Jianhua Yao

0000-0001-9157-9596

cs.CVbioinformaticsAlgorithmsArtificial Intelligencecs.LGDeep LearningSingle-Cell AnalysisTomography, X-Ray ComputedSubtraction TechniqueImage Processing, Computer-Assisted

On Valency

published · living versions

Physics-based simulation unlocks scaling laws for generalizable MRI reconstruction

with Hong Shang, Zijian Zhan, Sen Jia, Xiang Fan +8

1 version

W_pct5ewkxv1 · current

Unsupervised Category Discovery via Looped Deep Pseudo-Task Optimization Using a Large Scale Radiology Image Database

W_4f2yhtwwv1

Anatomy-specific classification of medical images using deep convolutional nets

W_r7td4em6v1

Preprints & journals

292 papers in the corpus · 1999–2026

scTransMIL bridges patient-level disease states and single-cell transcriptomics for cancer screening and heterogeneity inference.

Tang, Zhenchao, Wang, Fang, Yang, Fan et al.

0 citations

428754452026Nature communications. 2026;17(1)

A blinded, prospective benchmark of in silico antibody discovery anchored to experimental affinity and developability.

Erasmus, M Frank, Bedinger, Daniel, Hopkins, Elizabeth et al.

0 citations

426188052026Nature biotechnology. 2026

Seeking Common Ground While Reserving Differences: Multiple Anatomy Collaborative Framework for Undersampled MRI Reconstruction.

Yan, Jiangpeng, Yu, Chenghui, Chen, Hanbo et al.

4 citations

408645802026IEEE journal of biomedical and health informatics. 2026;30(8):7296-7308

AI proteomics: from protein identification to virtual cells.

Sun, Yingying, A, Jun, Liu, Zhiwei et al.

3 citations

425218242026Nature methods. 2026;23(9):1697-1709

UniPert-G2CP bridges genetic and chemical screens from molecular representation to phenotype modeling.

Li, Yiming, Zeng, Min, Zhu, Jun et al.

2 citations

424978672026Cell. 2026;189(16):4946-4963.e8

Feasibility of early detection of left ventricular diastolic dysfunction in hypertensive patients using four-dimensional flow cardiac magnetic resonance.

Peng, Kun, Zhao, Jiang, Wang, Zijian et al.

0 citations

424760592026European journal of radiology. 2026;204:113084

Collaborative instance-level and bag-level multiple instance learning with label disambiguation for whole slide image analysis.

Zhao, Yu, Wang, Jun, Wang, Chao et al.

0 citations

424707942026Medical image analysis. 2026;113:104192

Single-cell spatial transcriptomics and snRNA-seq decoding the organizational principles of functional modules in the mouse amygdala

Bin, Y., Chen, X., Xu, Y.-H. et al.

0 citations

10.64898/2026.06.04.730249v12026bioRxiv

Digital decoding tissue microenvironment heterogeneity from spatial proteomics through graph-enhanced transfer learning.

Li, Yuan, Kong, Qian, Wu, Zihan et al.

0 citations

422027792026Cell systems. 2026;17(7):101612

H2O: A Foundation Model Bridging Histopathology to Spatial Multi-Omics Profiling

Gu, Y., Wu, Z., Yan, R. et al.

1 citation

10.64898/2026.04.21.717342v12026bioRxiv

Scalable homology detection with ERAST.

Jiang, Yinuo, He, Bing, Wu, Zihan et al.

1 citation

419226942026Nature biotechnology. 2026

Functional protein design and enhancement with ontology reinforcement iteration.

He, Bing, Qin, Chenchen, Zhao, Yu et al.

4 citations

418570322026Nature communications. 2026;17(1)

Position Paper: Artificial Intelligence in Medical Image Analysis: Advances, Clinical Translation, and Emerging Frontiers.

Panayides, A S, Chen, H, Filipovic, N D et al.

13 citations

414749932025IEEE journal of biomedical and health informatics. 2025;PP

Structural determinants of IGHV1-69 public antibodies conferring resilience to SARS-CoV-2 antigenic escape

Niu, C., Huang, X., Yan, Q. et al.

0 citations

10.64898/2025.12.19.695307v22025bioRxiv

AI recognizes convergent somatic hypermutation signatures to allow the discovery of variant-resilient broadly neutralizing antibodies

Yan, Q., Huang, X., Liu, B. et al.

