FL
François Laviolette
cs.LGstat.MLbioinformaticsq-bio.GNArtificial IntelligenceMachine learningMachine LearningSoftwareArtificial intelligencecs.CE
On Valency
published · living versionsW_26xzgw86·v1 · currentpublished
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
with Keith R. Bradnam, Joseph N. Fass, Anton Alexandrov, Paul Baranay +86
1 version
Preprints & journals
57 papers in the corpus · 2008–2022MOT: a Multi-Omics Transformer for multiclass classification tumour types predictions10.1101/2022.11.14.516459v1 · OSSENI, M. A., Tossou, P., Laviolette, F. et al.2022 · 15 citationsbioRxiv
Flexible protein database based on amino acid k-mers.35650262 · Déraspe, Maxime, Boisvert, Sébastien, Laviolette, François et al.2022 · 9 citationsScientific reports. 2022;12(1):9101
Are Machine Learning Algorithms More Accurate in Predicting Vegetable and Fruit Consumption Than Traditional Statistical Models? An Exploratory Analysis.35252288 · Côté, Mélina, Osseni, Mazid Abiodoun, Brassard, Didier et al.2022 · 13 citationsFrontiers in nutrition. 2022;9:740898
Multinational Address Parsing: A Zero-Shot Evaluation2112.04008v1 · Marouane Yassine, David Beauchemin, Francois Laviolette et al.2021 · 2 citationsarXiv
PAC-Bayesian Learning of Aggregated Binary Activated Neural Networks with Probabilities over Representations2110.15137v3 · Louis Fortier-Dubois, Gael Letarte, Benjamin Leblanc et al.2021 · 0 citationsarXiv
On the robustness of generalization of drug-drug interaction models.34607569 · Kpanou, Rogia, Osseni, Mazid Abiodoun, Tossou, Prudencio et al.2021 · 16 citationsBMC bioinformatics. 2021;22(1):477
How to Certify Machine Learning Based Safety-critical Systems? A Systematic Literature Review2107.12045v3 · Florian Tambon, Gabriel Laberge, Le An et al.2021 · 94 citationsAutom Softw Eng 29, 38 (2022)
Exploring polypharmacy with artificial intelligence: data analysis protocol.34284765 · Sirois, Caroline, Khoury, Richard, Durand, Audrey et al.2021 · 18 citationsBMC medical informatics and decision making. 2021;21(1):219
A Transferable Adaptive Domain Adversarial Neural Network for Virtual Reality Augmented EMG-Based Gesture Recognition.33591919 · Cote-Allard, Ulysse, Gagnon-Turcotte, Gabriel, Phinyomark, Angkoon et al.2021 · 68 citationsIEEE transactions on neural systems and rehabilitation engineering : a publication of the IEEE Engineering in Medicine and Biology Society. 2021;29:546-555
Out-of-distribution detection for regression tasks: parameter versus predictor entropy2010.12995v2 · Yann Pequignot, Mathieu Alain, Patrick Dallaire et al.2020 · 0 citationsarXiv
Leveraging Subword Embeddings for Multinational Address Parsing2006.16152v3 · Marouane Yassine, David Beauchemin, Francois Laviolette et al.2020 · 11 citations2020 6th IEEE Congress on Information Science and Technology (CiSt)
Machine learning analysis identifies genes differentiating triple negative breast cancers.32591639 · Kothari, Charu, Osseni, Mazid Abiodoun, Agbo, Lynda et al.2020 · 50 citationsScientific reports. 2020;10(1):10464
General Cops and Robbers Games with randomness2004.11503v1 · Fr'ed'eric Simard, Jos'ee Desharnais, Francois Laviolette2020 · 7 citationsarXiv
Fast protein database as a service with kAAmer10.1101/2020.04.01.019984v1 · Deraspe, M., Boisvert, S., Laviolette, F. et al.2020 · 2 citationsbioRxiv
Interpreting Deep Learning Features for Myoelectric Control: A Comparison With Handcrafted Features.32195238 · Côté-Allard, Ulysse, Campbell, Evan, Phinyomark, Angkoon et al.2024 · 130 citationsFrontiers in bioengineering and biotechnology. 2020;8:158
