BT
Bertrand Thirion
cs.LGstat.MLMagnetic Resonance Imagingq-bio.NCneuroscienceAlgorithmsBrainBrain Mappingstat.APcs.CV
On Valency
published · living versionsW_dwtmxhph·v1 · currentpublished
Scikit-learn: Machine Learning in Python
with Fabian Pedregosa, Gaël Varoquaux, Alexandre Gramfort, Vincent Michel +14
1 version
Preprints & journals
220 papers in the corpus · 2003–2026Decoding Naturalistic Speech from fMRI with Temporal Modeling and Multimodal Alignment2610.22049v1 · Corentin Caris, Louis Jalouzot, Nona Rajabi et al.2026 · 0 citationsarXiv
Cephalonauts One: A deep fMRI dataset for decoding naturalistic speech in the human brain2610.03558v1 · Antoine Collas, Louis Jalouzot, G'eraud Ilinca et al.2026 · 0 citationsarXiv
Peaks2Image: Reconstructing fMRI maps from stereotactic coordinates to enhance cognitive meta-analysis.42769493 · Meudec, Raphaël, Dockès, Jérôme, Ghayem, Fateme et al.2026 · 0 citationsImaging neuroscience (Cambridge, Mass.). 2026;4
Benchmarking External Generalization of SPD Matrix Learning for Resting-State fMRI Connectome Prediction2608.30418v1 · Ce Ju, Antoine Collas, Florent Bouchard et al.2026 · 0 citationsarXiv
Fast Whole-Brain, Geometry-Aware Functional Alignment for Cross-Subject Decoding2607.10931v1 · Pierre-Louis Barbarant, Florent Meyniel, Bertrand Thirion2026 · 0 citationsProceedings of the 9th Conference on Cognitive Computational Neuroscience, New York, NY, USA, 2026
Functional Templates in fMRI: Building Accurate and Interpretable Group-Level Decoders10.64898/2026.05.21.726781v2 · Barbarant, P.-L., Meyniel, F., Thirion, B.2026 · 0 citationsbioRxiv
Learning fMRI activations dictionaries across individual geometries via optimal transport2605.20883v1 · Sonia Mazelet, R'emi Flamary, Bertrand Thirion2026 · 0 citationsarXiv
Causal mediation analysis with one or multiple mediators: A comparative study.41955059 · Abécassis, Judith, Zenati, Houssam, Boumaïza, Sami et al.2026 · 0 citationsPsychological methods. 2026
NeuroConText: Contrastive learning for neuroscience meta-analysis with rich text representation.41852941 · Ghayem, Fateme, Meudec, Raphaël, Dockès, Jérôme et al.2026 · 1 citationImaging neuroscience (Cambridge, Mass.). 2026;4
Individual Brain Charting: fifth release of high-resolution fMRI data for cognitive mapping.41781395 · Ponce, Ana Fernanda, Aggarwal, Himanshu, Shankar, Swetha et al.2026 · 0 citationsScientific data. 2026;13(1)
SPD Learn: A Geometric Deep Learning Python Library for Neural Decoding Through Trivialization2602.22895v2 · Bruno Aristimunha, Ce Ju, Antoine Collas et al.2026 · 0 citationsarXiv
GICDM: Mitigating Hubness for Reliable Distance-Based Generative Model Evaluation2602.16449v3 · Nicolas Salvy, Hugues Talbot, Bertrand Thirion2026 · 0 citationsarXiv
Aggregate Models, Not Explanations: Improving Feature Importance Estimation2602.11760v2 · Joseph Paillard, Angel Reyero Lobo, Denis A. Engemann et al.2026 · 0 citationsarXiv
Semi-knockoffs: a model-agnostic conditional independence testing method with finite-sample guarantees2601.23124v2 · Angel Reyero-Lobo, Bertrand Thirion, Pierre Neuvial2026 · 0 citationsProceedings of the 43rd International Conference on Machine Learning (ICML 2026), 2026
An Interactive Brain Atlas of Knowledge.41473267 · Stefanovski, Leon, Bülau, Konstantin, Martin, Leon et al.2026 · 0 citationsbioRxiv : the preprint server for biology. 2026
Subject fingerprinting and task classification rely on distinct functional connectivity features.41518437 · Aggarwal, Himanshu, Ponce, Ana Fernanda, Shankar, Swetha et al.2026 · 0 citationsBrain structure & function. 2026;231(1):12
