NJ
Nick D. Jones
q-bio.QMphysics.data-anphysics.soc-phModels, Biologicalcond-mat.stat-mechEndoscopymitochondriacs.SIphysics.bio-phstat.AP
On Valency
published · living versionsW_kb68qpzw·v1 · currentpublished
Report on the Third Workshop on Sustainable Software for Science: Practice and Experiences (WSSSPE3)
with Daniel S. Katz, Sou-Cheng T. Choi, Kyle E. Niemeyer, James Hetherington +16
1 version
W_fgs3n2ts·v1published
Preprints & journals
287 papers in the corpus · 1987–2026Unified framework for measuring segregation resolves how social and geographical space jointly shape connections2609.16469v1 · Johannes Happenhofer, Sahil Loomba, Till Hoffmann et al.2026 · 0 citationsarXiv
Large-scale single-cell mapping of concealed mitochondrial ageing10.64898/2026.07.14.738425v1 · Jethwani, H., Sukandar, K., Green, A. P. et al.2026 · 0 citationsbioRxiv
Interpretable model-free inference of parametric variation across time-series data through large-scale feature extraction2606.12836v1 · Ben D. Fulcher, Carl H. Lubba, Giorgio F. Gilestro et al.2026 · 0 citationsarXiv
Surgeries Performed in Professional Australian Cricketers 2015-2024.42824512 · Orchard, John W, Saw, Anna, Inge, Philippa et al.2026 · 0 citationsIndian journal of orthopaedics. 2026;60(9):2555-2560
Ubiquitin-mediated mitophagy regulates the inheritance of mitochondrial DNA mutations.41066576 · Frison, Michele, Lockey, Brandon S, Nie, Yu et al.2025 · 17 citationsScience (New York, N.Y.). 2025;390(6769):156-163
Limits of message passing for node classification: How class-bottlenecks restrict signal-to-noise ratio2508.17822v1 · Jonathan Rubin, Sahil Loomba, Nick S. Jones2025 · 0 citationsarXiv
DNA methylation patterns associated with prior tuberculosis infection in people with HIV.40830169 · Baluku, Joseph Baruch, Namiiro, Sharon, Zawedde, Daphine Kigongo et al.2025 · 2 citationsScientific reports. 2025;15(1):30349
Cryptic mitochondrial DNA mutations coincide with mid-late life and are pathophysiologically informative in single cells across tissues and species.40050638 · Green, Alistair P, Klimm, Florian, Marshall, Aidan S et al.2025 · 25 citationsNature communications. 2025;16(1):2250
Nasoseptal chondroprogenitors isolated through fibronectin-adherence confer no biological advantage for cartilage tissue engineering compared to nasoseptal chondrocytes.39391600 · Jovic, Thomas H, Thomson, Emman J, Jones, Nick et al.2024 · 1 citationFrontiers in bioengineering and biotechnology. 2024;12:1421111
Thresholds for adding degraded tropical forest to the conservation estate.39020163 · Ewers, Robert M, Orme, C David L, Pearse, William D et al.2024 · 43 citationsNature. 2024;631(8022):808-813
Cryptic mitochondrial ageing coincides with mid-late life and is pathophysiologically informative in single cells across tissues and species10.1101/2023.07.04.547509v1 · Green, A. P., Klimm, F., Marshall, A. S. et al.2023 · 1 citationbioRxiv
Lumbar Bone Stress Injuries and Nonunited Defects in Elite Australian Cricket Players.36853903 · Saw, Anna, Eales, Brent, Jones, Nick et al.2023 · 13 citationsClinical journal of sport medicine : official journal of the Canadian Academy of Sport Medicine. 2024;34(1):44-51
One-dimensional and comprehensive two-dimensional gas chromatographic approaches for the characterization of post-consumer recycled plastic materials.36820911 · Hochegger, Andrea, Pantò, Sebastiano, Jones, Nick et al.2023 · 9 citationsAnalytical and bioanalytical chemistry. 2023;415(13):2447-2457
Cell lineage-specific mitochondrial resilience during mammalian organogenesis.36827974 · Burr, Stephen P, Klimm, Florian, Glynos, Angelos et al.2023 · 36 citationsCell. 2023;186(6):1212-1229.e21
