0 citationsArXiv. 2025
Recommending Clinical Trials for Online Patient Cases using Artificial Intelligence2504.20059v1 · Joey Chan, Qiao Jin, Nicholas Wan et al.2025 · 0 citationsarXiv
Recommending Clinical Trials for Online Patient Cases using Artificial Intelligence.40735091 · Chan, Joey, Jin, Qiao, Wan, Nicholas et al.2026 · 0 citationsArXiv. 2025
Beyond Multiple-Choice Accuracy: Real-World Challenges of Implementing Large Language Models in Healthcare.40198845 · Yang, Yifan, Jin, Qiao, Zhu, Qingqing et al.2025 · 12 citationsAnnual review of biomedical data science. 2025;8(1):305-316
Benchmarking large language models for biomedical natural language processing applications and recommendations.40188094 · Chen, Qingyu, Hu, Yan, Peng, Xueqing et al.2025 · 217 citationsNature communications. 2025;16(1):3280
Preliminary analysis of the impact of lab results on large language model generated differential diagnoses.40102561 · Bhasuran, Balu, Jin, Qiao, Xie, Yuzhang et al.2026 · 22 citationsNPJ digital medicine. 2025;8(1):166
Supervising the search process produces reliable and generalizable information-seeking agents2502.13957v3 · Guangzhi Xiong, Qiao Jin, Xiao Wang et al.2025 · 1 citationarXiv
A foundation model for human-AI collaboration in medical literature mining.40735107 · Wang, Zifeng, Cao, Lang, Jin, Qiao et al.2025 · 1 citationArXiv. 2025
Improving Retrieval-Augmented Generation in Medicine with Iterative Follow-up Questions.39670371 · Xiong, Guangzhi, Jin, Qiao, Wang, Xiao et al.2024 · 64 citationsPacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. 2025;30:199-214
A MapReduce Approach to Effectively Utilize Long Context Information in Retrieval Augmented Language Models2412.15271v1 · Gongbo Zhang, Zihan Xu, Qiao Jin et al.2024 · 0 citationsarXiv
Adversarial Attacks on Large Language Models in Medicine.39398204 · Yang, Yifan, Jin, Qiao, Huang, Furong et al.2025 · 5 citationsArXiv. 2024
Ensuring Safety and Trust: Analyzing the Risks of Large Language Models in Medicine.41031074 · Yang, Yifan, Jin, Qiao, Leaman, Robert et al.2025 · 3 citationsArXiv. 2024
Matching Patients to Clinical Trials with Large Language Models.37576126 · Jin, Qiao, Wang, Zifeng, Floudas, Charalampos S et al.2025 · 286 citationsArXiv. 2024
Humans and Large Language Models in Clinical Decision Support: A Study with Medical Calculators2411.05897v2 · Nicholas Wan, Qiao Jin, Joey Chan et al.2024 · 2 citationsarXiv
Evaluating the Impact of Lab Test Results on Large Language Models Generated Differential Diagnoses from Clinical Case Vignettes.41031079 · Bhasuran, Balu, Jin, Qiao, Xie, Yuzhang et al.2025 · 0 citationsArXiv. 2024
Beyond Multiple-Choice Accuracy: Real-World Challenges of Implementing Large Language Models in Healthcare.41031065 · Yang, Yifan, Jin, Qiao, Zhu, Qingqing et al.2025 · 0 citationsArXiv. 2024
A Preliminary Study of o1 in Medicine: Are We Closer to an AI Doctor?2409.15277v1 · Yunfei Xie, Juncheng Wu, Haoqin Tu et al.2024 · 15 citationsarXiv
Enhancing Large Language Models with Domain-specific Retrieval Augment Generation: A Case Study on Long-form Consumer Health Question Answering in Ophthalmology.41031070 · Gilson, Aidan, Ai, Xuguang, Arunachalam, Thilaka et al.2025 · 6 citationsArXiv. 2024
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