MB
Mauricio Barahona
physics.soc-phcs.SIcs.LGq-bio.QMq-bio.MNstat.MLmath.OCphysics.data-ancs.IRModels, Biological
On Valency
published · living versionsW_gaqm9khp·v1 · currentpublished
Simulation-free approximate Bayesian computation for stochastic reaction networks
with Zekai Li, Philipp Thomas
1 version
Preprints & journals
201 papers in the corpus · 1988–2026Simulation-free approximate Bayesian computation for stochastic reaction networks2610.26361v1 · Zekai Li, Mauricio Barahona, Philipp Thomas2026 · 0 citationsarXivon Valency
Arousal-informed neuronal avalanches operate near criticality10.64898/2026.10.12.757995v1 · Stefens, C., Rajpal, H., Canzano, J. S. et al.2026 · 0 citationsbioRxiv
Few-shot neuromorphic vision in a nonlinear photonic network laser.42696569 · Ng, Wai Kit, Dranczewski, Jakub, Fischer, Anna et al.2026 · 2 citationsScience advances. 2026;12(36):eaec6546
Graph-theoretic design of lasing networks for physical vision2608.13097v1 · Paul Obernolte, Jakub Dranczewski, Yixiu Yin et al.2026 · 0 citationsarXiv
Label-free biochemical imaging and time point analysis of neural organoids via deep learning-enhanced Raman microspectroscopy.42585326 · Georgiev, Dimitar, Xie, Ruoxiao, Reumann, Daniel et al.2026 · 0 citationsScience advances. 2026;12(33):eaec5080
A Martingale Kernel Independence Test2605.22549v1 · Felix Laumann, Zhaolu Liu, Mauricio Barahona2026 · 0 citationsarXiv
Predicting trajectories of illness using RNA velocity of whole blood.42091589 · Dunican, Claire, Wilson, Clare, Habgood-Coote, Dominic et al.2026 · 1 citationNature communications. 2026;17(1)
Root-to-Leaf Path Random Walks, Normalized Hodge Laplacians, and Cheeger Inequalities on Simplicial Complexes2604.27241v1 · Francesco Vigano, Tolga Birdal, Michael T. Schaub et al.2026 · 0 citationsarXiv
WGS-Enabled Surveillance Improves Detection Of Transmission Events Within A Large Tertiary Care Hospital Trust In London10.64898/2026.03.24.26347804v1 · Rodgus, J., Fraser-Krauss, O., Ravindra, Y. et al.2026 · 0 citationsmedRxiv
Machine Learning Approaches for Interpretable Antibody Property Prediction Using Structural Data.42680992 · Michalewicz, Kevin, Barahona, Mauricio, Bravi, Barbara2026 · 1 citationMethods in molecular biology (Clifton, N.J.). 2026;3058:171-196
Information-theoretic signatures of causality in Bayesian networks and hypergraphs2512.20552v2 · Sung En Chiang, Zhaolu Liu, Robert L. Peach et al.2025 · 0 citationsarXiv
The exit of naive pluripotency contains a metabolism-induced checkpoint for telomere homeostasis.41385374 · de Souza, Roshni A, Barneda, David, Karimlou, Donja et al.2025 · 0 citationsCell reports. 2025;44(12):116654
Synergy mediates Long-Range Correlations in the Visual Cortex Near Criticality.41292948 · Rajpal, Hardik, Stefens, Cedric, Saeedian, Meghdad et al.2026 · 0 citationsbioRxiv : the preprint server for biology. 2025
Falling asleep follows a predictable bifurcation dynamic.41152637 · Li, Junheng, Ilina, Anastasia, Peach, Robert et al.2025 · 10 citationsNature neuroscience. 2025;28(12):2515-2525
Protein generation with embedding learning for motif diversification2510.18790v1 · Kevin Michalewicz, Chen Jin, Philip Alexander Teare et al.2025 · 0 citationsarXiv
MCbiF: Measuring Topological Autocorrelation in Multiscale Clusterings via 2-Parameter Persistent Homology2510.14710v2 · Juni Schindler, Mauricio Barahona2025 · 0 citationsarXiv
Mode Visualization and Control of Complex Lasers Using Neural Networks.41112318 · Ng, Wai Kit, Raziman, T V, Saxena, Dhruv et al.2025 · 2 citationsACS photonics. 2025;12(10):5774-5781