Stochastic survival of the densest and mitochondrial DNA clonal expansion in aging.36442091 · Insalata, Ferdinando, Hoitzing, Hanne, Aryaman, Juvid et al.2022 · 18 citationsProceedings of the National Academy of Sciences of the United States of America. 2022;119(49):e2122073119
Flow-modulated comprehensive two-dimensional gas chromatography combined with time-of-flight mass spectrometry: use of hydrogen as a more sustainable alternative to helium.35499702 · Galletta, Micaela, Zoccali, Mariosimone, Jones, Nick et al.2022 · 22 citationsAnalytical and bioanalytical chemistry. 2022;414(21):6371-6378
Mitochondrial DNA heteroplasmy is modulated during oocyte development propagating mutation transmission.34878831 · Zhang, Haixin, Esposito, Marco, Pezet, Mikael G et al.2025 · 41 citationsScience advances. 2021;7(50):eabi5657
Geodesic Length Distribution in Sparse Network Ensembles2111.02330v2 · Sahil Loomba, Nick S. Jones2021 · 0 citationsarXiv
Influencing dynamics on social networks without knowledge of network microstructure.34428948 · Garrod, Matthew, Jones, Nick S2021 · 7 citationsJournal of the Royal Society, Interface. 2021;18(181):20210435
Cell competition acts as a purifying selection to eliminate cells with mitochondrial defects during early mouse development.34253906 · Lima, Ana, Lubatti, Gabriele, Burgstaller, Jörg et al.2021 · 86 citationsNature metabolism. 2021;3(8):1091-1108
Discovering Cellular Mitochondrial Heteroplasmy Heterogeneity with Single Cell RNA and ATAC Sequencing.34198745 · Marshall, Aidan S, Jones, Nick S2024 · 13 citationsBiology. 2021;10(6)
Inference and influence of network structure using snapshot social behavior without network data.34088657 · Godoy-Lorite, Antonia, Jones, Nick S2022 · 14 citationsScience advances. 2021;7(23)
Bladder pressure encoding by sacral dorsal root ganglion fibres: implications for decoding.33202396 · Lubba, Carl H, Ouyang, Zhonghua, Jones, Nick S et al.2022 · 4 citationsJournal of neural engineering. 2021;18(1)
What would it take to build a thermodynamically reversible Universal Turing machine? Computational and thermodynamic constraints in a molecular design2102.03388v1 · Rory A. Brittain, Nick S. Jones, Thomas E. Ouldridge2021 · 0 citationsarXiv
Modularity maximisation for graphons2101.00503v1 · Florian Klimm, Nick S. Jones, Michael T. Schaub2021 · 1 citationarXiv
Visualizing, quantifying, and manipulating mitochondrial DNA in vivo.33454000 · Prole, David L, Chinnery, Patrick F, Jones, Nick S2021 · 42 citationsThe Journal of biological chemistry. 2020;295(51):17588-17601
Regulatory groundwater monitoring: Realistic residues of pinoxaden and metabolites at vulnerable locations.33218812 · McManus, Sarah, Payvandi, Sevil, Sweeney, Paul et al.2021 · 4 citationsThe Science of the total environment. 2021;761:143313
Soundscapes predict species occurrence in tropical forests10.1101/2020.09.24.311381v1 · Sethi, S. S., Ewers, R. M., Jones, N. S. et al.2020 · 33 citationsbioRxiv
Stochastic survival of the densest and mitochondrial DNA clonal expansion in ageing10.1101/2020.09.01.277137v2 · Insalata, F., Hoitzing, H., Aryaman, J. et al.2020 · 1 citationbioRxiv
Survival of the densest accounts for the expansion of mitochondrial mutations in ageing2009.00403v1 · Ferdinando Insalata, Hanne Hoitzing, Juvid Aryaman et al.2020 · 0 citationsarXiv
Cell identity and nucleo-mitochondrial genetic context modulate OXPHOS performance and determine somatic heteroplasmy dynamics.32832682 · Lechuga-Vieco, Ana Victoria, Latorre-Pellicer, Ana, Johnston, Iain G et al.2025 · 51 citationsScience advances. 2020;6(31):eaba5345