Languages of the brain: fMRI dissection of the amodal networks for language, mathematics, and social knowledge10.64898/2025.12.19.695075v1 · Moreno, A., Amalric, M., Pietrantoni, M. et al.2025 · 5 citationsbioRxiv
A non-monotonic code for event probability in the human brain.41309613 · Foucault, Cedric, Bounmy, Tiffany, Demortain, Sébastien et al.2025 · 7 citationsNature communications. 2025;16(1):10695
Cluster Size Matters: A Comparative Study of Notip and pARI for Post Hoc Inference in fMRI2511.02422v1 · Nils Peyrouset (ENSAE), Pierre Neuvial (IMT), Bertrand Thirion (PARIETAL)2025 · 0 citationsarXiv
Impact of meditation on brain age derived from multimodal neuroimaging in experts and older adults from a randomized trial.41152396 · Haudry, Sacha, Lambert, Natacha, Gaser, Christian et al.2025 · 2 citationsScientific reports. 2025;15(1):37710
Encoding of Numerosity With Robustness to Object and Scene Identity in Biologically Inspired Object Recognition Networks.40811795 · Chapalain, Thomas, Thirion, Bertrand, Eger, Evelyn2025 · 3 citationsNeural computation. 2025;37(11):1975-2010
Implantable Neural Speech Decoders: Recent Advances, Future Challenges.40960388 · Jhilal, Soufiane, Marchesotti, Silvia, Thirion, Bertrand et al.2026 · 3 citationsNeurorehabilitation and neural repair. 2026;40(2):157-172
Hierarchical Variable Importance with Statistical Control for Medical Data-Based Prediction2508.08724v1 · Joseph Paillard, Antoine Collas, Denis A. Engemann et al.2025 · 0 citationsInformation Processing in Medical Imaging. IPMI 2025. Lecture Notes in Computer Science, vol 15830. Springer, Cham
A Principled Approach for Defining and Comparing Variable Importance Measures2507.17306v3 · Angel Reyero-Lobo, Pierre Neuvial, Bertrand Thirion2025 · 0 citationsarXiv
Enhanced Generative Model Evaluation with Clipped Density and Coverage2507.01761v3 · Nicolas Salvy, Hugues Talbot, Bertrand Thirion2025 · 0 citationsThe Fourteenth International Conference on Learning Representations, 2026
Optimizing fMRI Data Acquisition for Decoding Natural Speech with Limited Participants2505.21304v1 · Louis Jalouzot, Alexis Thual, Yair Lakretz et al.2025 · 0 citationsarXiv
Unsupervised Learning for Optimal Transport plan prediction between unbalanced graphs2506.12025v3 · Sonia Mazelet, R'emi Flamary, Bertrand Thirion2025 · 0 citationsarXiv
Riemannian Flow Matching for Brain Connectivity Matrices via Pullback Geometry2505.18193v2 · Antoine Collas, Ce Ju, Nicolas Salvy et al.2025 · 1 citationarXiv
Go Figure: Transparency in neuroscience images preserves context and clarifies interpretation.40297230 · Taylor, Paul A, Aggarwal, Himanshu, Bandettini, Peter A et al.2026 · 7 citationsArXiv. 2025
Generative T2*-weighted images as a substitute for true T2*-weighted images on brain MRI in patients with acute stroke.40113490 · Pelcat, Antoine, Le Berre, Alice, Ben Hassen, Wagih et al.2025 · 7 citationsDiagnostic and interventional imaging. 2025;106(7-8):264-271
Double Debiased Machine Learning for Mediation Analysis with Continuous Treatments2503.06156v1 · Houssam Zenati, Judith Ab'ecassis, Julie Josse et al.2025 · 0 citationsarXiv
A global effort to benchmark predictive models and reveal mechanistic diversity in long-term stroke outcomes.39464108 · Matsulevits, Anna, Alvez, Pedro, Atzori, Manfredo et al.2025 · 3 citationsbioRxiv : the preprint server for biology. 2025
Conditional Feature Importance revisited: Double Robustness, Efficiency and Inference2501.17520v5 · Angel Reyero-Lobo, Pierre Neuvial, Bertrand Thirion2025 · 1 citationarXiv
Brain state identification and neuromodulation to promote recovery of consciousness.39474045 · van der Lande, Glenn J M, Casas-Torremocha, Diana, Manasanch, Arnau et al.2026 · 23 citationsBrain communications. 2024;6(5):fcae362