Digitalization of Access to Primary Care: Is There an Equity-Efficiency Trade-Off?40673900 · Rodrigues, Daniela, Kreif, Noemi, Darzi, Ara et al.2025 · 2 citationsHealth economics. 2025;34(10):1943-1962
Permutation-Free High-Order Interaction Tests2506.05963v1 · Zhaolu Liu, Robert L. Peach, Mauricio Barahona2025 · 1 citationarXiv
Rethinking health services around clusters of co-existing diseases: impact on integrated care for people with Multiple Long-Term Conditions10.1101/2025.05.06.25327045v1 · Beaney, T., Clarke, J., Downey, L. et al.2025 · 1 citationmedRxiv
Single-Mode Emission by Phase-Delayed Coupling Between Nanolasers.40416323 · Raziman, T V, Fischer, Anna, Nori, Riccardo et al.2025 · 2 citationsACS photonics. 2025;12(5):2337-2343
Moment-based parameter inference with error guarantees for stochastic reaction networks.40183299 · Li, Zekai, Barahona, Mauricio, Thomas, Philipp2025 · 1 citationThe Journal of chemical physics. 2025;162(13)
Integrating protein sequence embeddings with structure via graph-based deep learning for single-residue property prediction2502.17294v2 · Kevin Michalewicz, Mauricio Barahona, Barbara Bravi2025 · 4 citationsarXiv
MARBLE: interpretable representations of neural population dynamics using geometric deep learning.39962310 · Gosztolai, Adam, Peach, Robert L, Arnaudon, Alexis et al.2025 · 30 citationsNature methods. 2025;22(3):612-620
Transformer-based deep learning model for the diagnosis of suspected lung cancer in primary care based on electronic health record data.39536394 · Wang, Lan, Yin, Yonghua, Glampson, Ben et al.2024 · 24 citationsEBioMedicine. 2024;110:105442
Hyperspectral unmixing for Raman spectroscopy via physics-constrained autoencoders.39471214 · Georgiev, Dimitar, Fernández-Galiana, Álvaro, Vilms Pedersen, Simon et al.2024 · 50 citationsProceedings of the National Academy of Sciences of the United States of America. 2024;121(45):e2407439121
ANTIPASTI: Interpretable prediction of antibody binding affinity exploiting normal modes and deep learning.39461331 · Michalewicz, Kevin, Barahona, Mauricio, Bravi, Barbara2024 · 15 citationsStructure (London, England : 1993). 2024;32(12):2422-2434.e5
Platinum(II)-Salphen Complexes as DNA Binders and Photosensitisers.39115950 · Bartlett, Molly, Burke, Joseph, Sherin, Petr et al.2024 · 10 citationsChemistry (Weinheim an der Bergstrasse, Germany). 2024;30(62):e202402465
Information-Theoretic Measures on Lattices for High-Order Interactions2408.07533v3 · Zhaolu Liu, Mauricio Barahona, Robert L. Peach2024 · 0 citationsarXiv
Integrated Analysis of Patient Networks and Plasmid Genomes to Investigate a Regional, Multispecies Outbreak of Carbapenemase-Producing Enterobacterales Carrying Both blaIMP and mcr-9 Genes.39052705 · Wan, Yu, Myall, Ashleigh C, Boonyasiri, Adhiratha et al.2024 · 20 citationsThe Journal of infectious diseases. 2024;230(1):e159-e170
Comparing natural language processing representations of coded disease sequences for prediction in electronic health records.38719204 · Beaney, Thomas, Jha, Sneha, Alaa, Asem et al.2024 · 14 citationsJournal of the American Medical Informatics Association : JAMIA. 2024;31(7):1451-1462
Patterns of co-occurrent skills in UK job adverts2406.03139v1 · Zhaolu Liu, Jonathan M. Clarke, Bertha Rohenkohl et al.2024 · 4 citationsarXiv
Identifying multi-resolution clusters of diseases in ten million patients with multimorbidity in primary care in England.38811835 · Beaney, Thomas, Clarke, Jonathan, Salman, David et al.2025 · 20 citationsCommunications medicine. 2024;4(1):102