3 citations

10.64898/2025.12.10.693372v22025bioRxiv

De novo design of epitope-specific antibodies via a structure-driven computational workflow.

Wu, Fandi, Zhao, Yu, Wu, JiaXiang et al.

15 citations

413659232026Nature communications. 2025;17(1):625

A pre-trained large generative model for translating single-cell transcriptomes to proteomes.

Liu, Linjing, Li, Wei, Wang, Fang et al.

6 citations

411938882026Nature biomedical engineering. 2026;10(8):1672-1691

Modeling myocardial physiological growth using human pluripotent stem cell derived cardiomyocytes and 3D cardiac microtissues.

Liu, Chang, Yao, Jianhua, Wu, Xinying et al.

1 citation

411658592026Cellular and molecular life sciences : CMLS. 2025;82(1):377

A synergistic generative-ranking framework for tailored design of therapeutic single-domain antibodies.

Kong, Yu, Shi, Jiale, Wu, Fandi et al.

2 citations

411623862025Cell discovery. 2025;11(1):85

A Population-scale Single-cell Spatial Transcriptomic Atlas of the Human Cortex

Han, L., Liu, Z., Wang, L. et al.

2 citations

10.1101/2025.10.13.681959v22025bioRxiv

A pan-disease and population-level single-cell TCRαβ repertoire reference.

Xue, Ziwei, Wu, Lize, Gao, Bing et al.

8 citations

410873272025Cell discovery. 2025;11(1):82

A Generative Foundation Model for Antibody Design

Wang, R., Wu, F., Shi, J. et al.

5 citations

10.1101/2025.09.12.675771v12025bioRxiv

Single-Cell Sequencing Identifies the Crucial Role of Mitochondrial Fission-Fusion Imbalance in Heart Failure Progression.

He, Tao, Sha, Jianmei, Hu, Yuxin et al.

2 citations

407115042025Journal of cardiovascular translational research. 2025;18(5):1253-1267

Steering Protein Language Models

Long-Kai Huang, Rongyi Zhu, Bing He et al.

0 citations

2509.07983v22025arXiv

Genomic Touchstone: Benchmarking Genomic Language Models in the Context of the Central Dogma

Wang, Y., Cai, Z., Zeng, Q. et al.

5 citations

10.1101/2025.06.25.661622v12025bioRxiv

NeuroXiv: AI-powered open databasing and dynamic mining of brain-wide neuron morphometry.

Jiang, Shengdian, Wang, Lijun, Yun, Zhixi et al.

8 citations

403016202025Nature methods. 2025;22(6):1195-1198

scTransMIL Bridges Patient-Level Phenotypes and Single-Cell Transcriptomics for Cancer Screening and Heterogeneity Inference

Tang, Z., Wang, F., Yang, F. et al.

3 citations

10.1101/2025.04.22.649948v12025bioRxiv

Application of Deep Generative Models for Anomaly Detection in Complex Financial Transactions

Tengda Tang, Jianhua Yao, Yixian Wang et al.

13 citations

2504.15491v12025arXiv

Single-cell spatial transcriptome atlas and whole-brain connectivity of the macaque claustrum.

Lei, Ying, Liu, Yuxuan, Wang, Mingli et al.

39 citations

401851022025Cell. 2025;188(14):3863-3881.e25

Learning With Noisy Labels Over Imbalanced Subpopulations.

Chen, Mingcai, Zhao, Yu, He, Bing et al.

15 citations

386914322025IEEE transactions on neural networks and learning systems. 2025;36(4):6544-6555

Molecular pathways and diagnosis in spatially resolved Alzheimer's hippocampal atlas.

Wang, Pan, Han, Lei, Wang, Lifang et al.

30 citations

401689862025Neuron. 2025;113(13):2123-2140.e9

Single-cell spatial transcriptomic atlas of the whole mouse brain.

Han, Lei, Liu, Zhen, Jing, Zehua et al.

58 citations

401325892025Neuron. 2025;113(13):2141-2160.e9

Strategic priorities for transformative progress in advancing biology with proteomics and artificial intelligence

Yingying Sun, Jun A, Zhiwei Liu et al.

0 citations

2502.15867v12025arXiv

Integrating protein language models and automatic biofoundry for enhanced protein evolution.

Zhang, Qiang, Chen, Wanyi, Qin, Ming et al.