Characterizing soundscapes across diverse ecosystems using a universal acoustic feature set.32636258 · Sethi, Sarab S, Jones, Nick S, Fulcher, Ben D et al.2020 · 172 citationsProceedings of the National Academy of Sciences of the United States of America. 2020;117(29):17049-17055
A self-organizing, living library of time-series data.32636393 · Fulcher, Ben D, Lubba, Carl H, Sethi, Sarab S et al.2021 · 12 citationsScientific data. 2020;7(1):213
Democratizing University Research2006.16091v1 · Nick S. Jones, Oscar Ces2020 · 0 citationsarXiv
A mechanistic explanation of the transition to simple multicellularity in fungi.32444651 · Heaton, Luke L M, Jones, Nick S, Fricker, Mark D2020 · 40 citationsNature communications. 2020;11(1):2594
Inference and Influence of Large-Scale Social Networks Using Snapshot Population Behaviour without Network Data2003.07146v2 · Antonia Godoy-Lorite, Nick S. Jones2020 · 2 citationsarXiv
SAFE Acoustics: an open-source, real-time eco-acoustic monitoring network in the tropical rainforests of Borneo10.1101/2020.02.27.968867v1 · Sethi, S. S., Ewers, R. M., Jones, N. S. et al.2020 · 37 citationsbioRxiv
Combining machine learning and a universal acoustic feature-set yields efficient automated monitoring of ecosystems10.1101/865980v1 · Sethi, S. S., Jones, N. S., Fulcher, B. D. et al.2019 · 5 citationsbioRxiv
The homeostatic dynamics of feeding behaviour identify novel mechanisms of anorectic agents.31805040 · McGrath, Thomas M, Spreckley, Eleanor, Rodriguez, Aina Fernandez et al.2020 · 6 citationsPLoS biology. 2019;17(12):e3000482
Bladder pressure encoding by near-independent fibre subpopulations - implications for decoding10.1101/826297v2 · Lubba, C. H., Ouyang, Z., Jones, N. S. et al.2019 · 0 citationsbioRxiv
Regulation of Mother-to-Offspring Transmission of mtDNA Heteroplasmy.31588014 · Latorre-Pellicer, Ana, Lechuga-Vieco, Ana Victoria, Johnston, Iain G et al.2020 · 83 citationsCell metabolism. 2019;30(6):1120-1130.e5
Correction to: PyPNS: Multiscale Simulation of a Peripheral Nerve in Python.30993583 · Lubba, Carl H, Le Guen, Yann, Jarvis, Sarah et al.2020 · 1 citationNeuroinformatics. 2019;17(4):629
Precision identification of high-risk phenotypes and progression pathways in severe malaria without requiring longitudinal data.31312723 · Johnston, Iain G, Hoffmann, Till, Greenbury, Sam F et al.2025 · 19 citationsNPJ digital medicine. 2019;2:63
Mitochondrial Network State Scales mtDNA Genetic Dynamics31253641 · Aryaman, Juvid, Bowles, Charlotte, Jones, Nick S et al.2020 · 60 citationsGenetics. 2019;212(4):1429-1443
Energetic costs of cellular and therapeutic control of stochastic mitochondrial DNA populations.31242175 · Hoitzing, Hanne, Gammage, Payam A, Haute, Lindsey Van et al.2019 · 24 citationsPLoS computational biology. 2019;15(6):e1007023
CompEngine: a self-organizing, living library of time-series data1905.01042v1 · Ben D. Fulcher, Carl H. Lubba, Sarab S. Sethi et al.2019 · 4 citationsarXiv
catch22: CAnonical Time-series CHaracteristics1901.10200v2 · Carl H Lubba, Sarab S Sethi, Philip Knaute et al.2019 · 441 citationsarXiv
Mitochondrial Heterogeneity.30740126 · Aryaman, Juvid, Johnston, Iain G, Jones, Nick S2023 · 121 citationsFrontiers in genetics. 2018;9:718
PyPNS: Multiscale Simulation of a Peripheral Nerve in Python.29948844 · Lubba, Carl H, Le Guen, Yann, Jarvis, Sarah et al.2019 · 37 citationsNeuroinformatics. 2019;17(1):63-81
Efficient peripheral nerve firing characterisation through massive feature extraction10.1101/508341v1 · Lubba, C. H., Fulcher, B. D., Schultz, S. R. et al.2018 · 2 citationsbioRxiv
Career total: 417 works. 287 are in this corpus.Showing the 50 most recent.
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