SR
Stephen Richards
Genome, InsectEvolution, MolecularGenomeGenomicsGenetic VariationChromosome Inversionevolutionary biologyGene family evolutiongenomicsTranscriptome
On Valency
published · living versionsW_26xzgw86·v1 · currentpublished
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
with Keith R. Bradnam, Joseph N. Fass, Anton Alexandrov, Paul Baranay +86
1 version
Preprints & journals
105 papers in the corpus · 1989–2026Reference genome of the Californian trapdoor spider Aptostichus stephencolberti Bond 2008 (Araneae: Mygalomorphae: Euctenizidae).42708332 · Richards, Stephen, Jochim, Emma, Newton, Lacie et al.2026 · 0 citationsThe Journal of heredity. 2026
Multiple roads to swarming: divergent molecular machineries drive the repeated evolution of locusts10.64898/2026.08.19.745877v1 · Techer, M. A., Sim, S. B., Dudchenko, O. et al.2026 · 0 citationsbioRxiv
Experiences in providing a community educational resource for the All of Us Researcher Workbench.39259934 · Ritter, Deborah I, Byun, Jinyoung, Wang, Jun et al.2024 · 2 citationsJournal of the American Medical Informatics Association : JAMIA. 2024;31(12):2952-2957
Rapid evolution of mitochondrion-related genes in haplodiploid arthropods.39390511 · Li, Yiyuan, Thomas, Gregg W C, Richards, Stephen et al.2024 · 7 citationsBMC biology. 2024;22(1):229
Genomics of natural populations: gene conversion events reveal selected genes within the inversions of Drosophila pseudoobscura.39073776 · Schaeffer, Stephen W, Richards, Stephen, Fuller, Zachary L2024 · 5 citationsG3 (Bethesda, Md.). 2024;14(10)
Improved high quality sand fly assemblies enabled by ultra low input long read sequencing.39181902 · Huang, Michelle, Kingan, Sarah, Shoue, Douglas et al.2024 · 8 citationsScientific data. 2024;11(1):918
DATA RESOURCES AND ANALYSES FAIR Header Reference genome: A TRUSTworthy standard.38076838 · Wright, Adam, Wilkinson, Mark D, Mungall, Chris et al.2025 · 2 citationsbioRxiv : the preprint server for biology. 2023
Genomic analysis of two phlebotomine sand fly vectors of Leishmania from the New and Old World.37043542 · Labbé, Frédéric, Abdeladhim, Maha, Abrudan, Jenica et al.2023 · 25 citationsPLoS neglected tropical diseases. 2023;17(4):e0010862
The Earth BioGenome Project 2020: Starting the clock.35042800 · Lewin, Harris A, Richards, Stephen, Lieberman Aiden, Erez et al.2022 · 329 citationsProceedings of the National Academy of Sciences of the United States of America. 2022;119(4)
Standards recommendations for the Earth BioGenome Project.35042802 · Lawniczak, Mara K N, Durbin, Richard, Flicek, Paul et al.2022 · 96 citationsProceedings of the National Academy of Sciences of the United States of America. 2022;119(4)
Correction to: Diversity and evolution of the transposable element repertoire in arthropods with particular reference to insects.34271865 · Petersen, Malte, Armisén, David, Gibbs, Richard A et al.2021 · 2 citationsBMC ecology and evolution. 2021;21(1):146
Correction to: Genome-enabled insights into the biology of thrips as crop pests.33198778 · Rotenberg, Dorith, Baumann, Aaron A, Ben-Mahmoud, Sulley et al.2020 · 4 citationsBMC biology. 2020;18(1):169
Genome-enabled insights into the biology of thrips as crop pests.33070780 · Rotenberg, Dorith, Baumann, Aaron A, Ben-Mahmoud, Sulley et al.2021 · 103 citationsBMC biology. 2020;18(1):142
Extensive Recombination Suppression and Epistatic Selection Causes Chromosome-Wide Differentiation of a Selfish Sex Chromosome in Drosophila pseudoobscura.32732371 · Fuller, Zachary L, Koury, Spencer A, Leonard, Christopher J et al.2021 · 30 citationsGenetics. 2020;216(1):205-226
Sawfly Genomes Reveal Evolutionary Acquisitions That Fostered the Mega-Radiation of Parasitoid and Eusocial Hymenoptera.32442304 · Oeyen, Jan Philip, Baa-Puyoulet, Patrice, Benoit, Joshua B et al.2021 · 26 citationsGenome biology and evolution. 2020;12(7):1099-1188
Loss of the Polyketide Synthase StlB Results in Stalk Cell Overproduction in Polysphondylium violaceum.32386295 · Narita, Takaaki B, Kawabe, Yoshinori, Kin, Koryu et al.2021 · 15 citationsGenome biology and evolution. 2020;12(5):674-683
