EJ
Erich Jarvis
GenomeGenomicsgenomicsBiological EvolutionEvolution, MolecularVocalization, AnimalneurosciencePhylogenychromosomalevolutionary biology
On Valency
published · living versionsW_26xzgw86·v1 · currentpublished
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
with Keith R. Bradnam, Joseph N. Fass, Anton Alexandrov, Paul Baranay +86
1 version
Preprints & journals
291 papers in the corpus · 1986–2026Generating eukaryotic reference genome assemblies: Earth BioGenome Project quality standards and recommendations.42859441 · Howe, Kerstin, Agius, Dolores R, Alioto, Tyler et al.2026 · 0 citationsArXiv. 2026
Convergent evolutionary loss of chemosensory and blood-feeding pathways in non-blood-feeding mosquitoes.42818026 · Houri-Zeevi, Leah, Brand, Philipp, Arnoldi, Irene et al.2026 · 3 citationsbioRxiv : the preprint server for biology. 2026
Reference genomes and fossils revise bat family phylogeny and biogeography.42778608 · Morales, Ariadna E, Liang, Yan, Thomas, William R et al.2026 · 2 citationsNature. 2026;658(8134):141-152
A chromosome-level genome of the Nicobar pigeon, Caloenas nicobarica.40371976 · Alexandre, Nicolas, Balacco, Jennifer, Tilley, Tatiana et al.2026 · 1 citationThe Journal of heredity. 2026;117(5):1144-1149
The genome sequence of Dermanura phaeotis (Chiroptera, Phyllostomidae, Stenodermatinae; Miller, 1902).42827568 · de Waal, Melissa R, Simmons, Nancy B, O'Toole, Brian P et al.2026 · 0 citationsWellcome open research. 2026;11:571
Short-term gonadal cultures are sufficient for germline transmission in a songbird.42624100 · Biegler, Matthew, Harter, Elijah, Sidhu, Asha V et al.2026 · 3 citationsStem cell reports. 2026;21(9):103052
The genome sequence of Gardnerycteris keenani (Chiroptera, Phyllostomidae, Stenodermatinae; Handley, 1960).42732146 · Simmons, Nancy B, de Waal, Melissa R, Mai, Meike et al.2026 · 0 citationsWellcome open research. 2026;11:527
HPRC2: A human pangenome reference with near-complete coverage of common genetic variation.42539208 · Lucas, Julian K, Hebbar, Prajna, Liao, Wen-Wei et al.2026 · 9 citationsbioRxiv : the preprint server for biology. 2026
New genomic resources and the historical demography of the Tourmaline Sunangel (Trochilidae, Heliangelus exortis) in the Colombian Andes.41732811 · Cadena, Carlos Daniel, Pabón, Laura, Díaz-Salazar, Andrés Felipe et al.2026 · 0 citationsThe Journal of heredity. 2026;117(4):868-876
Chromosome-level genome of the Adriatic sturgeon, Acipenser naccarii: A resource for polyploid fish genomics.41818464 · Biello, Roberto, Scapolatiello, Annalisa, Fava, Sebastiano et al.2026 · 0 citationsThe Journal of heredity. 2026;117(4):877-887
The Vertebrate Genomes Project Phase I: A global reference genome resource.42395566 · Formenti, Giulio, Absolon, Dominic E, Abueg, Linelle Ann L et al.2026 · 10 citationsbioRxiv : the preprint server for biology. 2026
Assessing Climate Adaptation Among Canada Lynx (Lynx canadensis) Populations at the Trailing Edge.42319239 · Lama, Tanya M, Bentley, Blair P, Johnson, Warren E et al.2026 · 0 citationsMolecular ecology. 2026;35(12):e70425
Fixed human pangenome sequences reveal origins of common human traits.42146399 · Goh, Chern-Sing, Davenport, Matthew H, Lee, Chul et al.2026 · 0 citationsbioRxiv : the preprint server for biology. 2026
A human specific CCG repeat in the RBFOX1 promoter is implicated in speech and autism.42079041 · Lee, Chul, Davenport, Matthew H, Jarvis, Erich D2026 · 3 citationsbioRxiv : the preprint server for biology. 2026
Reference genome assembly of the false killer whale (Pseudorca crassidens).41980082 · Hernandez, Keith M, Martien, Karen K, Baird, Robin W et al.2026 · 0 citationsThe Journal of heredity. 2026