95 citations

399346382025Nature communications. 2025;16(1):1553

Genetic-to-chemical perturbation transfer learning through unified multimodal molecular representations

Li, Y., Zeng, M., Zhu, J. et al.

0 citations

10.1101/2025.02.02.635055v22025bioRxiv

Fast and accurate modeling of TCR-peptide-MHC complexes using tFold-TCR

Wu, F., Zhao, Y., Xiao, Y. et al.

20 citations

10.1101/2025.01.12.632367v22025bioRxiv

Evaluation of T Cell Receptor Construction Methods from scRNA-Seq Data.

Tian, Ruonan, Yu, Zhejian, Xue, Ziwei et al.

2 citations

396669492025Genomics, proteomics & bioinformatics. 2025;22(6)

Spatial-DC: a robust deep learning-based method for deconvolution of spatial proteomics

Li, Y., Kong, Q., Wu, Z. et al.

0 citations

10.1101/2024.12.18.629082v22024bioRxiv

Stock Type Prediction Model Based on Hierarchical Graph Neural Network

Jianhua Yao, Yuxin Dong, Jiajing Wang et al.

10 citations

2412.06862v12024arXiv

Deep learning using histological images for gene mutation prediction in lung cancer: a multicentre retrospective study.

Zhao, Yu, Xiong, Shan, Ren, Qin et al.

66 citations

396530542025The Lancet. Oncology. 2025;26(1):136-146

Integrative mapping of human CD8+ T cells in inflammation and cancer.

Xue, Ziwei, Wu, Lize, Tian, Ruonan et al.

35 citations

396141112025Nature methods. 2025;22(2):435-445

Generative learning assisted state-of-health estimation for sustainable battery recycling with random retirement conditions.

Tao, Shengyu, Ma, Ruifei, Zhao, Zixi et al.

154 citations

395784842024Nature communications. 2024;15(1):10154

scStateDynamics: deciphering the drug-responsive tumor cell state dynamics by modeling single-cell level expression changes.

Guo, Wenbo, Li, Xinqi, Wang, Dongfang et al.

8 citations

395741112024Genome biology. 2024;25(1):297

An adaptive autoregressive diffusion approach to design active humanized antibody and nanobody

Ma, J., Wu, F., Xu, T. et al.

3 citations

10.1101/2024.10.22.619416v12024bioRxiv

Modal-nexus auto-encoder for multi-modality cellular data integration and imputation.

Tang, Zhenchao, Chen, Guanxing, Chen, Shouzhi et al.

37 citations

394248612024Nature communications. 2024;15(1):9021

Author Correction: BigNeuron: a resource to benchmark and predict performance of algorithms for automated tracing of neurons in light microscopy datasets.

Manubens-Gil, Linus, Zhou, Zhi, Chen, Hanbo et al.

3 citations

390903832025Nature methods. 2024;21(10):1959

Cross-species single-cell spatial transcriptomic atlases of the cerebellar cortex.

Hao, Shijie, Zhu, Xiaojia, Huang, Zhi et al.

58 citations

393258892024Science (New York, N.Y.). 2024;385(6716):eado3927

Unveiling the Potential of Graph Neural Networks in SME Credit Risk Assessment

Bingyao Liu, Iris Li, Jianhua Yao et al.

20 citations

2409.17909v12024arXiv

IgGM: A Generative Model for Functional Antibody and Nanobody Design

Wang, R., Wu, F., Gao, X. et al.

24 citations

10.1101/2024.09.19.613838v22024bioRxiv

Dynamic Fraud Detection: Integrating Reinforcement Learning into Graph Neural Networks

Yuxin Dong, Jianhua Yao, Jiajing Wang et al.

29 citations

2409.09892v22024arXiv

Career total: 562 works. 292 are in this corpus.Showing the 50 most recent.

Profile built from the corpus for this byline.

562

works

21.3K

citations

h-index

Corpus papers per year

Corpus papers per year, 1999 to 2026. Busiest year 2022, 31 papers.
Year	Papers
1999	1
2000	1
2001	0
2002	0
2003	0
2004	2
2005	1
2006	3
2007	2
2008	9
2009	11
2010	3
2011	11
2012	21
2013	15
2014	14
2015	12
2016	12
2017	9
2018	15
2019	7
2020	8
2021	9
2022	31
2023	31
2024	30
2025	22
2026	12

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