Beyond group classification: Probabilistic differential diagnosis of frontotemporal dementia and Alzheimer's disease with MRI and CSF biomarkers.39232438 · Pérez-Millan, Agnès, Thirion, Bertrand, Falgàs, Neus et al.2024 · 10 citationsNeurobiology of aging. 2024;144:1-11
Measuring Variable Importance in Heterogeneous Treatment Effects with Confidence2408.13002v4 · Joseph Paillard, Angel Reyero Lobo, Vitaliy Kolodyazhniy et al.2024 · 0 citationsProceedings of the 42nd International Conference on Machine Learning, PMLR 267:47456-47477, 2025
Multicenter validation of synthetic FLAIR as a substitute for FLAIR sequence in acute ischemic stroke.39096195 · Hamon, Guillaume, Legrand, Laurence, Hmeydia, Ghazi et al.2025 · 7 citationsEuropean stroke journal. 2025;10(1):161-171
When Knockoffs fail: diagnosing and fixing non-exchangeability of Knockoffs2407.06892v2 · Alexandre Blain, Angel Reyero Lobo, Julia Linhart et al.2024 · 0 citationsarXiv
Across-subject ensemble-learning alleviates the need for large samples for fMRI decoding2407.12056v1 · Himanshu Aggarwal, Liza Al-Shikhley, Bertrand Thirion2024 · 0 citationsMedical Image Computing and Computer Assisted Intervention 2024
Individual Brain Charting dataset extension, third release for movie watching and retinotopy data.38839770 · Pinho, Ana Luísa, Richard, Hugo, Ponce, Ana Fernanda et al.2024 · 9 citationsScientific data. 2024;11(1):590
Non-Cartesian 3D-SPARKLING vs Cartesian 3D-EPI encoding schemes for functional Magnetic Resonance Imaging at 7 Tesla.38739571 · Amor, Zaineb, Ciuciu, Philippe, G R, Chaithya et al.2024 · 4 citationsPloS one. 2024;19(5):e0299925
The coming decade of digital brain research: A vision for neuroscience at the intersection of technology and computing.40800542 · Amunts, Katrin, Axer, Markus, Banerjee, Swati et al.2025 · 49 citationsImaging neuroscience (Cambridge, Mass.). 2024;2
The past, present, and future of the brain imaging data structure (BIDS).39308505 · Poldrack, Russell A, Markiewicz, Christopher J, Appelhoff, Stefan et al.2026 · 60 citationsImaging neuroscience (Cambridge, Mass.). 2024;2:1-19
Verbal fluency predicts work resumption after awake surgery in low-grade glioma patients.38372820 · Barberis, Marion, Poisson, Isabelle, Prévost-Tarabon, Cécile et al.2024 · 5 citationsActa neurochirurgica. 2024;166(1):88
The Past, Present, and Future of the Brain Imaging Data Structure (BIDS).37744469 · Poldrack, Russell A, Markiewicz, Christopher J, Appelhoff, Stefan et al.2026 · 0 citationsArXiv. 2024
Impact of B 0 field imperfections correction on BOLD sensitivity in 3D-SPARKLING fMRI data.38156952 · Amor, Zaineb, Le Ster, Caroline, Gr, Chaithya et al.2024 · 5 citationsMagnetic resonance in medicine. 2024;91(4):1434-1448
Variable Importance in High-Dimensional Settings Requires Grouping2312.10858v1 · Ahmad Chamma (1, Bertrand Thirion (1, Denis A. Engemann2023 · 14 citationsarXiv
Information-Restricted Neural Language Models Reveal Different Brain Regions' Sensitivity to Semantics, Syntax, and Context.38144237 · Pasquiou, Alexandre, Lakretz, Yair, Thirion, Bertrand et al.2024 · 20 citationsNeurobiology of language (Cambridge, Mass.). 2023;4(4):611-636
Should one go for individual- or group-level brain parcellations? A deep-phenotyping benchmark.38012283 · Thirion, Bertrand, Aggarwal, Himanshu, Ponce, Ana Fernanda et al.2024 · 6 citationsBrain structure & function. 2024;229(1):161-181
Open design of a reproducible videogame controller for MRI and MEG.37910557 · Harel, Yann, Cyr, André, Boyle, Julie et al.2023 · 1 citationPloS one. 2023;18(11):e0290158
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