The reference genome of the Asian Elephant (Elephas maximus): a foundation for conservation and genomic research.41975254 · De Panis, Diego, Arantes, Larissa S, Brown, Tom et al.2026 · 3 citationsBMC genomics. 2026;27(1)
Epigenomic methylome landscape of promoters in vertebrate genomes.41959318 · Lee, Young Ho, Lee, Chul, Jarvis, Erich D et al.2026 · 0 citationsbioRxiv : the preprint server for biology. 2026
The diploid reference genome of a human embryonic stem cell line.41959420 · Pačar, Ivana, Ungaro, Matteo Tommaso, Chen, Ying et al.2026 · 1 citationbioRxiv : the preprint server for biology. 2026
Genomic comparisons and the adaptive basis of brain size plasticity and chromosomal instability in the Eurasian common shrew.41517999 · Thomas, William R, Lama, Tanya M, Baldoni, Cecilia et al.2026 · 2 citationsMolecular biology and evolution. 2026;43(2)
Draft assemblies for 177 bird species enhance genus-level coverage.42104960 · Chen, Guangji, Wang, Shuang, Bilyeli Øksnebjerg, Daniel et al.2026 · 0 citationsGigaScience. 2026;15
A comprehensive reference genome assembly dataset of birds inhabiting Denmark, Greenland, and the Faroe Islands.42411836 · Øksnebjerg, Daniel Bilyeli, Nielsen, Sascha Dreyer, Chen, Guangji et al.2026 · 1 citationGigaScience. 2026;15
Insights into Convergent Evolution From Studying Amino Acid Patterns in Independent Lineages of Birds.40452433 · Lee, Chul, Cho, Seoae, Kim, Kyu-Won et al.2025 · 1 citationGenome biology and evolution. 2025;17(12)
Non-canonical DNA in bird telomere-to-telomere genomes.41279607 · Smeds, Linnéa, Secomandi, Simona, Lee, Chul et al.2025 · 1 citationbioRxiv : the preprint server for biology. 2025
The complete genome of a songbird.41480146 · Formenti, Giulio, Jain, Nivesh, Medico, Jack A et al.2026 · 9 citationsbioRxiv : the preprint server for biology. 2025
Chromosome-level genome assembly of the Brazilian merganser (Mergus octosetaceus), a rare and elusive waterfowl species10.1101/2025.09.16.676261v1 · Granger-Neto, H. P., Borges, I. R. F., Cavalcanti, D. B. et al.2025 · 1 citationbioRxiv
Quaternary Habitat Fluctuations and Demographic Dynamics in Turtles Inferred From Environmental Niche Modelling and Whole Genome Data.40905325 · Sozzoni, Marcella, Balacco, Jennifer, Bellavita, Massimo et al.2025 · 3 citationsMolecular ecology resources. 2025;25(8):e70040
Chromosome-level genome assembly of the Tyrrhenian tree frog (Hyla sarda).40897714 · Paris, Josephine R, Bisconti, Roberta, Chiocchio, Andrea et al.2025 · 1 citationScientific data. 2025;12(1):1539
Persistent Genomic Erosion in Whooping Cranes Despite Demographic Recovery.40856093 · Fontsere, Claudia, Speak, Samuel A, Caven, Andrew J et al.2025 · 18 citationsMolecular ecology. 2025;34(23):e70088
Genomic resources for comparative analyses of obligate avian brood parasitism.41030989 · Carroll, Rachel A, Ricemeyer, Edward S, Hillier, LaDeana W et al.2025 · 1 citationbioRxiv : the preprint server for biology. 2025
Mouse pups lacking a cerebral cortex develop abnormal vocal behavior10.1101/2025.07.17.665371v1 · Boyd, J. L., Vargas, C., Jarvis, E. D.2025 · 0 citationsbioRxiv
A chromosomal level genome assembly of Nguni Sheep, Ovis aries.40640211 · Nesengani, Lucky Tendani, Tshilate, Thendo, Mdyogolo, Sinebongo et al.2025 · 1 citationScientific data. 2025;12(1):1193
Sex chromosome gene expression associated with vocal learning following hormonal manipulation in female zebra finches.40586517 · Davenport, Matthew, Choe, Ha Na, Matsunami, Hiroaki et al.2025 · 1 citationeLife. 2025;12
Mountable miniature microphones to identify and assign mouse ultrasonic vocalizations.40527290 · Waidmann, Elena N, Yang, Victor H Y, Luo, Erica et al.2025 · 11 citationsCell reports methods. 2025;5(6):101081
The genome sequence of Artibeus intermedius (Chiroptera, Phyllostomidae, Stenodermatinae; J. A. Allen, 1897).41312306 · Simmons, Nancy B, Ingala, Melissa R, O'Toole, Brian P et al.2025 · 1 citationWellcome open research. 2025;10:314