The Indian Chefs Process2001.10657v1 · Patrick Dallaire, Luca Ambrogioni, Ludovic Trottier et al.2020 · 1 citationarXiv
Unsupervised Domain Adversarial Self-Calibration for Electromyographic-based Gesture Recognition1912.11037v5 · Ulysse Cot'e-Allard, Gabriel Gagnon-Turcotte, Angkoon Phinyomark et al.2019 · 61 citationsin IEEE Access, vol. 8, pp. 177941-177955, 2020
A Low-Cost, Wireless, 3-D-Printed Custom Armband for sEMG Hand Gesture Recognition.31238529 · Côté-Allard, Ulysse, Gagnon-Turcotte, Gabriel, Laviolette, François et al.2019 · 82 citationsSensors (Basel, Switzerland). 2019;19(12)
Mass spectra alignment using virtual lock-masses.31186508 · Brochu, Francis, Plante, Pier-Luc, Drouin, Alexandre et al.2020 · 11 citationsScientific reports. 2019;9(1):8469
Adaptive Deep Kernel Learning1905.12131v2 · Prudencio Tossou, Basile Dura, Francois Laviolette et al.2019 · 17 citationsarXiv
Dichotomize and Generalize: PAC-Bayesian Binary Activated Deep Neural Networks1905.10259v5 · Gael Letarte, Pascal Germain, Benjamin Guedj et al.2019 · 12 citationsNeurIPS 2019
Canadian Association of Radiologists White Paper on Ethical and Legal Issues Related to Artificial Intelligence in Radiology.30962048 · Jaremko, Jacob L, Azar, Marleine, Bromwich, Rebecca et al.2019 · 199 citationsCanadian Association of Radiologists journal = Journal l'Association canadienne des radiologistes. 2019;70(2):107-118
Predicting Ion Mobility Collision Cross-Sections Using a Deep Neural Network: DeepCCS.30932474 · Plante, Pier-Luc, Francovic-Fontaine, Élina, May, Jody C et al.2020 · 174 citationsAnalytical chemistry. 2019;91(8):5191-5199
Interpretable genotype-to-phenotype classifiers with performance guarantees.30858411 · Drouin, Alexandre, Letarte, Gaël, Raymond, Frédéric et al.2020 · 105 citationsScientific reports. 2019;9(1):4071
Deep Learning for Electromyographic Hand Gesture Signal Classification Using Transfer Learning.30714928 · Cote-Allard, Ulysse, Fall, Cheikh Latyr, Drouin, Alexandre et al.2020 · 742 citationsIEEE transactions on neural systems and rehabilitation engineering : a publication of the IEEE Engineering in Medicine and Biology Society. 2019;27(4):760-771
Maximum Margin Interval Trees1710.04234v2 · Alexandre Drouin, Toby Dylan Hocking, Francois Laviolette2017 · 4 citationsarXiv
Phenetic Comparison of Prokaryotic Genomes Using k-mers.28957508 · Déraspe, Maxime, Raymond, Frédéric, Boisvert, Sébastien et al.2017 · 20 citationsMolecular biology and evolution. 2017;34(10):2716-2729
PAC-Bayes and Domain Adaptation1707.05712v3 · Pascal Germain (MODAL), Amaury Habrard (LHC), Francois Laviolette et al.2017 · 18 citationsarXiv
Large scale modeling of antimicrobial resistance with interpretable classifiers1612.01030v1 · Alexandre Drouin, Fr'ed'eric Raymond, Gael Letarte St-Pierre et al.2016 · 8 citationsarXiv
Predictive computational phenotyping and biomarker discovery using reference-free genome comparisons.27671088 · Drouin, Alexandre, Giguère, Sébastien, Déraspe, Maxime et al.2019 · 153 citationsBMC genomics. 2016;17(1):754
A New PAC-Bayesian Perspective on Domain Adaptation1506.04573v4 · Pascal Germain (SIERRA), Amaury Habrard (LaHC), Francois Laviolette et al.2015 · 35 citationsarXiv
Efficient Learning of Ensembles with QuadBoost1506.02535v5 · Louis Fortier-Dubois, Francois Laviolette, Mario Marchand et al.2015 · 0 citationsarXiv