Brown marmorated stink bug, Halyomorpha halys (Stål), genome: putative underpinnings of polyphagy, insecticide resistance potential and biology of a top worldwide pest.32171258 · Sparks, Michael E, Bansal, Raman, Benoit, Joshua B et al.2020 · 99 citationsBMC genomics. 2020;21(1):227
Gene content evolution in the arthropods.31969194 · Thomas, Gregg W C, Dohmen, Elias, Hughes, Daniel S T et al.2021 · 233 citationsGenome biology. 2020;21(1):15
Molecular evolutionary trends and feeding ecology diversification in the Hemiptera, anchored by the milkweed bug genome.30935422 · Panfilio, Kristen A, Vargas Jentzsch, Iris M, Benoit, Joshua B et al.2019 · 131 citationsGenome biology. 2019;20(1):64
Diversity and evolution of the transposable element repertoire in arthropods with particular reference to insects.30626321 · Petersen, Malte, Armisén, David, Gibbs, Richard A et al.2019 · 231 citationsBMC evolutionary biology. 2019;19(1):11
Arthropod Genome Sequencing and Assembly Strategies.30414106 · Richards, Stephen2019 · 12 citationsMethods in molecular biology (Clifton, N.J.). 2019;1858:1-14
Improved annotation of the insect vector of citrus greening disease: biocuration by a diverse genomics community.30820572 · Saha, Surya, Hosmani, Prashant S, Villalobos-Ayala, Krystal et al.2020 · 11 citationsDatabase : the journal of biological databases and curation. 2019;2019
Extensive recombination suppression and chromosome-wide differentiation of a segregation distorter in Drosophila10.1101/504126v1 · Fuller, Z. L., Koury, S. A., Leonard, C. J. et al.2018 · 4 citationsbioRxiv
The genome of the water strider Gerris buenoi reveals expansions of gene repertoires associated with adaptations to life on the water.30463532 · Armisén, David, Rajakumar, Rajendhran, Friedrich, Markus et al.2019 · 57 citationsBMC genomics. 2018;19(1):832
Expansions of key protein families in the German cockroach highlight the molecular basis of its remarkable success as a global indoor pest.29998472 · Harrison, Mark C, Arning, Nicolas, Kremer, Lukas P M et al.2019 · 22 citationsJournal of experimental zoology. Part B, Molecular and developmental evolution. 2018;330(5):254-264
Comparative genomics of the miniature wasp and pest control agent Trichogramma pretiosum.29776407 · Lindsey, Amelia R I, Kelkar, Yogeshwar D, Wu, Xin et al.2019 · 71 citationsBMC biology. 2018;16(1):54
The Toxicogenome of Hyalella azteca: A Model for Sediment Ecotoxicology and Evolutionary Toxicology.29634279 · Poynton, Helen C, Hasenbein, Simone, Benoit, Joshua B et al.2019 · 117 citationsEnvironmental science & technology. 2018;52(10):6009-6022
Earth BioGenome Project: Sequencing life for the future of life.29686065 · Lewin, Harris A, Robinson, Gene E, Kress, W John et al.2018 · 976 citationsProceedings of the National Academy of Sciences of the United States of America. 2018;115(17):4325-4333
Full disclosure: Genome assembly is still hard.29689052 · Richards, Stephen2019 · 17 citationsPLoS biology. 2018;16(4):e2005894
Hemimetabolous genomes reveal molecular basis of termite eusociality.29403074 · Harrison, Mark C, Jongepier, Evelien, Robertson, Hugh M et al.2019 · 295 citationsNature ecology & evolution. 2018;2(3):557-566
Genomes of Diptera.29602357 · Wiegmann, Brian M, Richards, Stephen2019 · 29 citationsCurrent opinion in insect science. 2018;25:116-124
Editorial overview: Insect genomics: Arthropod genomic resources for the 21st century: It only counts if it's in the database!29602370 · Richards, Stephen, Childers, Anna, Childers, Christopher2019 · 10 citationsCurrent opinion in insect science. 2018;25:iv-vii
A model species for agricultural pest genomics: the genome of the Colorado potato beetle, Leptinotarsa decemlineata (Coleoptera: Chrysomelidae).29386578 · Schoville, Sean D, Chen, Yolanda H, Andersson, Martin N et al.2018 · 282 citationsScientific reports. 2018;8(1):1931
Genomics of natural populations: Evolutionary forces that establish and maintain gene arrangements in Drosophila pseudoobscura.29055159 · Fuller, Zachary L, Haynes, Gwilym D, Richards, Stephen et al.2018 · 43 citationsMolecular ecology. 2017;26(23):6539-6562