A chromosome-level reference genome for the critically endangered Southern Corroboree frog ( Pseudophryne corroboree).40756765 · Kosch, Tiffany A, Berger, Lee, Crawford, Andrew J et al.2026 · 1 citationWellcome open research. 2025;10:228
Evolutionarily distinct lineages of a migratory bird of prey show divergent responses to climate change.40221430 · Ferrer Obiol, Joan, Bounas, Anastasios, Brambilla, Mattia et al.2025 · 20 citationsNature communications. 2025;16(1):3503
The genome sequence of Glossophaga mutica (Chiroptera, Phyllostomidae, Glossophaginae; Merriam, 1898).40386544 · Simmons, Nancy B, Ingala, Melissa R, O'Toole, Brian P et al.2025 · 2 citationsWellcome open research. 2025;10:174
The genome sequence of Artibeus lituratus (Chiroptera, Phyllostomidae, Stenodermatinae; Olfers, 1818).40808701 · Simmons, Nancy B, Ingala, Melissa R, O'Toole, Brian P et al.2025 · 1 citationWellcome open research. 2025;10:170
Author Correction: Pangenome graphs and their applications in biodiversity genomics.39979599 · Secomandi, Simona, Gallo, Guido Roberto, Rossi, Riccardo et al.2025 · 0 citationsNature genetics. 2025;57(3):763
Insights into the Evolution of Ancient Shark and Ray Sex Chromosomes10.1101/2025.02.26.637739v1 · Lee, S.-H., Fedrigo, O., Soler-Clavel, L. et al.2025 · 8 citationsbioRxiv
A humanized NOVA1 splicing factor alters mouse vocal communications.39966351 · Tajima, Yoko, Vargas, César D M, Ito, Keiichi et al.2025 · 19 citationsNature communications. 2025;16(1):1542
Evaluation of sequencing reads at scale using rdeval.39975369 · Formenti, Giulio, Koo, Bonhwang, Sollitto, Marco et al.2025 · 4 citationsbioRxiv : the preprint server for biology. 2025
Chromosome-level reference genome assembly of the gyrfalcon (Falco rusticolus) and population genomics offer insights into the falcon population in Mongolia.39900672 · Al-Ajli, Farooq Omar, Formenti, Giulio, Fedrigo, Olivier et al.2025 · 2 citationsScientific reports. 2025;15(1):4154
Chromosome-level echidna genome illuminates evolution of multiple sex chromosome system in monotremes.39778707 · Zhou, Yang, Jin, Jiazheng, Li, Xuemei et al.2025 · 13 citationsGigaScience. 2025;14
A Complete Assembly and Annotation of the American Shad Genome Yields Insights into the Origins of Diadromy.39786563 · Velotta, Jonathan P, Iqbal, Azwad R, Glenn, Emma S et al.2025 · 5 citationsGenome biology and evolution. 2025;17(1)
Haplotype-resolved reference genomes of the sea turtle clade unveil ultra-syntenic genomes with hotspots of divergence.40971593 · Arantes, Larissa S, Brown, Tom, De Panis, Diego et al.2025 · 9 citationsGigaScience. 2025;14
Pangenome graphs and their applications in biodiversity genomics.39779953 · Secomandi, Simona, Gallo, Guido Roberto, Rossi, Riccardo et al.2025 · 67 citationsNature genetics. 2025;57(1):13-26
Biomarkers of racism-based stress injury: A feasibility and correlation study.39911924 · Kimani, Rachel Wangari, Tobin, Jonathan N, Cole, Steven W et al.2025 · 2 citationsJournal of clinical and translational science. 2025;9(1):e23
Distinct patterns of genetic variation at low-recombining genomic regions represent haplotype structure.39208288 · Ishigohoka, Jun, Bascón-Cardozo, Karen, Bours, Andrea et al.2024 · 23 citationsEvolution; international journal of organic evolution. 2024;78(12):1916-1935
Ecological diversification of sea catfishes is accompanied by genome-wide signatures of positive selection.39567489 · Rincon-Sandoval, Melissa, De-Kayne, Rishi, Shank, Stephen D et al.2024 · 10 citationsNature communications. 2024;15(1):10040
Career total: at least 725 works. 291 are in this corpus.Showing the 50 most recent.
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