The neuron mixer and its impact on human brain dynamics.38796852 · Luff, Charlotte E, Peach, Robert, Mallas, Emma-Jane et al.2024 · 19 citationsCell reports. 2024;43(6):114274
RamanSPy: An Open-Source Python Package for Integrative Raman Spectroscopy Data Analysis.38747470 · Georgiev, Dimitar, Pedersen, Simon Vilms, Xie, Ruoxiao et al.2025 · 83 citationsAnalytical chemistry. 2024;96(21):8492-8500
LGDE: Local Graph-based Dictionary Expansion2405.07764v4 · Juni Schindler, Sneha Jha, Xixuan Zhang et al.2024 · 1 citationarXiv
Assigning disease clusters to people: A cohort study of the implications for understanding health outcomes in people with multiple long-term conditions.38638408 · Beaney, Thomas, Clarke, Jonathan, Salman, David et al.2024 · 5 citationsJournal of multimorbidity and comorbidity. 2024;14:26335565241247430
Effect of timeframes to define long term conditions and sociodemographic factors on prevalence of multimorbidity using disease code frequency in primary care electronic health records: retrospective study.38361663 · Beaney, Thomas, Clarke, Jonathan, Woodcock, Thomas et al.2024 · 11 citationsBMJ medicine. 2024;3(1):e000474
Automation risk and subjective wellbeing in the UK10.1101/2024.01.18.24301484v1 · Zheng, J., Rohenkohl, B., Barahona, M. et al.2024 · 4 citationsmedRxiv
Allosteric communication and signal transduction in proteins.38171189 · Wu, Nan, Barahona, Mauricio, Yaliraki, Sophia N2024 · 47 citationsCurrent opinion in structural biology. 2024;84:102737
Kernel-based joint independence tests for multivariate stationary and non-stationary time series.38034126 · Liu, Zhaolu, Peach, Robert L, Laumann, Felix et al.2024 · 5 citationsRoyal Society open science. 2023;10(11):230857
Kernel-Based Independence Tests for Causal Structure Learning on Functional Data.38136477 · Laumann, Felix, von Kügelgen, Julius, Park, Junhyung et al.2023 · 8 citationsEntropy (Basel, Switzerland). 2023;25(12)
Comparing natural language processing representations of disease sequences for prediction in the electronic healthcare record10.1101/2023.11.16.23298640v2 · Beaney, T., Jha, S., Alaa, A. et al.2023 · 1 citationmedRxiv
Multiscale mobility patterns and the restriction of human movement.37830024 · Schindler, Dominik J, Clarke, Jonathan, Barahona, Mauricio2024 · 9 citationsRoyal Society open science. 2023;10(10):230405
Identifying potential biases in code sequences in primary care electronic healthcare records: a retrospective cohort study of the determinants of code frequency.37758674 · Beaney, Thomas, Clarke, Jonathan, Salman, David et al.2023 · 16 citationsBMJ open. 2023;13(9):e072884
Long- and short-term history effects in a spiking network model of statistical learning.37558704 · Maes, Amadeus, Barahona, Mauricio, Clopath, Claudia2023 · 7 citationsScientific reports. 2023;13(1):12939
A continuous Structural Intervention Distance to compare Causal Graphs2307.16452v1 · Mihir Dhanakshirur, Felix Laumann, Junhyung Park et al.2023 · 2 citationsarXiv
Interaction Measures, Partition Lattices and Kernel Tests for High-Order Interactions2306.00904v3 · Zhaolu Liu, Robert L. Peach, Pedro A.M. Mediano et al.2023 · 2 citationsarXiv
Analysing Multiscale Clusterings with Persistent Homology2305.04281v5 · Juni Schindler, Mauricio Barahona2023 · 0 citationsarXiv
Feature Engineering Methods on Multivariate Time-Series Data for Financial Data Science Competitions2303.16117v2 · Thomas Wong, Mauricio Barahona2023 · 0 citationsarXiv
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