Domain-Adversarial Training of Neural Networks1505.07818v4 · Yaroslav Ganin, Evgeniya Ustinova, Hana Ajakan et al.2015 · 8,436 citationsJournal of Machine Learning Research 2016, vol. 17, p. 1-35
Greedy Biomarker Discovery in the Genome with Applications to Antimicrobial Resistance1505.06249v1 · Alexandre Drouin, S'ebastien Giguere, Maxime D'eraspe et al.2015 · 0 citationsarXiv
Machine learning assisted design of highly active peptides for drug discovery.25849257 · Giguère, Sébastien, Laviolette, François, Marchand, Mario et al.2016 · 66 citationsPLoS computational biology. 2015;11(4):e1004074
Risk Bounds for the Majority Vote: From a PAC-Bayesian Analysis to a Learning Algorithm1503.08329v2 · Pascal Germain, Alexandre Lacasse, Francois Laviolette et al.2015 · 93 citationsJournal of Machine Learning Research 2015, vol. 16, p. 787-860
PAC-Bayesian Theorems for Domain Adaptation with Specialization to Linear Classifiers1503.06944v3 · Pascal Germain (SIERRA), Amaury Habrard (LHC), Francois Laviolette et al.2015 · 5 citationsarXiv
On Generalizing the C-Bound to the Multiclass and Multi-label Settings1501.03001v1 · Francois Laviolette, Emilie Morvant (LHC), Liva Ralaivola et al.2015 · 3 citationsarXiv
An Improvement to the Domain Adaptation Bound in a PAC-Bayesian context1501.03002v1 · Pascal Germain, Amaury Habrard (LHC), Francois Laviolette et al.2015 · 0 citationsarXiv
Domain-Adversarial Neural Networks1412.4446v2 · Hana Ajakan, Pascal Germain, Hugo Larochelle et al.2014 · 252 citationsarXiv
On the String Kernel Pre-Image Problem with Applications in Drug Discovery1412.1463v2 · S'ebastien Giguere, Am'elie Rolland, Francois Laviolette et al.2014 · 0 citationsarXiv
Learning interpretable models of phenotypes from whole genome sequences with the Set Covering Machine1412.1074v1 · Alexandre Drouin, S'ebastien Giguere, Vladana Sagatovich et al.2014 · 11 citationsarXiv
On the Generalization of the C-Bound to Structured Output Ensemble Methods1408.1336v2 · Francois Laviolette, Emilie Morvant (LHC), Liva Ralaivola et al.2014 · 0 citationsarXiv
Sequential Model-Based Ensemble Optimization1402.0796v1 · Alexandre Lacoste, Hugo Larochelle, Francois Laviolette et al.2014 · 23 citationsarXiv
Human Analysts at Superhuman Scales: What Has Friendly Software To Do?27447255 · Godzaridis, Élénie, Boisvert, Sébastien, Xia, Fangfang et al.2016 · 1 citationBig data. 2013;1(4):227-36
Improved design and screening of high bioactivity peptides for drug discovery1311.3573v3 · S'ebastien Giguere, Francois Laviolette, Mario Marchand et al.2013 · 0 citationsarXiv
MHC-NP: predicting peptides naturally processed by the MHC.24144535 · Giguère, Sébastien, Drouin, Alexandre, Lacoste, Alexandre et al.2014 · 49 citationsJournal of immunological methods. 2013;400-401:30-6
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species.23870653 · Bradnam, Keith R, Fass, Joseph N, Alexandrov, Anton et al.2014 · 671 citationsGigaScience. 2013;2(1):10
Learning a peptide-protein binding affinity predictor with kernel ridge regression.23497081 · Giguère, Sébastien, Marchand, Mario, Laviolette, François et al.2013 · 48 citationsBMC bioinformatics. 2013;14:82
Ray Meta: scalable de novo metagenome assembly and profiling.23259615 · Boisvert, Sébastien, Raymond, Frédéric, Godzaridis, Elénie et al.2015 · 591 citationsGenome biology. 2012;13(12):R122
Career total: 209 works. 57 are in this corpus.Showing the 50 most recent.
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