Erratum to: Genomic innovations, transcriptional plasticity and gene loss underlying the evolution and divergence of two highly polyphagous and invasive Helicoverpa pest species.28810920 · Pearce, S L, Clarke, D F, East, P D et al.2019 · 26 citationsBMC biology. 2017;15(1):69
Evolutionary History of Chemosensory-Related Gene Families across the Arthropoda.28460028 · Eyun, Seong-Il, Soh, Ho Young, Posavi, Marijan et al.2018 · 206 citationsMolecular biology and evolution. 2017;34(8):1838-1862
The house spider genome reveals an ancient whole-genome duplication during arachnid evolution.28756775 · Schwager, Evelyn E, Sharma, Prashant P, Clarke, Thomas et al.2018 · 442 citationsBMC biology. 2017;15(1):62
Genomic innovations, transcriptional plasticity and gene loss underlying the evolution and divergence of two highly polyphagous and invasive Helicoverpa pest species.28756777 · Pearce, S L, Clarke, D F, East, P D et al.2018 · 359 citationsBMC biology. 2017;15(1):63
House spider genome uncovers evolutionary shifts in the diversity and expression of black widow venom proteins associated with extreme toxicity.28209133 · Gendreau, Kerry L, Haney, Robert A, Schwager, Evelyn E et al.2017 · 54 citationsBMC genomics. 2017;18(1):178
Erratum to: The whole genome sequence of the Mediterranean fruit fly, Ceratitis capitata (Wiedemann), reveals insights into the biology and adaptive evolution of a highly invasive pest species.28100280 · Papanicolaou, Alexie, Schetelig, Marc F, Arensburger, Peter et al.2019 · 1 citationGenome biology. 2017;18(1):11
The Battle Against Flystrike - Past Research and New Prospects Through Genomics.28942770 · Anstead, Clare A, Perry, Trent, Richards, Stephen et al.2017 · 10 citationsAdvances in parasitology. 2017;98:227-281
Improved annotation of the insect vector of citrus greening disease: biocuration by a diverse genomics community.29220441 · Saha, Surya, Hosmani, Prashant S, Villalobos-Ayala, Krystal et al.2018 · 69 citationsDatabase : the journal of biological databases and curation. 2017;2017
The value of new genome references.28017728 · Worley, Kim C, Richards, Stephen, Rogers, Jeffrey2017 · 36 citationsExperimental cell research. 2017;358(2):433-438
Genome of the Asian longhorned beetle (Anoplophora glabripennis), a globally significant invasive species, reveals key functional and evolutionary innovations at the beetle-plant interface.27832824 · McKenna, Duane D, Scully, Erin D, Pauchet, Yannick et al.2017 · 283 citationsGenome biology. 2016;17(1):227
The whole genome sequence of the Mediterranean fruit fly, Ceratitis capitata (Wiedemann), reveals insights into the biology and adaptive evolution of a highly invasive pest species.27659211 · Papanicolaou, Alexie, Schetelig, Marc F, Arensburger, Peter et al.2017 · 173 citationsGenome biology. 2016;17(1):192
Multifaceted biological insights from a draft genome sequence of the tobacco hornworm moth, Manduca sexta.27522922 · Kanost, Michael R, Arrese, Estela L, Cao, Xiaolong et al.2017 · 197 citationsInsect biochemistry and molecular biology. 2016;76:118-147
Genomics of Natural Populations: How Differentially Expressed Genes Shape the Evolution of Chromosomal Inversions in Drosophila pseudoobscura.27401754 · Fuller, Zachary L, Haynes, Gwilym D, Richards, Stephen et al.2017 · 62 citationsGenetics. 2016;204(1):287-301
Comparative Genomics of a Parthenogenesis-Inducing Wolbachia Symbiont.27194801 · Lindsey, Amelia R I, Werren, John H, Richards, Stephen et al.2017 · 69 citationsG3 (Bethesda, Md.). 2016;6(7):2113-23
Genome Sequencing of the Phytoseiid Predatory Mite Metaseiulus occidentalis Reveals Completely Atomized Hox Genes and Superdynamic Intron Evolution.26951779 · Hoy, Marjorie A, Waterhouse, Robert M, Wu, Ke et al.2017 · 124 citationsGenome biology and evolution. 2016;8(6):1762-75
Comparative Genomics of Two Closely Related Wolbachia with Different Reproductive Effects on Hosts.27189996 · Newton, Irene L G, Clark, Michael E, Kent, Bethany N et al.2017 · 38 citationsGenome biology and evolution. 2016;8(5):1526-42
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